mRNA_P-canaliculata_contig107230.955.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107230.955.1
Unique NamemRNA_P-canaliculata_contig107230.955.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Match: A0A4P6P8B0_9GAMM (DUF2799 domain-containing protein n=1 Tax=Litorilituus sediminis TaxID=718192 RepID=A0A4P6P8B0_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 1.320e-9
Identity = 26/87 (29.89%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   85 KCNNKDWAEIGVEDGRAGKIAEYEFAEYDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGLFEDDLCVENFDGRYDEGF 345
            +C++ +W  +G +   AGK     F +   SC  A  P  ++ YLA YQ+G++++CS+E G QQ  +G  +  +C +     ++ G+
Sbjct:   30 QCDDSNWQNVGYKVAMAGKSVRT-FNQLKESCKDAIVPEARSTYLAGYQQGIKEFCSFENGLQQGKEGKLDATVCPKELRAEFERGY 115
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BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Match: UPI0019697E56 (DUF2799 domain-containing protein n=1 Tax=Comamonas sp. lk TaxID=2201272 RepID=UPI0019697E56)

HSP 1 Score: 55.8 bits (133), Expect = 2.370e-6
Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:   55 LSACQTITRYKCNNKDWAEIGVEDGRAGKIAEYEFAE-YDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGL-FEDDLCVENFDGRYDEGFA 348
            L  C T+   +C + DWA +G  D   GK      A+ + R+C   G  +D   Y   + RGL D+C+ ++G+  A  GL F+   C    +  + +G++
Sbjct:   27 LWGCSTMDAQECRDTDWAYLGQLDAMEGKQDLKTRAQRHFRTCKDQGVQMDARAYQQGWMRGLRDFCTPQSGKAYAEQGLRFQPGYCPAQLEAAFLDGYS 126
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BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Match: A0A2E3WT81_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2E3WT81_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-5
Identity = 42/180 (23.33%), Postives = 73/180 (40.56%), Query Frame = 1 
Query:   10 KQVCVVLTLCFLTNWLSACQTITRYKCNNKDWAEIGVEDGRAGKIAEYEFAEYDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGLFEDDLCVENFDGRYDEGFAYGLLQLCTTYGGNRLGSLGLSYQETCRDRKEEDFLIAYLGGLDNYIPDAEIRLSSLRGQLVFLESSM 549
            KQ  + L    L    SAC +  +  C+ +DW E+G +DG  G    +   E   +C Q+    D   Y + +  GL  +C+   G +    G    D+C +    R+ + F  G      +    +L S  LS ++    R ++  + A    L   + + +   SS   Q+  L  S+
Sbjct:    3 KQFSMYLGFLILLMVFSACTSEQKIVCDQRDWYELGRQDGLLGHRDNFSGVERRPACEQSEVISDVNRYNSGHAAGLIAFCTSSNGFELGFSGEPFTDICPQGLADRFQQAFRLGERARELSNDSRQLESQILSTEQEILQRTQQQEIAA----LQRRLEELQTLRSSKLEQITRLRKSL 178
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BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Match: K4KP76_SIMAS (Uncharacterized protein n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) TaxID=1117647 RepID=K4KP76_SIMAS)

HSP 1 Score: 54.3 bits (129), Expect = 1.440e-5
Identity = 28/92 (30.43%), Postives = 44/92 (47.83%), Query Frame = 1 
Query:   64 CQTITRYKCNNKDWAEIGVEDGRAGKIAEYEFAEYDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGLFEDDLCVENFDGRYDE 339
            C T+ + +C   DW  IG + G  G+    ++ EY   C+      D   +   ++ GL++YCSY+TGR    +G   +  C     GRY E
Sbjct:   19 CATMNKQECEVADWYAIGYQHGVHGQ-GTGKYKEYASDCADHNIKADFTAFKRGHRAGLDEYCSYDTGRNLGQNGSSYNTQCES---GRYPE 106
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BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Match: A0A0L7MFK1_COMTE (Uncharacterized protein n=35 Tax=Comamonadaceae TaxID=80864 RepID=A0A0L7MFK1_COMTE)

HSP 1 Score: 52.0 bits (123), Expect = 5.880e-5
Identity = 30/110 (27.27%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   28 LTLCFLTN-WLSACQTITRYKCNNKDWAEIGVEDGRAGKI-AEYEFAEYDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGL-FEDDLCVENFDGRYDEGFA 348
            LTLC      L  C  +   +C + DWA +G  D   G++        + ++C   G  +D   Y   + RGL+D+C+ E+G+  A  G  F+   C    +  + +G+A
Sbjct:   17 LTLCLAAAALLGGCAGMDAQECRDTDWAYLGQLDAMDGRLDLSTRARRHFKACKDQGVQMDARAYQQGWLRGLQDFCTPESGKAYAEAGRKFQPGYCPAPLEAAFLQGYA 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107230.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4P6P8B0_9GAMM1.320e-929.89DUF2799 domain-containing protein n=1 Tax=Litorili... [more]
UPI0019697E562.370e-629.00DUF2799 domain-containing protein n=1 Tax=Comamona... [more]
A0A2E3WT81_9PROT1.040e-523.33Uncharacterized protein n=1 Tax=Bdellovibrionaceae... [more]
K4KP76_SIMAS1.440e-530.43Uncharacterized protein n=1 Tax=Simiduia agarivora... [more]
A0A0L7MFK1_COMTE5.880e-527.27Uncharacterized protein n=35 Tax=Comamonadaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107230contigP-canaliculata_contig107230:338..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue6.6e-11
Seed eggNOG ortholog1547437.LL06_08485
EggNOG free text desc.Protein of unknown function (DUF2799)
EggNOG OGs1N75A@1224,2E3UE@1,2UCUH@28211,32YRS@2,43Q27@69277
COG Functional cat.S
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size561
Cds size561
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.0297422-CDS-P-canaliculata_contig107230:337..8981622815642.0297422-CDS-P-canaliculata_contig107230:337..898Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107230 338..898 +
1693494182.383015-CDS-P-canaliculata_contig107230:337..8981693494182.383015-CDS-P-canaliculata_contig107230:337..898Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107230 338..898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107230.955.1prot_P-canaliculata_contig107230.955.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107230 338..898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107230.955.1

>prot_P-canaliculata_contig107230.955.1 ID=prot_P-canaliculata_contig107230.955.1|Name=mRNA_P-canaliculata_contig107230.955.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp
MKLKQVCVVLTLCFLTNWLSACQTITRYKCNNKDWAEIGVEDGRAGKIAE
YEFAEYDRSCSQAGAPIDKALYLASYQRGLEDYCSYETGRQQALDGLFED
DLCVENFDGRYDEGFAYGLLQLCTTYGGNRLGSLGLSYQETCRDRKEEDF
LIAYLGGLDNYIPDAEIRLSSLRGQLVFLESSMTTLK
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mRNA from alignment at P-canaliculata_contig107230:338..898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107230.955.1 ID=mRNA_P-canaliculata_contig107230.955.1|Name=mRNA_P-canaliculata_contig107230.955.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at P-canaliculata_contig107230:338..898+ (Pelvetia canaliculata dioecious)
ATGAAATTGAAACAGGTGTGCGTAGTGCTCACCCTCTGCTTTCTGACAAA
CTGGCTGAGTGCATGTCAGACAATAACCCGATACAAATGTAACAACAAAG
ATTGGGCAGAGATAGGTGTAGAGGATGGTCGGGCAGGAAAAATTGCCGAA
TACGAGTTTGCTGAGTACGATAGAAGTTGTTCACAAGCCGGAGCACCAAT
TGATAAAGCACTCTACCTGGCAAGTTATCAACGTGGTTTAGAGGACTACT
GTTCGTATGAAACCGGTAGGCAGCAGGCTCTGGATGGTTTGTTTGAAGAT
GATCTCTGTGTTGAAAATTTCGATGGAAGATATGACGAGGGCTTCGCGTA
CGGGCTTTTACAACTATGCACAACCTATGGTGGTAATAGATTGGGTTCGC
TTGGGCTCAGCTACCAGGAAACTTGCCGGGATAGAAAAGAGGAAGATTTT
CTCATTGCTTACCTCGGTGGTCTGGACAACTACATCCCGGATGCCGAGAT
TCGTCTGTCATCGCTGAGAGGTCAGCTTGTATTTCTGGAGTCATCGATGA
CTACACTAAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig107230:338..898+

>mRNA_P-canaliculata_contig107230.955.1 ID=mRNA_P-canaliculata_contig107230.955.1|Name=mRNA_P-canaliculata_contig107230.955.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at P-canaliculata_contig107230:338..898+ (Pelvetia canaliculata dioecious)
ATGAAATTGAAACAGGTGTGCGTAGTGCTCACCCTCTGCTTTCTGACAAA
CTGGCTGAGTGCATGTCAGACAATAACCCGATACAAATGTAACAACAAAG
ATTGGGCAGAGATAGGTGTAGAGGATGGTCGGGCAGGAAAAATTGCCGAA
TACGAGTTTGCTGAGTACGATAGAAGTTGTTCACAAGCCGGAGCACCAAT
TGATAAAGCACTCTACCTGGCAAGTTATCAACGTGGTTTAGAGGACTACT
GTTCGTATGAAACCGGTAGGCAGCAGGCTCTGGATGGTTTGTTTGAAGAT
GATCTCTGTGTTGAAAATTTCGATGGAAGATATGACGAGGGCTTCGCGTA
CGGGCTTTTACAACTATGCACAACCTATGGTGGTAATAGATTGGGTTCGC
TTGGGCTCAGCTACCAGGAAACTTGCCGGGATAGAAAAGAGGAAGATTTT
CTCATTGCTTACCTCGGTGGTCTGGACAACTACATCCCGGATGCCGAGAT
TCGTCTGTCATCGCTGAGAGGTCAGCTTGTATTTCTGGAGTCATCGATGA
CTACACTAAAGATGAAATTGAAACAGGTGTGCGTAGTGCTCACCCTCTGC
TTTCTGACAAACTGGCTGAGTGCATGTCAGACAATAACCCGATACAAATG
TAACAACAAAGATTGGGCAGAGATAGGTGTAGAGGATGGTCGGGCAGGAA
AAATTGCCGAATACGAGTTTGCTGAGTACGATAGAAGTTGTTCACAAGCC
GGAGCACCAATTGATAAAGCACTCTACCTGGCAAGTTATCAACGTGGTTT
AGAGGACTACTGTTCGTATGAAACCGGTAGGCAGCAGGCTCTGGATGGTT
TGTTTGAAGATGATCTCTGTGTTGAAAATTTCGATGGAAGATATGACGAG
GGCTTCGCGTACGGGCTTTTACAACTATGCACAACCTATGGTGGTAATAG
ATTGGGTTCGCTTGGGCTCAGCTACCAGGAAACTTGCCGGGATAGAAAAG
AGGAAGATTTTCTCATTGCTTACCTCGGTGGTCTGGACAACTACATCCCG
GATGCCGAGATTCGTCTGTCATCGCTGAGAGGTCAGCTTGTATTTCTGGA
GTCATCGATGACTACACTAAAG
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