mRNA_P-canaliculata_contig1070.925.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1070.925.1
Unique NamemRNA_P-canaliculata_contig1070.925.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.620e-24
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:   42 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 149
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.420e-23
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:   61 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 168
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.260e-23
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA ++ Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:   93 LTIEAAGQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 200
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5JYZ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.390e-23
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVI 348
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVI
Sbjct:   61 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI 163
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.310e-23
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:  512 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 619
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.500e-23
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:  841 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 948
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.590e-23
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct: 1128 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 1235
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.630e-23
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA +K Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct: 1332 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 1439
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.770e-22
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA ++ Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:  344 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 451
[Close]
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.840e-22
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   40 LQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRIGAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRDFGSLRTAHHKLLLRVIGFRCK 363
            L  E  GQR  QTTEF +LGG   +  DL  E+ +R  AAWA ++ Y+++L+DR      LK    + + ++A+LYGC +W+ R   +G L+T HH+LLLRVIG+R K
Sbjct:  456 LTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRK 563
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1070.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLH5_9PHAE3.620e-2445.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE1.420e-2345.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLX9_9PHAE3.260e-2344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYZ4_9PHAE6.390e-2344.66Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JEX7_9PHAE7.310e-2345.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE7.500e-2345.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE7.590e-2345.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE7.630e-2345.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.770e-2244.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE1.840e-2244.44Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1070contigP-canaliculata_contig1070:9429..9797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.6794329-CDS-P-canaliculata_contig1070:9428..97971622815639.6794329-CDS-P-canaliculata_contig1070:9428..9797Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1070 9429..9797 -
1693494181.2101505-CDS-P-canaliculata_contig1070:9428..97971693494181.2101505-CDS-P-canaliculata_contig1070:9428..9797Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1070 9429..9797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1070.925.1prot_P-canaliculata_contig1070.925.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1070 9429..9797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1070.925.1

>prot_P-canaliculata_contig1070.925.1 ID=prot_P-canaliculata_contig1070.925.1|Name=mRNA_P-canaliculata_contig1070.925.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
MNLWPDPNTASNALQTEVVGQRCKQTTEFVHLGGATIKNADLDTEMKYRI
GAAWASVKIYSSQLYDRRNTRLWLKIMSFKTKVMKAMLYGCASWTMRTRD
FGSLRTAHHKLLLRVIGFRCKNR
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mRNA from alignment at P-canaliculata_contig1070:9429..9797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1070.925.1 ID=mRNA_P-canaliculata_contig1070.925.1|Name=mRNA_P-canaliculata_contig1070.925.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig1070:9429..9797- (Pelvetia canaliculata dioecious)
ATGAACCTGTGGCCCGATCCCAATACAGCGTCAAACGCGCTGCAAACTGA
GGTGGTAGGCCAACGGTGTAAACAGACAACCGAATTTGTGCACCTTGGTG
GTGCTACCATTAAGAATGCGGACCTCGACACCGAGATGAAGTATCGCATC
GGCGCCGCTTGGGCGAGTGTCAAAATATACAGTTCCCAGTTGTACGACCG
ACGGAACACCCGGTTGTGGCTCAAGATCATGTCATTTAAAACAAAGGTTA
TGAAAGCTATGTTGTACGGATGTGCCTCGTGGACTATGCGCACTCGAGAC
TTTGGCAGCCTGCGTACCGCCCACCACAAGCTACTATTACGCGTCATCGG
CTTTCGGTGCAAAAATCGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig1070:9429..9797-

>mRNA_P-canaliculata_contig1070.925.1 ID=mRNA_P-canaliculata_contig1070.925.1|Name=mRNA_P-canaliculata_contig1070.925.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig1070:9429..9797- (Pelvetia canaliculata dioecious)
ATGAACCTGTGGCCCGATCCCAATACAGCGTCAAACGCGCTGCAAACTGA
GGTGGTAGGCCAACGGTGTAAACAGACAACCGAATTTGTGCACCTTGGTG
GTGCTACCATTAAGAATGCGGACCTCGACACCGAGATGAAGTATCGCATC
GGCGCCGCTTGGGCGAGTGTCAAAATATACAGTTCCCAGTTGTACGACCG
ACGGAACACCCGGTTGTGGCTCAAGATCATGTCATTTAAAACAAAGGTTA
TGAAAGCTATGTTGTACGGATGTGCCTCGTGGACTATGCGCACTCGAGAC
TTTGGCAGCCTGCGTACCGCCCACCACAAGCTACTATTACGCGTCATCGG
CTTTCGGTGCAAAAATCGTATGAACCTGTGGCCCGATCCCAATACAGCGT
CAAACGCGCTGCAAACTGAGGTGGTAGGCCAACGGTGTAAACAGACAACC
GAATTTGTGCACCTTGGTGGTGCTACCATTAAGAATGCGGACCTCGACAC
CGAGATGAAGTATCGCATCGGCGCCGCTTGGGCGAGTGTCAAAATATACA
GTTCCCAGTTGTACGACCGACGGAACACCCGGTTGTGGCTCAAGATCATG
TCATTTAAAACAAAGGTTATGAAAGCTATGTTGTACGGATGTGCCTCGTG
GACTATGCGCACTCGAGACTTTGGCAGCCTGCGTACCGCCCACCACAAGC
TACTATTACGCGTCATCGGCTTTCGGTGCAAAAATCGT
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