mRNA_P-canaliculata_contig10716.945.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10716.945.1
Unique NamemRNA_P-canaliculata_contig10716.945.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: D7FGQ8_ECTSI (RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ8_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 9.090e-180
Identity = 276/421 (65.56%), Postives = 322/421 (76.48%), Query Frame = 1
Query:   25 DEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGDSWFVIRRYSDFLEFYINLPRSFIAIAPPLPPKSWRSLSFMSMTPAFLEDRRVALEVALRRLTINAVRADAVVQADLRAFLGFPPCA-----AGVDAEVVRHLVRVPSDLELALSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDSTERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVLADMA 1269
            +EE G L  V TAIPRVEVVRV G+ICCAEY ++VKR   GDSWFV+RRYSDFL  Y  LP    A   P+PPKSWRS+SF+SMTP FLE+RRVALEVALRRL I+AV++D VVQADLRAFLGFPPC      AGVD+ V R+L+R+P DLEL+L +R ++P PLL   RV +WML SGAAHK S+ EDREQY+ALV+V DE DWC  GG A+D++ A  A  TI  DVNRTN   S ERER+RR+LRAFALK P T YCQGMNSVALFLLRT   REDVAFWLL +LAT VI GHWE+L HI+ A A TVTIR LL E  P LLEHLD R LPPEVL CDFMLSLGCR+LPPTT+ R +DL+F EGGD L YI  AVL  AE +L+ VQGA ATSE LA  TA++ DAD ++++  ++MA
Sbjct:    8 EEEAGFLDGVVTAIPRVEVVRVSGTICCAEYQLQVKRR-RGDSWFVLRRYSDFLTLYERLPSDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADLRAFLGFPPCGGAGRLAGVDSHVARYLIRLPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGAGTVTIRMLLGERTPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALVYIAFAVLHLAEGNLVVVQGAPATSEALANCTASMQDADRLIEIARSEMA 423          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 517 bits (1332), Expect = 1.340e-172
Identity = 275/421 (65.32%), Postives = 325/421 (77.20%), Query Frame = 1
Query:   25 DEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGDSWFVIRRYSDFLEFYINLPRSFIAIAPPLPPKSWRSLSFMSMTPAFLEDRRVALEVALRRLTINAVRADAVVQADLRAFLGFPPCA-----AGVDAEVVRHLVRVPSDLELALSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDSTERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVLADMA 1269
            +EE G L  V TAIPRVEVVRV G+ICCAEY ++VKR+  GDSWFV+RRYSDFL  Y +LP   I +  P+PPKSWRS+SF+SMTP FLE+RRVALEVALRRL I+AV++D VVQAD+RAFLGFPPC      AGVD+ V ++L+RVP DLEL+L +R ++P PLL   RV +WML SGAAHK S+ EDREQY+ALV+V DE DWC  GG A+D++ A  A  TI  DVNRTN   S ERER+RR+LRAFALK P T YCQGMNSVALFLLRT   REDVAFWLL +LAT VI GHWE+L HI+ A   TVTIR LL E +P LLEHLD R LPPEVL CDFMLSLGCR+LPPTT+ R +DL+F EGGD L YI LAVL  AE  L+ VQGA ATSE LA  TA++ DAD ++++  ++MA
Sbjct:  527 EEEAGFLDGVVTAIPRVEVVRVSGTICCAEYQLQVKRK-RGDSWFVLRRYSDFLRLYEHLP---IDLHAPIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADVRAFLGFPPCEGAGRLAGVDSRVAQYLIRVPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGTGTVTIRMLLGERMPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALIYIALAVLHLAEGSLVVVQGAPATSEALAKCTASMQDADRLIEIARSEMA 942          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A835YP93_9STRA (Rab-GTPase-TBC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP93_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.880e-35
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  796 MNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDV 1173
            MN VALFLLRT + REDV+FWLL ALA  V P +WE    ++   A+   +R L    +P L++ LD  GLP E+LACD+MLSL CR LPP TVLR WD L  EG D+L ++ LAVLRFAE+D+L V
Sbjct:    1 MNFVALFLLRTARGREDVSFWLLRALACDVAPRYWEGTTSMARLRADLGVLRGLACARMPPLVKRLDDTGLPLELLACDWMLSLFCRVLPPRTVLRVWDWLLLEGADVLVFVALAVLRFAEEDVLQV 127          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A7S2BGU4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGU4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.670e-28
Identity = 69/175 (39.43%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  730 ERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKM 1251
            +R+RR+LRAF L  P  GYCQ MN VALFLLRTTK +E  AF LL  LA  V+PG+W  +  +     +   + K +   +P L +H+    +P ++ A  +++SL   ALPP ++ R WD LF +G  +L  + LA++R AE  LL +      +E L        DAD +V M
Sbjct:    1 QRLRRILRAFVLSKPCIGYCQAMNYVALFLLRTTKYQEHEAFQLLLTLAEQVVPGYW--VPDMVGVQVDMQVLHKAVDIFLPDLSDHMRDIRMPLDLFAIQWLVSLFSYALPPPSLCRIWDWLFLDGPSVLVSVTLAIMRRAESGLLGLYDLQDCAELLLNTARNWRDADELVDM 173          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A165Z822_DAUCS (Rab-GAP TBC domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165Z822_DAUCS)

HSP 1 Score: 121 bits (303), Expect = 5.920e-27
Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query:  496 PPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAF----RTIDEDVNRTNFG----DSTERER-VRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
            PP L   R  +W   SGAA K S TE    Y+ L+A                   AEG      + ID D+ RT  G    D+ E +  ++R+L  ++ +NP+ GYCQG+N VA  LL   K E+ AFW+L  L   V+     + Y  ++S    E    + LL +H P+L  HL+T      ++A ++ L L  ++LP  T LR WD+LF+EG ++L  + LA+    ED+L+  Q       R+ + T  L + D I+
Sbjct:  113 PPSL---RPKVWFAVSGAATKKS-TERNNYYNELLAA------------------AEGKVTVDTKQIDHDIPRTYPGHPYLDTKEGQASLKRVLVGYSFRNPNVGYCQGLNYVAALLLLVMKTEEEAFWMLAVLLEDVLAN---DCYTSNLSGCHVEQRVFKDLLIKHCPKLCAHLETLEFDVSIVATEWFLCLFAKSLPSETTLRVWDILFYEGTNVLFRVALALFMMKEDELVLTQNVGDAVNRIHLTTHRLFNPDDIL 348          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: UPI000D6291EA (TBC1 domain family member 2B-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D6291EA)

HSP 1 Score: 114 bits (284), Expect = 2.350e-24
Identity = 78/252 (30.95%), Postives = 119/252 (47.22%), Query Frame = 1
Query:  511 AFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
            A R  +W   SGAA K S   D      ++AV D               +   A + ID D+ RT  G    D+ E    VRR+L  ++ ++   GYCQG+N VA  LL   + E+ AFW+L  L   V+     + Y  ++S    E    + LL +  PRL  HL+  G    ++A ++ L L  ++LP  T +R WD+LF+EG  +L  I LA+ +  E++LL         + +   T  L D D ++
Sbjct:  116 ALRPKVWFSLSGAAKKKSTVPDSYYNDLIIAVAD---------------KVTPATKQIDHDLPRTFPGHPWLDTAEGHAAVRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMRTEEEAFWMLAVLLENVLVS---DCYTDNLSGCHVEQRVFKDLLSKKCPRLSAHLEAMGFDISLVATEWFLCLFSKSLPSETTMRVWDVLFYEGAQVLFNIALAIFKMKEEELLMTHYVGDAIKIIQNTTHHLFDPDDLL 349          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A5A7QTR1_STRAF (Ypt/Rab-GAP domain of gyp1p superfamily protein n=2 Tax=Orobanchaceae TaxID=91896 RepID=A0A5A7QTR1_STRAF)

HSP 1 Score: 110 bits (276), Expect = 3.690e-23
Identity = 74/254 (29.13%), Postives = 119/254 (46.85%), Query Frame = 1
Query:  517 RVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVL 1257
            R  +W   SGAA K S   D      + AV+D               +   + + ID D+ RT  G    D+ E    +RR+L  ++ ++   GYCQG+N VA  LL   K E+ AFW+L  L   V+   + + Y  ++S    +    R LL +  PR+  HL+T      ++  ++ + L  ++LP  T LR WD+LF+EG ++L  + LA+ +  E++LL           +   T  L D D ++   L
Sbjct:  124 RPKVWFTLSGAAKKKSTVPDSYYNDLITAVQD---------------KVTASTKQIDHDLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAAMLLLVMKTEEEAFWMLAVLLENVL---FNDCYTSNLSGCHVDQRVFRDLLTKKCPRIAAHLETLEFDVSLVCTEWFICLFSKSLPSETTLRVWDILFYEGANVLFNVALAIFKMNEEELLITHQVGDVINVIQRTTHHLFDPDELLTTAL 359          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A022RT64_ERYGU (Rab-GAP TBC domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RT64_ERYGU)

HSP 1 Score: 110 bits (275), Expect = 4.260e-23
Identity = 75/249 (30.12%), Postives = 113/249 (45.38%), Query Frame = 1
Query:  514 FRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGD-----STERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
            FR  +W   SGAA K S   D        AV               F     A + ID+D+ RT  G      S     +RR+L A++ ++   GYCQG+N VA  LL   K E+ AFW+L  L   V+       Y++S    +    R LL +  PR+  HL+       ++  ++ L L  ++LP  T LR WD+LF+EG ++L  + LA+ +  E++LL           +   T  L D D ++
Sbjct:  121 FRPKVWFSLSGAAKKKSTVPDSYYNDMTSAV---------------FDMVTPATKQIDQDLPRTFPGHPWLDTSDGHSALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLFNDCYT-YNLSGCHVDQRVFRDLLAKKCPRIATHLEGIDFDVSLVCTEWFLCLFSKSLPSETTLRVWDILFYEGANVLFNVALAIFKMNEEELLVTHQVGDVINVIQKTTHHLFDPDELL 353          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: S8CSG6_9LAMI (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CSG6_9LAMI)

HSP 1 Score: 107 bits (268), Expect = 3.290e-22
Identity = 74/250 (29.60%), Postives = 114/250 (45.60%), Query Frame = 1
Query:  517 RVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
            R  +W   SGAA K S   D      + AV                 +   A R ID D+ RT  G    D+ E    +RR+L  ++ ++   GYCQG+N VA  LL   K E+ AFW+L  L   V+     + Y  ++S    +    R LL +  PR+  HLD       +++ ++ + L  ++ P  T LR WD+LF+EG ++L  + LA+ +  ED+LL           +   T  L D D ++
Sbjct:  112 RPKVWFSLSGAAKKKSTVPDSYYNDLITAVE---------------GKTTSATRQIDHDLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLEDVLAN---DCYTNNLSGCHVDQRVFRDLLSKKCPRIAAHLDALEFDVSLVSTEWFICLFSKSFPTETTLRVWDVLFYEGANVLFNVALAIFKMNEDELLIAHQVGDVISIVQRSTHHLFDPDELL 343          
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A3F2RY14_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY14_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.420e-22
Identity = 85/270 (31.48%), Postives = 130/270 (48.15%), Query Frame = 1
Query:  472 LSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDS-------TERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELYHISAADAET--VTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMV 1254
            +++ ++S   +    R   +M  SGA+ K    E  E Y+ LV             +AE        FR I+ D++RT FG S       + R ++RR+LRA++L+NPS GYCQG+N +  FL+     E V FWLL      + PG+    Y  + AD +T  + +++L+ E +P+L E     GLP E+L   ++L L     P  TV R +D +F EG   +   ++A LR  E  LLD+         +     A  D DS +  V
Sbjct:  107 INTSLLSRAGIPRHLRERAYMSLSGASEK-QENEGAEYYANLVK------------EAETMETD--TFRQIELDIDRT-FGHSGTTVCTDSGRAQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLIADEEAV-FWLLSVFCEDLYPGY----YTPTMADIQTDMLVLKQLIAEELPQLDEFTSEVGLPLELLGSQWLLCLFTTTFPSETVFRVFDCIFTEGSSFVFPAIMAHLRRLEPALLDLSEFHGVLSSIKDAENACIDGDSFMDAV 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGQ8_ECTSI9.090e-18065.56RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JLI6_9PHAE1.340e-17265.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YP93_9STRA1.880e-3555.91Rab-GTPase-TBC domain-containing protein (Fragment... [more]
A0A7S2BGU4_9STRA2.670e-2839.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A165Z822_DAUCS5.920e-2732.95Rab-GAP TBC domain-containing protein n=1 Tax=Dauc... [more]
UPI000D6291EA2.350e-2430.95TBC1 domain family member 2B-like n=1 Tax=Cynara c... [more]
A0A5A7QTR1_STRAF3.690e-2329.13Ypt/Rab-GAP domain of gyp1p superfamily protein n=... [more]
A0A022RT64_ERYGU4.260e-2330.12Rab-GAP TBC domain-containing protein n=1 Tax=Eryt... [more]
S8CSG6_9LAMI3.290e-2229.60Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A3F2RY14_9STRA3.420e-2231.48Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10716contigP-canaliculata_contig10716:5916..8775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score524.2
Seed ortholog evalue5.5e-146
Seed eggNOG ortholog2880.D7FGQ8
KEGG koko:K20165
EggNOG free text desc.activation of GTPase activity
EggNOG OGsCOG5210@1,KOG2058@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-04_001220.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons8
Model size1269
Cds size1269
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10716.945.1prot_P-canaliculata_contig10716.945.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10716 5916..8775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.3744016-CDS-P-canaliculata_contig10716:5915..60291622815641.3744016-CDS-P-canaliculata_contig10716:5915..6029Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 5916..6029 -
1693494182.0286267-CDS-P-canaliculata_contig10716:5915..60291693494182.0286267-CDS-P-canaliculata_contig10716:5915..6029Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 5916..6029 -
1622815641.3880093-CDS-P-canaliculata_contig10716:6243..64511622815641.3880093-CDS-P-canaliculata_contig10716:6243..6451Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 6244..6451 -
1693494182.040925-CDS-P-canaliculata_contig10716:6243..64511693494182.040925-CDS-P-canaliculata_contig10716:6243..6451Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 6244..6451 -
1622815641.4002976-CDS-P-canaliculata_contig10716:6680..68351622815641.4002976-CDS-P-canaliculata_contig10716:6680..6835Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 6681..6835 -
1693494182.0522106-CDS-P-canaliculata_contig10716:6680..68351693494182.0522106-CDS-P-canaliculata_contig10716:6680..6835Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 6681..6835 -
1622815641.4155998-CDS-P-canaliculata_contig10716:7064..72981622815641.4155998-CDS-P-canaliculata_contig10716:7064..7298Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7065..7298 -
1693494182.075001-CDS-P-canaliculata_contig10716:7064..72981693494182.075001-CDS-P-canaliculata_contig10716:7064..7298Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7065..7298 -
1622815641.4287744-CDS-P-canaliculata_contig10716:7431..77071622815641.4287744-CDS-P-canaliculata_contig10716:7431..7707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7432..7707 -
1693494182.0892918-CDS-P-canaliculata_contig10716:7431..77071693494182.0892918-CDS-P-canaliculata_contig10716:7431..7707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7432..7707 -
1622815641.4423954-CDS-P-canaliculata_contig10716:7818..79741622815641.4423954-CDS-P-canaliculata_contig10716:7818..7974Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7819..7974 -
1693494182.102205-CDS-P-canaliculata_contig10716:7818..79741693494182.102205-CDS-P-canaliculata_contig10716:7818..7974Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 7819..7974 -
1622815641.4576697-CDS-P-canaliculata_contig10716:8288..83361622815641.4576697-CDS-P-canaliculata_contig10716:8288..8336Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 8289..8336 -
1693494182.112319-CDS-P-canaliculata_contig10716:8288..83361693494182.112319-CDS-P-canaliculata_contig10716:8288..8336Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 8289..8336 -
1622815641.467445-CDS-P-canaliculata_contig10716:8697..87751622815641.467445-CDS-P-canaliculata_contig10716:8697..8775Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 8698..8775 -
1693494182.1243138-CDS-P-canaliculata_contig10716:8697..87751693494182.1243138-CDS-P-canaliculata_contig10716:8697..8775Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10716 8698..8775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10716.945.1

>prot_P-canaliculata_contig10716.945.1 ID=prot_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=423bp
MGIAFEGTDEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGD
SWFVIRRYSDFLEFYINLPRSFIAIAPPLPPKSWRSLSFMSMTPAFLEDR
RVALEVALRRLTINAVRADAVVQADLRAFLGFPPCAAGVDAEVVRHLVRV
PSDLELALSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALV
AVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDSTERERVRRLL
RAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWE
ELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGC
RALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSER
LAMRTAALHDADSIVKMVLADMA
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mRNA from alignment at P-canaliculata_contig10716:5916..8775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10716.945.1 ID=mRNA_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2860bp|location=Sequence derived from alignment at P-canaliculata_contig10716:5916..8775- (Pelvetia canaliculata dioecious)
ATGGGTATTGCGTTTGAGGGGACGGATGAGGAGCTGGGCGGCTTGGGTGA CGTCACCACAGCTATCCCTCGCGTTGAGGTATGATTCTCAAGGGTCATAG ACAGCTGTGGCGACTGCGCGAATCTACTTGTCCAGGTTCCCGCTGTGGAT CTACCTGTGATCCATACTCAACATTTCCTGCTACTTGTAGATATTCCAGA CTGATCCTCTCTGAATGACCTGTGCCGCGGCGTTTCTACTATGTGCGGTG GGATTGAGGCCCCGTGAGACGCCACACATTTCCCATCTTGAAATTCGCTT ACATAAGGCCATGACGTCTTATTTGGCGGGCGGTTTGACGGTACGGTACG GTAAGGTGCGGTTCACGATAGACCGTCGCGTACAGAACAGCACATAAAAC GATTTCGCCTGGCCGCCCGCGTTCTTGCGTGCTTTCCAGGTCGTCCGCGT GTTGGGAAGCATATGCTGCGCGGAGTACCATGTAGAGGTGGGTTTGGCTC CACGAAGAAACCATTGATATGGGTCGCTAATTGTATTTATTGCATGTATG GTCACCACTAATAGCAGAGAGTGTGGATCACCCGGGTAAGGTTGCCAATT CTGCTCGTGGTCAGCTGAACAGGAAAAATGTATTTACCTCGCCCCATTCG CCCTTAAAAATTTGGTCTGTGGAGACAAATTCGGTCGTCCCGTCCCGCGT CAGCCTTCTCATTATCCACACTCAGCACAGTTGTTGGTTAAGCAGGGTAT GGTTCCAAGGCGACTTTCGTTTCTCGTGCCCATGTGTACCCTCTTTAACA GGTAAAACGAGAAGCCAATGGAGACAGCTGGTTCGTTATTCGACGATATT CCGACTTTCTGGAATTTTACATCAATTTGCCAAGATCTTTCATTGCCATC GCCCCTCCGCTCCCCCCCAAGAGCTGGCGAAGCCTTTCGTTCATGAGCAT GACACCGGTAAGCCAGTAAAAACCTTGAACTCGTTGGCTAATCAAACACG CCTCGTTTTGAACGTTTTAAGAACCCAGCCAATTCAATTTCCAAAGCTTC GTTTTCTTTTGCTTGCAGGCATTTCTGGAGGATCGACGAGTCGCGTTGGA AGTGGCCTTGCGGAGGTTGACCATCAATGCCGTTCGAGCAGACGCTGTTG TGCAAGCCGACTTGAGAGCATTTCTCGGTTTTCCTCCTTGCGCAGCCGGC GTGGACGCAGAAGTTGTACGTCATTTAGTTCGAGTGCCGTCGGACCTTGA GCTAGCTCTCTCCTCACGGATCATATCGCCGCCTCCACTGCTGAGCGCTT TCCGTGTCACGTTGTGGATGCTCTTTTCTGGGGCAGCTCACAAGGTCAGT TAAAGCTCCCCTGTGCCTACCTGAAGTATATATATGGGACACCTTCTCTA ACGTCAAAACCTCATGTTCCTTGATCTACCCCTAAGCACGTCCGGCCTGC TGTCTTGTCAACGTGCGCTCACGCCAGTGTTCTGTCACTGAGGACAGGGA GCAATATTCAGCGCTAGTGGCAGTGAGGGACGAGAACGACTGGTGTAGCG GTGGAGGTGACGCTGAGGACTTCGCGCGGGCCGAAGGGGCTTTTCGTACG ATAGATGAAGATGTCAATCGGACCAACTTCGGAGACAGTACGGAGAGAGA AAGGGTTCGACGCCTTTTAAGGGCCTTCGCTCTGAAAAACCCAAGCACGG GTTACTGCCAGGTGAGACCCCGGTCTTCATAATGCCATGCGTTAATATAG TTAATATAATAGCTTGATATAATAGCTGGAATGCTGGAGCGTTCATGAAG TTTTAGAGTCAACTAGGCGCCATGTTTCGCTTGACTCCTAGAATATCAAA ATATAACTATTTTTGGAATATGCTCATGGTTTGCTCCGCATAACAGGCCA TGAGTCTTGGGTCGCTTTCGCGTGACGCGTGTTGTTGCAGGGGATGAACT CCGTGGCGCTTTTTTTACTCCGAACAACAAAGCGCGAAGACGTGGCCTTC TGGCTGCTGGATGCTCTGGCTACTGCCGTCATTCCAGGTCACTGGGAAGA GCTATATCACATTTCTGCAGCCGATGCTGAGACTGTAACGATCAGGTAAA TAAAGTGTTGAAGCTGTTTCAAGAGATTGATTCCCCATCGTTCAGAAGGA CGTAACTAGGATCTCTTCGGTATCCAGCCTGAAACTATGCGTGAGATTGC CTACACGAATGGTTTCCTTAGATAATCCCTCAGCACCTCTTACCTGCAAC TGCAACAGTTATGAGACCCGACCCCCCCATTTTTCGCACTTGACAAACTT TTCTGTGACATCACAATGATTCAGGAAACTACTCCGTGAACACGTGCCGC GACTTCTAGAACACCTTGACACGCGCGGCCTGCCGCCAGAGGTGTTGGCA TGCGACTTCATGCTATCGCTGGGTTGCCGAGCACTCCCTCCGACGACCGT TTTGAGGTTTTGGGACTTGCTGTTCTTCGAAGGAGGAGACATCTTACAGT ACATCGTGCTGGCGGTGCTGAGGTTCGCCGAGGTGTGCTTGTAGGACCTT GTTAAGTCGGACAAGTGCACGATCAACATATACACTTTCATGTTGGCTCC TCCCTCGTTCTCTGTTGTATTTTCTAGTCTATTAAATAGTGAGTTGTCAT GTCGCGAGGGTGGGGTGAGCACGTATTGTTAAAAACACTCAAGAACTCGG TACACAAGGGCTCGTCGATTCGACACGATTTTTTGTTCCTTCACAGGACG ATCTCCTCGATGTGCAAGGAGCCTCGGCGACCTCGGAGCGTCTGGCGATG CGCACAGCCGCTTTGCATGATGCCGACAGCATTGTTAAAATGGTTTTAGC GGACATGGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10716:5916..8775-

>mRNA_P-canaliculata_contig10716.945.1 ID=mRNA_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at P-canaliculata_contig10716:5916..8775- (Pelvetia canaliculata dioecious)
ATGGGTATTGCGTTTGAGGGGACGGATGAGGAGCTGGGCGGCTTGGGTGA
CGTCACCACAGCTATCCCTCGCGTTGAGATGGGTATTGCGTTTGAGGGGA
CGGATGAGGAGCTGGGCGGCTTGGGTGACGTCACCACAGCTATCCCTCGC
GTTGAGGTCGTCCGCGTGTTGGGAAGCATATGCTGCGCGGAGTACCATGT
AGAGGTCGTCCGCGTGTTGGGAAGCATATGCTGCGCGGAGTACCATGTAG
AGGTAAAACGAGAAGCCAATGGAGACAGCTGGTTCGTTATTCGACGATAT
TCCGACTTTCTGGAATTTTACATCAATTTGCCAAGATCTTTCATTGCCAT
CGCCCCTCCGCTCCCCCCCAAGAGCTGGCGAAGCCTTTCGTTCATGAGCA
TGACACCGGTAAAACGAGAAGCCAATGGAGACAGCTGGTTCGTTATTCGA
CGATATTCCGACTTTCTGGAATTTTACATCAATTTGCCAAGATCTTTCAT
TGCCATCGCCCCTCCGCTCCCCCCCAAGAGCTGGCGAAGCCTTTCGTTCA
TGAGCATGACACCGGCATTTCTGGAGGATCGACGAGTCGCGTTGGAAGTG
GCCTTGCGGAGGTTGACCATCAATGCCGTTCGAGCAGACGCTGTTGTGCA
AGCCGACTTGAGAGCATTTCTCGGTTTTCCTCCTTGCGCAGCCGGCGTGG
ACGCAGAAGTTGTACGTCATTTAGTTCGAGTGCCGTCGGACCTTGAGCTA
GCTCTCTCCTCACGGATCATATCGCCGCCTCCACTGCTGAGCGCTTTCCG
TGTCACGTTGTGGATGCTCTTTTCTGGGGCAGCTCACAAGGCATTTCTGG
AGGATCGACGAGTCGCGTTGGAAGTGGCCTTGCGGAGGTTGACCATCAAT
GCCGTTCGAGCAGACGCTGTTGTGCAAGCCGACTTGAGAGCATTTCTCGG
TTTTCCTCCTTGCGCAGCCGGCGTGGACGCAGAAGTTGTACGTCATTTAG
TTCGAGTGCCGTCGGACCTTGAGCTAGCTCTCTCCTCACGGATCATATCG
CCGCCTCCACTGCTGAGCGCTTTCCGTGTCACGTTGTGGATGCTCTTTTC
TGGGGCAGCTCACAAGTGTTCTGTCACTGAGGACAGGGAGCAATATTCAG
CGCTAGTGGCAGTGAGGGACGAGAACGACTGGTGTAGCGGTGGAGGTGAC
GCTGAGGACTTCGCGCGGGCCGAAGGGGCTTTTCGTACGATAGATGAAGA
TGTCAATCGGACCAACTTCGGAGACAGTACGGAGAGAGAAAGGGTTCGAC
GCCTTTTAAGGGCCTTCGCTCTGAAAAACCCAAGCACGGGTTACTGCCAG
TGTTCTGTCACTGAGGACAGGGAGCAATATTCAGCGCTAGTGGCAGTGAG
GGACGAGAACGACTGGTGTAGCGGTGGAGGTGACGCTGAGGACTTCGCGC
GGGCCGAAGGGGCTTTTCGTACGATAGATGAAGATGTCAATCGGACCAAC
TTCGGAGACAGTACGGAGAGAGAAAGGGTTCGACGCCTTTTAAGGGCCTT
CGCTCTGAAAAACCCAAGCACGGGTTACTGCCAGGGGATGAACTCCGTGG
CGCTTTTTTTACTCCGAACAACAAAGCGCGAAGACGTGGCCTTCTGGCTG
CTGGATGCTCTGGCTACTGCCGTCATTCCAGGTCACTGGGAAGAGCTATA
TCACATTTCTGCAGCCGATGCTGAGACTGTAACGATCAGGGGATGAACTC
CGTGGCGCTTTTTTTACTCCGAACAACAAAGCGCGAAGACGTGGCCTTCT
GGCTGCTGGATGCTCTGGCTACTGCCGTCATTCCAGGTCACTGGGAAGAG
CTATATCACATTTCTGCAGCCGATGCTGAGACTGTAACGATCAGGAAACT
ACTCCGTGAACACGTGCCGCGACTTCTAGAACACCTTGACACGCGCGGCC
TGCCGCCAGAGGTGTTGGCATGCGACTTCATGCTATCGCTGGGTTGCCGA
GCACTCCCTCCGACGACCGTTTTGAGGTTTTGGGACTTGCTGTTCTTCGA
AGGAGGAGACATCTTACAGTACATCGTGCTGGCGGTGCTGAGGTTCGCCG
AGGAAACTACTCCGTGAACACGTGCCGCGACTTCTAGAACACCTTGACAC
GCGCGGCCTGCCGCCAGAGGTGTTGGCATGCGACTTCATGCTATCGCTGG
GTTGCCGAGCACTCCCTCCGACGACCGTTTTGAGGTTTTGGGACTTGCTG
TTCTTCGAAGGAGGAGACATCTTACAGTACATCGTGCTGGCGGTGCTGAG
GTTCGCCGAGGACGATCTCCTCGATGTGCAAGGAGCCTCGGCGACCTCGG
AGCGTCTGGCGATGCGCACAGCCGCTTTGCATGATGCCGACAGCATTGTT
AAAATGGTTTTAGCGGACATGGCCGACGATCTCCTCGATGTGCAAGGAGC
CTCGGCGACCTCGGAGCGTCTGGCGATGCGCACAGCCGCTTTGCATGATG
CCGACAGCATTGTTAAAATGGTTTTAGCGGACATGGCC
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