mRNA_P-canaliculata_contig107042.932.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107042.932.1
Unique NamemRNA_P-canaliculata_contig107042.932.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107042.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107042contigP-canaliculata_contig107042:347..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.5016253-UTR-P-canaliculata_contig107042:346..3761622815640.5016253-UTR-P-canaliculata_contig107042:346..376Pelvetia canaliculata dioeciousUTRP-canaliculata_contig107042 347..376 +
1693494181.5092356-UTR-P-canaliculata_contig107042:346..3761693494181.5092356-UTR-P-canaliculata_contig107042:346..376Pelvetia canaliculata dioeciousUTRP-canaliculata_contig107042 347..376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.5142496-CDS-P-canaliculata_contig107042:376..7271622815640.5142496-CDS-P-canaliculata_contig107042:376..727Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107042 377..727 +
1693494181.516619-CDS-P-canaliculata_contig107042:376..7271693494181.516619-CDS-P-canaliculata_contig107042:376..727Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107042 377..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107042.932.1prot_P-canaliculata_contig107042.932.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107042 377..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107042.932.1

>prot_P-canaliculata_contig107042.932.1 ID=prot_P-canaliculata_contig107042.932.1|Name=mRNA_P-canaliculata_contig107042.932.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MKIGEFTLNNMKRHAPGFFRCYRPASTFPGNFWVGAMEISVAPESGALIS
REYYQSADFDNRPNKTIELTGYLFRKGRHYTIISRDQASSSLSVALLPSV
IIENHRITNLTGAVLDM
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mRNA from alignment at P-canaliculata_contig107042:347..727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107042.932.1 ID=mRNA_P-canaliculata_contig107042.932.1|Name=mRNA_P-canaliculata_contig107042.932.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at P-canaliculata_contig107042:347..727+ (Pelvetia canaliculata dioecious)
GACCCTCTGTTTCATTCTCTACTCAATTTCATGAAAATAGGTGAGTTCAC
GCTCAACAACATGAAAAGACATGCCCCTGGTTTTTTTCGCTGTTATCGGC
CAGCAAGCACTTTCCCAGGGAACTTTTGGGTTGGAGCTATGGAAATCTCA
GTTGCTCCTGAAAGTGGTGCTCTGATATCCCGAGAGTACTATCAATCTGC
AGATTTTGATAACAGACCCAACAAAACAATCGAGCTAACCGGCTATCTGT
TTCGAAAGGGTAGACACTATACGATCATAAGTCGCGATCAAGCATCCTCA
TCACTGTCAGTCGCATTGTTACCTTCTGTGATTATAGAAAATCATAGAAT
TACAAACCTCACAGGCGCCGTACTAGATATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig107042:347..727+

>mRNA_P-canaliculata_contig107042.932.1 ID=mRNA_P-canaliculata_contig107042.932.1|Name=mRNA_P-canaliculata_contig107042.932.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig107042:347..727+ (Pelvetia canaliculata dioecious)
ATGAAAATAGGTGAGTTCACGCTCAACAACATGAAAAGACATGCCCCTGG
TTTTTTTCGCTGTTATCGGCCAGCAAGCACTTTCCCAGGGAACTTTTGGG
TTGGAGCTATGGAAATCTCAGTTGCTCCTGAAAGTGGTGCTCTGATATCC
CGAGAGTACTATCAATCTGCAGATTTTGATAACAGACCCAACAAAACAAT
CGAGCTAACCGGCTATCTGTTTCGAAAGGGTAGACACTATACGATCATAA
GTCGCGATCAAGCATCCTCATCACTGTCAGTCGCATTGTTACCTTCTGTG
ATTATAGAAAATCATAGAATTACAAACCTCACAGGCGCCGTACTAGATAT
GATGAAAATAGGTGAGTTCACGCTCAACAACATGAAAAGACATGCCCCTG
GTTTTTTTCGCTGTTATCGGCCAGCAAGCACTTTCCCAGGGAACTTTTGG
GTTGGAGCTATGGAAATCTCAGTTGCTCCTGAAAGTGGTGCTCTGATATC
CCGAGAGTACTATCAATCTGCAGATTTTGATAACAGACCCAACAAAACAA
TCGAGCTAACCGGCTATCTGTTTCGAAAGGGTAGACACTATACGATCATA
AGTCGCGATCAAGCATCCTCATCACTGTCAGTCGCATTGTTACCTTCTGT
GATTATAGAAAATCATAGAATTACAAACCTCACAGGCGCCGTACTAGATA
TG
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