mRNA_P-canaliculata_contig10743.980.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10743.980.1
Unique NamemRNA_P-canaliculata_contig10743.980.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-22
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 KQVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQKKKILWMLG 177
            K VSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct:   32 KTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
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BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.370e-22
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 QVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQKKKILWMLG 177
            +VSSVKKRVR+TGSGNLKRGQ+G RH TGPKPRSR+R L QT+LI G QKKK+LWMLG
Sbjct:   16 EVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLG 73
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BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Match: A0A4V1QUL6_9FIRM (50S ribosomal protein L35 n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4V1QUL6_9FIRM)

HSP 1 Score: 47.4 bits (111), Expect = 1.280e-5
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   10 SSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQKKKI 162
            S  KKR  +TGSG +KR Q+G+ H TG KPR R R L QT  +  T +  +
Sbjct:    8 SGSKKRFDVTGSGKVKRAQSGKNHKTGDKPRKRKRNLRQTAFVNETMESNV 58
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BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Match: A0A367XXF2_9MICO (50S ribosomal protein L35 n=2 Tax=Microbacterium TaxID=33882 RepID=A0A367XXF2_9MICO)

HSP 1 Score: 46.6 bits (109), Expect = 2.470e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   10 SSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQKKKILWMLG 177
            S  KKR ++TGSG +K+ Q+G RHN   K   R RRL Q +L+ G   K +  +LG
Sbjct:    8 SGAKKRFKITGSGKIKKQQSGMRHNLEVKSSRRTRRLNQDQLVSGNDMKTVKKLLG 63
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BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Match: E2S9J1_9ACTN (50S ribosomal protein L35 n=3 Tax=Actinomycetia TaxID=1760 RepID=E2S9J1_9ACTN)

HSP 1 Score: 45.4 bits (106), Expect = 7.050e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   10 SSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQKKKILWMLG 177
            S +KKRV+LTGSG L+R QT RRH    K  SR RRL  T  +     KK+  +LG
Sbjct:    8 SGMKKRVKLTGSGKLRREQTNRRHLLEHKSSSRTRRLEGTTDVSKADTKKVKKLLG 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10743.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JU63_9PHAE1.080e-2279.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQT0_ECTSI1.370e-2279.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4V1QUL6_9FIRM1.280e-547.0650S ribosomal protein L35 n=2 Tax=Firmicutes TaxID... [more]
A0A367XXF2_9MICO2.470e-544.6450S ribosomal protein L35 n=2 Tax=Microbacterium T... [more]
E2S9J1_9ACTN7.050e-550.0050S ribosomal protein L35 n=3 Tax=Actinomycetia Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10743contigP-canaliculata_contig10743:344..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.5156379-CDS-P-canaliculata_contig10743:343..5291622815643.5156379-CDS-P-canaliculata_contig10743:343..529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10743 344..529 +
1693494183.1032164-CDS-P-canaliculata_contig10743:343..5291693494183.1032164-CDS-P-canaliculata_contig10743:343..529Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10743 344..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10743.980.1prot_P-canaliculata_contig10743.980.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10743 344..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10743.980.1

>prot_P-canaliculata_contig10743.980.1 ID=prot_P-canaliculata_contig10743.980.1|Name=mRNA_P-canaliculata_contig10743.980.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=62bp
KQVSSVKKRVRLTGSGNLKRGQTGRRHNTGPKPRSRMRRLMQTRLIEGTQ
KKKILWMLGCG*
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mRNA from alignment at P-canaliculata_contig10743:344..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10743.980.1 ID=mRNA_P-canaliculata_contig10743.980.1|Name=mRNA_P-canaliculata_contig10743.980.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at P-canaliculata_contig10743:344..529+ (Pelvetia canaliculata dioecious)
AAACAGGTCTCATCTGTGAAGAAGCGCGTGAGATTGACCGGCTCTGGGAA
CCTCAAACGAGGGCAGACGGGGAGGAGACACAACACGGGCCCGAAACCTC
GTTCCCGGATGCGACGGTTGATGCAAACGCGTCTCATTGAAGGAACGCAG
AAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10743:344..529+

>mRNA_P-canaliculata_contig10743.980.1 ID=mRNA_P-canaliculata_contig10743.980.1|Name=mRNA_P-canaliculata_contig10743.980.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at P-canaliculata_contig10743:344..529+ (Pelvetia canaliculata dioecious)
AAACAGGTCTCATCTGTGAAGAAGCGCGTGAGATTGACCGGCTCTGGGAA
CCTCAAACGAGGGCAGACGGGGAGGAGACACAACACGGGCCCGAAACCTC
GTTCCCGGATGCGACGGTTGATGCAAACGCGTCTCATTGAAGGAACGCAG
AAGAAAAAGATTCTTTGGATGCTTGGGTGCGGTTGAAAACAGGTCTCATC
TGTGAAGAAGCGCGTGAGATTGACCGGCTCTGGGAACCTCAAACGAGGGC
AGACGGGGAGGAGACACAACACGGGCCCGAAACCTCGTTCCCGGATGCGA
CGGTTGATGCAAACGCGTCTCATTGAAGGAACGCAGAAGAAAAAGATTCT
TTGGATGCTTGGGTGCGGTTGA
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