mRNA_P-canaliculata_contig107289.962.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107289.962.1
Unique NamemRNA_P-canaliculata_contig107289.962.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig107289.962.1 vs. uniprot
Match: A0A3C0EJG9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0EJG9_9BACT)

HSP 1 Score: 137 bits (346), Expect = 3.950e-33
Identity = 96/278 (34.53%), Postives = 146/278 (52.52%), Query Frame = 1 
Query:    1 ELERGRGLDPDNGIYDLLHAAVLMRRAGDMERNDRPDDEEGESIPAVRMN-----DAPPH---WSQPPDQKRVERALEFYRQAAAKPHIAMHQLDFQRLRMAQLPPPQSMMAYLGRAGDGMVLSLPQLGLDRFLTRAVVAHAVELAATNRGAEAVAWLDVADEANRKVAASRELLNGVLVSVGDLETLKRARAWVARRRGDDAGAERAI-AVADAFRKRSASFWATATDDAYDDRRARAGLMVGALIPAVPGYTVNAAPFRLGEYLLVDRFGLTGLLV 807
            EL+RGR LDPDNG+YDL+ A++L+R    +E     D ++    PA+R       + P H   +  P     +++A+    +A   P+I +H +D QRLRMAQLP  +SM  Y  R      + LP L   R L R + A A++ A    G  A+ WL+++D   RK+AA  + +  ++V    L      RA+V    GD   A +A+ A ADA ++           D   ++R  +G M+G L+  +P Y ++  PFRLGEY ++DR  LT LL+
Sbjct:  205 ELQRGRKLDPDNGVYDLIEASLLIRDVKFVE-----DAKQSLVFPALRNKPTSDPNEPHHPYCFESPQSLDEMQQAISLLERAVYHPYITLHMMDMQRLRMAQLPAARSMQEYFIRVTRVQGVYLPPLANSRRLARYIGAAALQQAYKGDGKSAIQWLELSDHWQRKMAADSDTVIKLMVVRSILSLNLYYRAFVYDALGDAQAATKAMQAYADAAKEYDQVMNRFRMTDEMKEKRKHSGAMLGMLLEVIPSYKIDPTPFRLGEYAVMDRALLTTLLL 477
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107289.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C0EJG9_9BACT3.950e-3334.53Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107289contigP-canaliculata_contig107289:77..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.468314-CDS-P-canaliculata_contig107289:76..1981622815642.468314-CDS-P-canaliculata_contig107289:76..198Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107289 77..198 +
1693494182.6219242-CDS-P-canaliculata_contig107289:76..1981693494182.6219242-CDS-P-canaliculata_contig107289:76..198Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107289 77..198 +
1622815642.480751-CDS-P-canaliculata_contig107289:234..9191622815642.480751-CDS-P-canaliculata_contig107289:234..919Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107289 235..919 +
1693494182.629586-CDS-P-canaliculata_contig107289:234..9191693494182.629586-CDS-P-canaliculata_contig107289:234..919Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107289 235..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107289.962.1prot_P-canaliculata_contig107289.962.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107289 77..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107289.962.1

>prot_P-canaliculata_contig107289.962.1 ID=prot_P-canaliculata_contig107289.962.1|Name=mRNA_P-canaliculata_contig107289.962.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=269bp
ELERGRGLDPDNGIYDLLHAAVLMRRAGDMERNDRPDDEEGESIPAVRMN
DAPPHWSQPPDQKRVERALEFYRQAAAKPHIAMHQLDFQRLRMAQLPPPQ
SMMAYLGRAGDGMVLSLPQLGLDRFLTRAVVAHAVELAATNRGAEAVAWL
DVADEANRKVAASRELLNGVLVSVGDLETLKRARAWVARRRGDDAGAERA
IAVADAFRKRSASFWATATDDAYDDRRARAGLMVGALIPAVPGYTVNAAP
FRLGEYLLVDRFGLTGLLV
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mRNA from alignment at P-canaliculata_contig107289:77..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107289.962.1 ID=mRNA_P-canaliculata_contig107289.962.1|Name=mRNA_P-canaliculata_contig107289.962.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at P-canaliculata_contig107289:77..919+ (Pelvetia canaliculata dioecious)
GAACTTGAACGCGGCCGCGGGCTGGACCCCGACAATGGGATCTATGACCT
GCTGCACGCGGCGGTGTTGATGCGGCGTGCGGGGGATATGGAACGAAACG
ATCGACCGGATGATGAGGAAGGGTCAGAGTCGTTTCTTGCGAGCCCCGGC
TCGGCAAGTGAATCGATTCCGGCGGTACGGATGAATGACGCGCCACCGCA
CTGGTCGCAGCCGCCGGATCAGAAGCGGGTCGAGCGGGCGCTGGAGTTCT
ACCGCCAGGCCGCCGCGAAACCGCATATCGCGATGCATCAACTTGATTTT
CAGAGGCTGCGGATGGCGCAACTCCCGCCGCCGCAGTCGATGATGGCTTA
CTTGGGGCGTGCCGGCGACGGAATGGTTCTATCGCTGCCGCAGCTGGGTC
TGGACCGATTTCTGACCCGGGCGGTGGTGGCGCACGCCGTGGAACTTGCC
GCCACCAACCGGGGTGCGGAAGCGGTCGCATGGTTGGACGTGGCGGACGA
AGCAAATCGCAAGGTGGCGGCTTCGCGTGAGTTGCTGAACGGGGTGTTGG
TGTCGGTGGGCGATCTTGAGACGCTGAAAAGGGCACGGGCGTGGGTAGCG
CGGCGCCGCGGCGATGATGCGGGTGCGGAGCGGGCGATTGCCGTTGCCGA
CGCGTTTCGTAAACGGTCCGCAAGTTTCTGGGCCACGGCAACGGACGACG
CCTACGACGATCGGCGGGCGCGGGCGGGGTTGATGGTGGGGGCCCTGATT
CCGGCGGTTCCGGGCTACACGGTAAACGCAGCTCCGTTTCGCCTGGGTGA
ATACCTGCTGGTGGACCGTTTTGGACTCACGGGATTGCTGGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig107289:77..919+

>mRNA_P-canaliculata_contig107289.962.1 ID=mRNA_P-canaliculata_contig107289.962.1|Name=mRNA_P-canaliculata_contig107289.962.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at P-canaliculata_contig107289:77..919+ (Pelvetia canaliculata dioecious)
GAACTTGAACGCGGCCGCGGGCTGGACCCCGACAATGGGATCTATGACCT
GCTGCACGCGGCGGTGTTGATGCGGCGTGCGGGGGATATGGAACGAAACG
ATCGACCGGATGATGAGGAAGGGAACTTGAACGCGGCCGCGGGCTGGACC
CCGACAATGGGATCTATGACCTGCTGCACGCGGCGGTGTTGATGCGGCGT
GCGGGGGATATGGAACGAAACGATCGACCGGATGATGAGGAAGGTGAATC
GATTCCGGCGGTACGGATGAATGACGCGCCACCGCACTGGTCGCAGCCGC
CGGATCAGAAGCGGGTCGAGCGGGCGCTGGAGTTCTACCGCCAGGCCGCC
GCGAAACCGCATATCGCGATGCATCAACTTGATTTTCAGAGGCTGCGGAT
GGCGCAACTCCCGCCGCCGCAGTCGATGATGGCTTACTTGGGGCGTGCCG
GCGACGGAATGGTTCTATCGCTGCCGCAGCTGGGTCTGGACCGATTTCTG
ACCCGGGCGGTGGTGGCGCACGCCGTGGAACTTGCCGCCACCAACCGGGG
TGCGGAAGCGGTCGCATGGTTGGACGTGGCGGACGAAGCAAATCGCAAGG
TGGCGGCTTCGCGTGAGTTGCTGAACGGGGTGTTGGTGTCGGTGGGCGAT
CTTGAGACGCTGAAAAGGGCACGGGCGTGGGTAGCGCGGCGCCGCGGCGA
TGATGCGGGTGCGGAGCGGGCGATTGCCGTTGCCGACGCGTTTCGTAAAC
GGTCCGCAAGTTTCTGGGCCACGGCAACGGACGACGCCTACGACGATCGG
CGGGCGCGGGCGGGGTTGATGGTGGGGGCCCTGATTCCGGCGGTTCCGGG
CTACACGGTAAACGCAGCTCCGTTTCGCCTGGGTGAATACCTGCTGGTGG
ACCGTTTTGGACTCACGGGATTGCTGGTGTGAATCGATTCCGGCGGTACG
GATGAATGACGCGCCACCGCACTGGTCGCAGCCGCCGGATCAGAAGCGGG
TCGAGCGGGCGCTGGAGTTCTACCGCCAGGCCGCCGCGAAACCGCATATC
GCGATGCATCAACTTGATTTTCAGAGGCTGCGGATGGCGCAACTCCCGCC
GCCGCAGTCGATGATGGCTTACTTGGGGCGTGCCGGCGACGGAATGGTTC
TATCGCTGCCGCAGCTGGGTCTGGACCGATTTCTGACCCGGGCGGTGGTG
GCGCACGCCGTGGAACTTGCCGCCACCAACCGGGGTGCGGAAGCGGTCGC
ATGGTTGGACGTGGCGGACGAAGCAAATCGCAAGGTGGCGGCTTCGCGTG
AGTTGCTGAACGGGGTGTTGGTGTCGGTGGGCGATCTTGAGACGCTGAAA
AGGGCACGGGCGTGGGTAGCGCGGCGCCGCGGCGATGATGCGGGTGCGGA
GCGGGCGATTGCCGTTGCCGACGCGTTTCGTAAACGGTCCGCAAGTTTCT
GGGCCACGGCAACGGACGACGCCTACGACGATCGGCGGGCGCGGGCGGGG
TTGATGGTGGGGGCCCTGATTCCGGCGGTTCCGGGCTACACGGTAAACGC
AGCTCCGTTTCGCCTGGGTGAATACCTGCTGGTGGACCGTTTTGGACTCA
CGGGATTGCTGGTG
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