mRNA_P-canaliculata_contig10716.945.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: D7FGQ8_ECTSI (RabGAP/TBC protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ8_ECTSI) HSP 1 Score: 518 bits (1333), Expect = 9.090e-180 Identity = 276/421 (65.56%), Postives = 322/421 (76.48%), Query Frame = 1
Query: 25 DEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGDSWFVIRRYSDFLEFYINLPRSFIAIAPPLPPKSWRSLSFMSMTPAFLEDRRVALEVALRRLTINAVRADAVVQADLRAFLGFPPCA-----AGVDAEVVRHLVRVPSDLELALSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDSTERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVLADMA 1269
+EE G L V TAIPRVEVVRV G+ICCAEY ++VKR GDSWFV+RRYSDFL Y LP A P+PPKSWRS+SF+SMTP FLE+RRVALEVALRRL I+AV++D VVQADLRAFLGFPPC AGVD+ V R+L+R+P DLEL+L +R ++P PLL RV +WML SGAAHK S+ EDREQY+ALV+V DE DWC GG A+D++ A A TI DVNRTN S ERER+RR+LRAFALK P T YCQGMNSVALFLLRT REDVAFWLL +LAT VI GHWE+L HI+ A A TVTIR LL E P LLEHLD R LPPEVL CDFMLSLGCR+LPPTT+ R +DL+F EGGD L YI AVL AE +L+ VQGA ATSE LA TA++ DAD ++++ ++MA
Sbjct: 8 EEEAGFLDGVVTAIPRVEVVRVSGTICCAEYQLQVKRR-RGDSWFVLRRYSDFLTLYERLPSDLHA---PIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADLRAFLGFPPCGGAGRLAGVDSHVARYLIRLPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGAGTVTIRMLLGERTPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALVYIAFAVLHLAEGNLVVVQGAPATSEALANCTASMQDADRLIEIARSEMA 423
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE) HSP 1 Score: 517 bits (1332), Expect = 1.340e-172 Identity = 275/421 (65.32%), Postives = 325/421 (77.20%), Query Frame = 1
Query: 25 DEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGDSWFVIRRYSDFLEFYINLPRSFIAIAPPLPPKSWRSLSFMSMTPAFLEDRRVALEVALRRLTINAVRADAVVQADLRAFLGFPPCA-----AGVDAEVVRHLVRVPSDLELALSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDSTERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVLADMA 1269
+EE G L V TAIPRVEVVRV G+ICCAEY ++VKR+ GDSWFV+RRYSDFL Y +LP I + P+PPKSWRS+SF+SMTP FLE+RRVALEVALRRL I+AV++D VVQAD+RAFLGFPPC AGVD+ V ++L+RVP DLEL+L +R ++P PLL RV +WML SGAAHK S+ EDREQY+ALV+V DE DWC GG A+D++ A A TI DVNRTN S ERER+RR+LRAFALK P T YCQGMNSVALFLLRT REDVAFWLL +LAT VI GHWE+L HI+ A TVTIR LL E +P LLEHLD R LPPEVL CDFMLSLGCR+LPPTT+ R +DL+F EGGD L YI LAVL AE L+ VQGA ATSE LA TA++ DAD ++++ ++MA
Sbjct: 527 EEEAGFLDGVVTAIPRVEVVRVSGTICCAEYQLQVKRK-RGDSWFVLRRYSDFLRLYEHLP---IDLHAPIPPKSWRSISFLSMTPEFLEERRVALEVALRRLAISAVQSDVVVQADVRAFLGFPPCEGAGRLAGVDSRVAQYLIRVPVDLELSLPARAMAPVPLLPNLRVAMWMLLSGAAHKASIAEDREQYAALVSVTDEADWCRRGGSAKDYSLAARALETIRSDVNRTNVSSSAERERMRRVLRAFALKEPRTAYCQGMNSVALFLLRTAGGREDVAFWLLVSLATDVIRGHWEQLSHIATAGTGTVTIRMLLGERMPDLLEHLD-RNLPPEVLLCDFMLSLGCRSLPPTTLWRCFDLIFSEGGDALIYIALAVLHLAEGSLVVVQGAPATSEALAKCTASMQDADRLIEIARSEMA 942
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A835YP93_9STRA (Rab-GTPase-TBC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP93_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.880e-35 Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 796 MNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDV 1173
MN VALFLLRT + REDV+FWLL ALA V P +WE ++ A+ +R L +P L++ LD GLP E+LACD+MLSL CR LPP TVLR WD L EG D+L ++ LAVLRFAE+D+L V
Sbjct: 1 MNFVALFLLRTARGREDVSFWLLRALACDVAPRYWEGTTSMARLRADLGVLRGLACARMPPLVKRLDDTGLPLELLACDWMLSLFCRVLPPRTVLRVWDWLLLEGADVLVFVALAVLRFAEEDVLQV 127
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A7S2BGU4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGU4_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.670e-28 Identity = 69/175 (39.43%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 730 ERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTK-REDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKM 1251
+R+RR+LRAF L P GYCQ MN VALFLLRTTK +E AF LL LA V+PG+W + + + + K + +P L +H+ +P ++ A +++SL ALPP ++ R WD LF +G +L + LA++R AE LL + +E L DAD +V M
Sbjct: 1 QRLRRILRAFVLSKPCIGYCQAMNYVALFLLRTTKYQEHEAFQLLLTLAEQVVPGYW--VPDMVGVQVDMQVLHKAVDIFLPDLSDHMRDIRMPLDLFAIQWLVSLFSYALPPPSLCRIWDWLFLDGPSVLVSVTLAIMRRAESGLLGLYDLQDCAELLLNTARNWRDADELVDM 173
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A165Z822_DAUCS (Rab-GAP TBC domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165Z822_DAUCS) HSP 1 Score: 121 bits (303), Expect = 5.920e-27 Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query: 496 PPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAF----RTIDEDVNRTNFG----DSTERER-VRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
PP L R +W SGAA K S TE Y+ L+A AEG + ID D+ RT G D+ E + ++R+L ++ +NP+ GYCQG+N VA LL K E+ AFW+L L V+ + Y ++S E + LL +H P+L HL+T ++A ++ L L ++LP T LR WD+LF+EG ++L + LA+ ED+L+ Q R+ + T L + D I+
Sbjct: 113 PPSL---RPKVWFAVSGAATKKS-TERNNYYNELLAA------------------AEGKVTVDTKQIDHDIPRTYPGHPYLDTKEGQASLKRVLVGYSFRNPNVGYCQGLNYVAALLLLVMKTEEEAFWMLAVLLEDVLAN---DCYTSNLSGCHVEQRVFKDLLIKHCPKLCAHLETLEFDVSIVATEWFLCLFAKSLPSETTLRVWDILFYEGTNVLFRVALALFMMKEDELVLTQNVGDAVNRIHLTTHRLFNPDDIL 348
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: UPI000D6291EA (TBC1 domain family member 2B-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D6291EA) HSP 1 Score: 114 bits (284), Expect = 2.350e-24 Identity = 78/252 (30.95%), Postives = 119/252 (47.22%), Query Frame = 1
Query: 511 AFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
A R +W SGAA K S D ++AV D + A + ID D+ RT G D+ E VRR+L ++ ++ GYCQG+N VA LL + E+ AFW+L L V+ + Y ++S E + LL + PRL HL+ G ++A ++ L L ++LP T +R WD+LF+EG +L I LA+ + E++LL + + T L D D ++
Sbjct: 116 ALRPKVWFSLSGAAKKKSTVPDSYYNDLIIAVAD---------------KVTPATKQIDHDLPRTFPGHPWLDTAEGHAAVRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMRTEEEAFWMLAVLLENVLVS---DCYTDNLSGCHVEQRVFKDLLSKKCPRLSAHLEAMGFDISLVATEWFLCLFSKSLPSETTMRVWDVLFYEGAQVLFNIALAIFKMKEEELLMTHYVGDAIKIIQNTTHHLFDPDDLL 349
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A5A7QTR1_STRAF (Ypt/Rab-GAP domain of gyp1p superfamily protein n=2 Tax=Orobanchaceae TaxID=91896 RepID=A0A5A7QTR1_STRAF) HSP 1 Score: 110 bits (276), Expect = 3.690e-23 Identity = 74/254 (29.13%), Postives = 119/254 (46.85%), Query Frame = 1
Query: 517 RVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMVL 1257
R +W SGAA K S D + AV+D + + + ID D+ RT G D+ E +RR+L ++ ++ GYCQG+N VA LL K E+ AFW+L L V+ + + Y ++S + R LL + PR+ HL+T ++ ++ + L ++LP T LR WD+LF+EG ++L + LA+ + E++LL + T L D D ++ L
Sbjct: 124 RPKVWFTLSGAAKKKSTVPDSYYNDLITAVQD---------------KVTASTKQIDHDLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAAMLLLVMKTEEEAFWMLAVLLENVL---FNDCYTSNLSGCHVDQRVFRDLLTKKCPRIAAHLETLEFDVSLVCTEWFICLFSKSLPSETTLRVWDILFYEGANVLFNVALAIFKMNEEELLITHQVGDVINVIQRTTHHLFDPDELLTTAL 359
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A022RT64_ERYGU (Rab-GAP TBC domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RT64_ERYGU) HSP 1 Score: 110 bits (275), Expect = 4.260e-23 Identity = 75/249 (30.12%), Postives = 113/249 (45.38%), Query Frame = 1
Query: 514 FRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGD-----STERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELYHISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
FR +W SGAA K S D AV F A + ID+D+ RT G S +RR+L A++ ++ GYCQG+N VA LL K E+ AFW+L L V+ Y++S + R LL + PR+ HL+ ++ ++ L L ++LP T LR WD+LF+EG ++L + LA+ + E++LL + T L D D ++
Sbjct: 121 FRPKVWFSLSGAAKKKSTVPDSYYNDMTSAV---------------FDMVTPATKQIDQDLPRTFPGHPWLDTSDGHSALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLFNDCYT-YNLSGCHVDQRVFRDLLAKKCPRIATHLEGIDFDVSLVCTEWFLCLFSKSLPSETTLRVWDILFYEGANVLFNVALAIFKMNEEELLVTHQVGDVINVIQKTTHHLFDPDELL 353
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: S8CSG6_9LAMI (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CSG6_9LAMI) HSP 1 Score: 107 bits (268), Expect = 3.290e-22 Identity = 74/250 (29.60%), Postives = 114/250 (45.60%), Query Frame = 1
Query: 517 RVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFG----DSTE-RERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELY--HISAADAETVTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIV 1245
R +W SGAA K S D + AV + A R ID D+ RT G D+ E +RR+L ++ ++ GYCQG+N VA LL K E+ AFW+L L V+ + Y ++S + R LL + PR+ HLD +++ ++ + L ++ P T LR WD+LF+EG ++L + LA+ + ED+LL + T L D D ++
Sbjct: 112 RPKVWFSLSGAAKKKSTVPDSYYNDLITAVE---------------GKTTSATRQIDHDLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLEDVLAN---DCYTNNLSGCHVDQRVFRDLLSKKCPRIAAHLDALEFDVSLVSTEWFICLFSKSFPTETTLRVWDVLFYEGANVLFNVALAIFKMNEDELLIAHQVGDVISIVQRSTHHLFDPDELL 343
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Match: A0A3F2RY14_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY14_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.420e-22 Identity = 85/270 (31.48%), Postives = 130/270 (48.15%), Query Frame = 1
Query: 472 LSSRIISPPPLLSAFRVTLWMLFSGAAHKCSVTEDREQYSALVAVRDENDWCSGGGDAEDFARAEGAFRTIDEDVNRTNFGDS-------TERERVRRLLRAFALKNPSTGYCQGMNSVALFLLRTTKREDVAFWLLDALATAVIPGHWEELYHISAADAET--VTIRKLLREHVPRLLEHLDTRGLPPEVLACDFMLSLGCRALPPTTVLRFWDLLFFEGGDILQYIVLAVLRFAEDDLLDVQGASATSERLAMRTAALHDADSIVKMV 1254
+++ ++S + R +M SGA+ K E E Y+ LV +AE FR I+ D++RT FG S + R ++RR+LRA++L+NPS GYCQG+N + FL+ E V FWLL + PG+ Y + AD +T + +++L+ E +P+L E GLP E+L ++L L P TV R +D +F EG + ++A LR E LLD+ + A D DS + V
Sbjct: 107 INTSLLSRAGIPRHLRERAYMSLSGASEK-QENEGAEYYANLVK------------EAETMETD--TFRQIELDIDRT-FGHSGTTVCTDSGRAQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLIADEEAV-FWLLSVFCEDLYPGY----YTPTMADIQTDMLVLKQLIAEELPQLDEFTSEVGLPLELLGSQWLLCLFTTTFPSETVFRVFDCIFTEGSSFVFPAIMAHLRRLEPALLDLSEFHGVLSSIKDAENACIDGDSFMDAV 355 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10716.945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10716.945.1 >prot_P-canaliculata_contig10716.945.1 ID=prot_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=423bp MGIAFEGTDEELGGLGDVTTAIPRVEVVRVLGSICCAEYHVEVKREANGDback to top mRNA from alignment at P-canaliculata_contig10716:5916..8775- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10716.945.1 ID=mRNA_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2860bp|location=Sequence derived from alignment at P-canaliculata_contig10716:5916..8775- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10716:5916..8775- >mRNA_P-canaliculata_contig10716.945.1 ID=mRNA_P-canaliculata_contig10716.945.1|Name=mRNA_P-canaliculata_contig10716.945.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at P-canaliculata_contig10716:5916..8775- (Pelvetia canaliculata dioecious)back to top |