mRNA_P-canaliculata_contig10741.978.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10741.978.1
Unique NamemRNA_P-canaliculata_contig10741.978.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10741.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10741contigP-canaliculata_contig10741:1384..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10741.978.1prot_P-canaliculata_contig10741.978.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10741 1394..1735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.305487-UTR-P-canaliculata_contig10741:1383..13931622815643.305487-UTR-P-canaliculata_contig10741:1383..1393Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10741 1384..1393 +
1693494183.0027657-UTR-P-canaliculata_contig10741:1383..13931693494183.0027657-UTR-P-canaliculata_contig10741:1383..1393Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10741 1384..1393 +
1622815643.3334265-UTR-P-canaliculata_contig10741:1735..20191622815643.3334265-UTR-P-canaliculata_contig10741:1735..2019Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10741 1736..2019 +
1693494183.0203707-UTR-P-canaliculata_contig10741:1735..20191693494183.0203707-UTR-P-canaliculata_contig10741:1735..2019Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10741 1736..2019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.3167753-CDS-P-canaliculata_contig10741:1393..17351622815643.3167753-CDS-P-canaliculata_contig10741:1393..1735Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10741 1394..1735 +
1693494183.0112581-CDS-P-canaliculata_contig10741:1393..17351693494183.0112581-CDS-P-canaliculata_contig10741:1393..1735Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10741 1394..1735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10741.978.1

>prot_P-canaliculata_contig10741.978.1 ID=prot_P-canaliculata_contig10741.978.1|Name=mRNA_P-canaliculata_contig10741.978.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp
MVHLYSRKCIIDGCSKWPIYGEGRKGTMRYCAQHAPDGMVDVGKRRRKSK
GCGKQPSYGMAGTRVAEYCAPHAPGGMVDVVSRKCRNEGCSKQPSFGVAG
TRVMEYCAPHARP*
back to top

mRNA from alignment at P-canaliculata_contig10741:1384..2019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10741.978.1 ID=mRNA_P-canaliculata_contig10741.978.1|Name=mRNA_P-canaliculata_contig10741.978.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at P-canaliculata_contig10741:1384..2019+ (Pelvetia canaliculata dioecious)
CCCGGACGGAATGGTCCACCTTTATAGCAGAAAGTGCATAATCGATGGCT
GCAGCAAATGGCCTATATACGGAGAAGGCCGTAAAGGAACGATGAGGTAC
TGCGCACAGCATGCCCCGGATGGGATGGTCGACGTTGGGAAAAGAAGGCG
CAAAAGTAAAGGCTGCGGCAAGCAACCATCGTATGGAATGGCCGGCACAA
GAGTGGCGGAGTACTGCGCACCGCACGCCCCGGGAGGGATGGTTGACGTC
GTGAGTAGAAAGTGCAGAAACGAGGGTTGCAGCAAGCAGCCGTCGTTTGG
AGTGGCCGGTACAAGAGTGATGGAGTACTGCGCACCACATGCCCGCCCGT
GACGGAATGGTGGATGTCAAGAACAGAAAGTGTAGAGCCAAGGGCTGCCG
CAAGTATCAGTCGTATGGGCTGCCTGGTACAAAAACGCCGGAGTAATGCG
CACAACACGCCAAGAACGGGATGGTCAATGTCGGGGACCGAAAGTGCAAA
ACCGAAGGCTGCCTCAAGCGCCCATCGTATGGAATGGCTGGTACGAGAAG
AATGGAGTACTGCAAACAACACGCCAACAACGGGATGGTGAATGTCCGCG
GCGACAGTAAATTAACCGGAAGAGGTTACCCCAGGC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10741:1384..2019+

>mRNA_P-canaliculata_contig10741.978.1 ID=mRNA_P-canaliculata_contig10741.978.1|Name=mRNA_P-canaliculata_contig10741.978.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig10741:1384..2019+ (Pelvetia canaliculata dioecious)
ATGGTCCACCTTTATAGCAGAAAGTGCATAATCGATGGCTGCAGCAAATG
GCCTATATACGGAGAAGGCCGTAAAGGAACGATGAGGTACTGCGCACAGC
ATGCCCCGGATGGGATGGTCGACGTTGGGAAAAGAAGGCGCAAAAGTAAA
GGCTGCGGCAAGCAACCATCGTATGGAATGGCCGGCACAAGAGTGGCGGA
GTACTGCGCACCGCACGCCCCGGGAGGGATGGTTGACGTCGTGAGTAGAA
AGTGCAGAAACGAGGGTTGCAGCAAGCAGCCGTCGTTTGGAGTGGCCGGT
ACAAGAGTGATGGAGTACTGCGCACCACATGCCCGCCCGTGAATGGTCCA
CCTTTATAGCAGAAAGTGCATAATCGATGGCTGCAGCAAATGGCCTATAT
ACGGAGAAGGCCGTAAAGGAACGATGAGGTACTGCGCACAGCATGCCCCG
GATGGGATGGTCGACGTTGGGAAAAGAAGGCGCAAAAGTAAAGGCTGCGG
CAAGCAACCATCGTATGGAATGGCCGGCACAAGAGTGGCGGAGTACTGCG
CACCGCACGCCCCGGGAGGGATGGTTGACGTCGTGAGTAGAAAGTGCAGA
AACGAGGGTTGCAGCAAGCAGCCGTCGTTTGGAGTGGCCGGTACAAGAGT
GATGGAGTACTGCGCACCACATGCCCGCCCGTGA
back to top