mRNA_P-canaliculata_contig106982.922.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106982.922.1
Unique NamemRNA_P-canaliculata_contig106982.922.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig106982.922.1 vs. uniprot
Match: A0A0F9M017_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9M017_9ZZZZ)

HSP 1 Score: 86.7 bits (213), Expect = 1.610e-16
Identity = 70/205 (34.15%), Postives = 101/205 (49.27%), Query Frame = 1 
Query:    1 LGLAFFQTPIGPVGTGLSQNQTLSENADSQYVTAGSENNSLDESLGS-----DKTPEQRKSPLFLGSQVNPKHFTNNKNPARTATFESSLQRFAALESVQAQLKITGNPTLLNETLADGL------LTPETINDDPALGDQFTRPGYIKVNIKYPSDK---SLTGTKE---FWYDGFYYIFQIANEFSDGAFTQTIDLFSLPSSS 564
            +GLAF QT       G   N  +    D+  + A  EN     S+ S     +K   + K+P+F  + VN     N +    +  F + L R AALESV+A + I GNP L+++T   G        T E  +    L +    PG +K+NI  P      S T T E   FWYDG+YY++ I ++FSDG FTQ +++ SLP+ S
Sbjct:  202 MGLAFLQTIASTNTIGTGTNTIVGTKIDNVTLIASPENPKDVASVDSKGKIKEKILIRSKTPIFPSTNVNNVFEKNIRGALDSTLFSAMLSRHAALESVEAMVTIHGNPYLMSQTNRRGSDRERKGNTSEEGDLSIILQNWDFMPGLVKLNIFMPKTTDTPSSTATFERERFWYDGYYYLYGINHKFSDGQFTQDLNMVSLPNKS 406
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106982.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0F9M017_9ZZZZ1.610e-1634.15Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106982contigP-canaliculata_contig106982:2..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.0899475-CDS-P-canaliculata_contig106982:1..5651622815639.0899475-CDS-P-canaliculata_contig106982:1..565Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106982 2..565 +
1693494180.812683-CDS-P-canaliculata_contig106982:1..5651693494180.812683-CDS-P-canaliculata_contig106982:1..565Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106982 2..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106982.922.1prot_P-canaliculata_contig106982.922.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106982 2..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106982.922.1

>prot_P-canaliculata_contig106982.922.1 ID=prot_P-canaliculata_contig106982.922.1|Name=mRNA_P-canaliculata_contig106982.922.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=188bp
LGLAFFQTPIGPVGTGLSQNQTLSENADSQYVTAGSENNSLDESLGSDKT
PEQRKSPLFLGSQVNPKHFTNNKNPARTATFESSLQRFAALESVQAQLKI
TGNPTLLNETLADGLLTPETINDDPALGDQFTRPGYIKVNIKYPSDKSLT
GTKEFWYDGFYYIFQIANEFSDGAFTQTIDLFSLPSSS
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mRNA from alignment at P-canaliculata_contig106982:2..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106982.922.1 ID=mRNA_P-canaliculata_contig106982.922.1|Name=mRNA_P-canaliculata_contig106982.922.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at P-canaliculata_contig106982:2..565+ (Pelvetia canaliculata dioecious)
CTGGGTCTTGCATTCTTTCAGACACCAATTGGTCCTGTAGGAACAGGATT
ATCGCAAAACCAAACTTTATCAGAAAATGCAGATTCGCAGTATGTAACAG
CAGGTAGTGAAAATAATTCACTTGACGAATCACTTGGATCGGACAAAACA
CCAGAACAACGAAAAAGTCCATTGTTCTTAGGTTCTCAAGTAAATCCAAA
ACACTTTACGAATAATAAGAATCCAGCGCGAACAGCTACATTTGAATCTT
CATTACAACGATTTGCAGCTCTCGAAAGCGTACAAGCACAACTTAAAATA
ACAGGCAATCCAACATTGTTAAATGAAACATTGGCAGATGGACTATTGAC
CCCAGAAACAATAAATGACGATCCAGCACTGGGCGATCAGTTTACAAGAC
CTGGGTATATTAAAGTTAATATAAAATACCCAAGTGATAAAAGTTTAACG
GGCACCAAAGAATTTTGGTATGATGGCTTTTATTATATATTTCAAATTGC
TAATGAATTTTCTGATGGTGCATTTACACAAACAATTGACTTGTTTAGTT
TACCGTCATCTTCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig106982:2..565+

>mRNA_P-canaliculata_contig106982.922.1 ID=mRNA_P-canaliculata_contig106982.922.1|Name=mRNA_P-canaliculata_contig106982.922.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at P-canaliculata_contig106982:2..565+ (Pelvetia canaliculata dioecious)
CTGGGTCTTGCATTCTTTCAGACACCAATTGGTCCTGTAGGAACAGGATT
ATCGCAAAACCAAACTTTATCAGAAAATGCAGATTCGCAGTATGTAACAG
CAGGTAGTGAAAATAATTCACTTGACGAATCACTTGGATCGGACAAAACA
CCAGAACAACGAAAAAGTCCATTGTTCTTAGGTTCTCAAGTAAATCCAAA
ACACTTTACGAATAATAAGAATCCAGCGCGAACAGCTACATTTGAATCTT
CATTACAACGATTTGCAGCTCTCGAAAGCGTACAAGCACAACTTAAAATA
ACAGGCAATCCAACATTGTTAAATGAAACATTGGCAGATGGACTATTGAC
CCCAGAAACAATAAATGACGATCCAGCACTGGGCGATCAGTTTACAAGAC
CTGGGTATATTAAAGTTAATATAAAATACCCAAGTGATAAAAGTTTAACG
GGCACCAAAGAATTTTGGTATGATGGCTTTTATTATATATTTCAAATTGC
TAATGAATTTTCTGATGGTGCATTTACACAAACAATTGACTTGTTTAGTT
TACCGTCATCTTCTCTGGGTCTTGCATTCTTTCAGACACCAATTGGTCCT
GTAGGAACAGGATTATCGCAAAACCAAACTTTATCAGAAAATGCAGATTC
GCAGTATGTAACAGCAGGTAGTGAAAATAATTCACTTGACGAATCACTTG
GATCGGACAAAACACCAGAACAACGAAAAAGTCCATTGTTCTTAGGTTCT
CAAGTAAATCCAAAACACTTTACGAATAATAAGAATCCAGCGCGAACAGC
TACATTTGAATCTTCATTACAACGATTTGCAGCTCTCGAAAGCGTACAAG
CACAACTTAAAATAACAGGCAATCCAACATTGTTAAATGAAACATTGGCA
GATGGACTATTGACCCCAGAAACAATAAATGACGATCCAGCACTGGGCGA
TCAGTTTACAAGACCTGGGTATATTAAAGTTAATATAAAATACCCAAGTG
ATAAAAGTTTAACGGGCACCAAAGAATTTTGGTATGATGGCTTTTATTAT
ATATTTCAAATTGCTAATGAATTTTCTGATGGTGCATTTACACAAACAAT
TGACTTGTTTAGTTTACCGTCATCTTCT
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