mRNA_P-canaliculata_contig107433.981.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107433.981.1
Unique NamemRNA_P-canaliculata_contig107433.981.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig107433.981.1 vs. uniprot
Match: A0A3N5R2G0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A3N5R2G0_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.590e-7
Identity = 37/139 (26.62%), Postives = 64/139 (46.04%), Query Frame = 1 
Query:    1 KREVSCRALGIVFDEAKRRNLKLEALTRGTGHKISHLSNIQEWIEWESYCTFMDNVARHLTDRDFVELGHRVADDKALRAIFLFARFISTPTA----LYKKIAAPGRNSSTNIFPCINPRLEEVAPDTIHLSLTIPEGF 405
            K+EVSC+AL ++F    ++ L  + L  G  + I +L N  E +EW  +C    N+  + +  +F E+G       +     L+A F+ T       LY +I   G      +F CI    + +AP+    +  + EG+
Sbjct:   12 KKEVSCKALELLFHAVNQKQLDAKILLAGIPYDIGYLKNKHERVEWFIWCRMTSNLRPYFSSIEFEEMGRSFVSRGSYWEGILWAFFLFTSNRFSRLLYNQIFKIG----AAMFACIKHNTDFLAPNKFVATAYLDEGY 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107433.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3N5R2G0_9BACT4.590e-726.62Uncharacterized protein (Fragment) n=1 Tax=Ignavib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107433contigP-canaliculata_contig107433:2..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.5543218-CDS-P-canaliculata_contig107433:1..4061622815643.5543218-CDS-P-canaliculata_contig107433:1..406Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107433 2..406 -
1693494183.1136773-CDS-P-canaliculata_contig107433:1..4061693494183.1136773-CDS-P-canaliculata_contig107433:1..406Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107433 2..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107433.981.1prot_P-canaliculata_contig107433.981.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107433 2..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107433.981.1

>prot_P-canaliculata_contig107433.981.1 ID=prot_P-canaliculata_contig107433.981.1|Name=mRNA_P-canaliculata_contig107433.981.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=135bp
KREVSCRALGIVFDEAKRRNLKLEALTRGTGHKISHLSNIQEWIEWESYC
TFMDNVARHLTDRDFVELGHRVADDKALRAIFLFARFISTPTALYKKIAA
PGRNSSTNIFPCINPRLEEVAPDTIHLSLTIPEGF
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mRNA from alignment at P-canaliculata_contig107433:2..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107433.981.1 ID=mRNA_P-canaliculata_contig107433.981.1|Name=mRNA_P-canaliculata_contig107433.981.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at P-canaliculata_contig107433:2..406- (Pelvetia canaliculata dioecious)
AAACGCGAAGTCTCGTGCCGTGCGCTAGGCATTGTGTTCGATGAGGCAAA
GCGAAGAAATTTAAAACTCGAGGCGCTTACTCGCGGCACCGGCCATAAAA
TTAGCCATCTTTCCAACATTCAAGAATGGATAGAGTGGGAGTCCTATTGC
ACTTTCATGGACAATGTGGCCAGACACCTTACGGACCGCGACTTCGTCGA
GCTGGGACATCGCGTGGCAGACGACAAGGCCCTACGAGCAATATTCCTCT
TCGCGAGATTCATCTCCACCCCAACCGCCCTTTACAAGAAGATAGCCGCA
CCCGGACGCAATTCCAGCACCAACATCTTTCCGTGCATTAACCCTCGTTT
AGAGGAAGTCGCTCCTGACACGATCCATCTATCGCTTACAATACCGGAAG
GGTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig107433:2..406-

>mRNA_P-canaliculata_contig107433.981.1 ID=mRNA_P-canaliculata_contig107433.981.1|Name=mRNA_P-canaliculata_contig107433.981.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at P-canaliculata_contig107433:2..406- (Pelvetia canaliculata dioecious)
AAACGCGAAGTCTCGTGCCGTGCGCTAGGCATTGTGTTCGATGAGGCAAA
GCGAAGAAATTTAAAACTCGAGGCGCTTACTCGCGGCACCGGCCATAAAA
TTAGCCATCTTTCCAACATTCAAGAATGGATAGAGTGGGAGTCCTATTGC
ACTTTCATGGACAATGTGGCCAGACACCTTACGGACCGCGACTTCGTCGA
GCTGGGACATCGCGTGGCAGACGACAAGGCCCTACGAGCAATATTCCTCT
TCGCGAGATTCATCTCCACCCCAACCGCCCTTTACAAGAAGATAGCCGCA
CCCGGACGCAATTCCAGCACCAACATCTTTCCGTGCATTAACCCTCGTTT
AGAGGAAGTCGCTCCTGACACGATCCATCTATCGCTTACAATACCGGAAG
GGTTCAAACGCGAAGTCTCGTGCCGTGCGCTAGGCATTGTGTTCGATGAG
GCAAAGCGAAGAAATTTAAAACTCGAGGCGCTTACTCGCGGCACCGGCCA
TAAAATTAGCCATCTTTCCAACATTCAAGAATGGATAGAGTGGGAGTCCT
ATTGCACTTTCATGGACAATGTGGCCAGACACCTTACGGACCGCGACTTC
GTCGAGCTGGGACATCGCGTGGCAGACGACAAGGCCCTACGAGCAATATT
CCTCTTCGCGAGATTCATCTCCACCCCAACCGCCCTTTACAAGAAGATAG
CCGCACCCGGACGCAATTCCAGCACCAACATCTTTCCGTGCATTAACCCT
CGTTTAGAGGAAGTCGCTCCTGACACGATCCATCTATCGCTTACAATACC
GGAAGGGTTC
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