mRNA_P-canaliculata_contig106906.916.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106906.916.1
Unique NamemRNA_P-canaliculata_contig106906.916.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: UPI00167BA625 (autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167BA625)

HSP 1 Score: 454 bits (1167), Expect = 2.110e-148
Identity = 221/305 (72.46%), Postives = 263/305 (86.23%), Query Frame = 1
Query:    1 IVGTDVLSYTVATAGNLTVGDLNFLGEGDTPFLFNTNLSLSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            IVGT+ LSYT+A AGNLT+GDL  LG GD+PFL+ T+L L+D NTLVVTLDLR+PT S+  GGLGLDQVQAAAFG VVDG FQ  AV +AL+S++ LGNAFSNI+ A+DFYAA+NQILPEFSGAA QFVLANVDGAVGAVG+HLD  RRSP+KPGGAW++EF YFADR  AG SEQYRG GFGF+GG+DT+FGPFHAVGV+A FASTE+EDVVG+D+PLD++TYQLG YAGYE+ GF+FDV+GG G +EFEQNR V VGDF G A  DW+G HANG VRAGY + ++++ WARPS+S+DYLYL+E
Sbjct:  685 IVGTNTLSYTLANAGNLTIGDLTSLGAGDSPFLYRTSLGLADDNTLVVTLDLRNPTESIEAGGLGLDQVQAAAFGQVVDGVFQNGAVMEALASTATLGNAFSNITDANDFYAAYNQILPEFSGAAHQFVLANVDGAVGAVGNHLDATRRSPDKPGGAWIQEFFYFADRERAGNSEQYRGTGFGFAGGIDTSFGPFHAVGVNAGFASTEVEDVVGIDDPLDVKTYQLGAYAGYESNGFNFDVFGGVGHNEFEQNRRVIVGDFGGVANADWSGLHANGAVRAGYTLPISEKFWARPSLSVDYLYLNE 989          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: UPI00047C3C18 (autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00047C3C18)

HSP 1 Score: 347 bits (891), Expect = 6.590e-108
Identity = 181/306 (59.15%), Postives = 225/306 (73.53%), Query Frame = 1
Query:    1 IVGTDVLSYTVATAGN-LTVGDLNFLGEGDTPFLFNTNLSLSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            +VG D  ++T+A AG  LTVGD+  L   D+P+LFN++  +   N LV+TLDLR+         LGLDQVQ+AA+   V           AL S+++LG+AF+NI++  DF AA+NQILPEFS AA+QFVLANVDGA GAV +HLD+ RRSP+KPGGAW++EFAYFADR LAGLSEQYRG GFGF+ GLD A GPFHAVGV+  FASTEIEDVVG+DEPLD+ T Q G YAG+ +G  S D Y GGG ++FEQNR V +  F G A+GDW+G H NG VRAGY++ L D+ W RP+VS+DYL L E
Sbjct:  703 VVGIDQTAFTIAQAGGTLTVGDIATLASADSPYLFNSSYDVIG-NDLVITLDLRNAAE------LGLDQVQSAAYTPAVQ----------ALRSNTDLGDAFANITSQSDFNAAYNQILPEFSAAARQFVLANVDGATGAVANHLDSVRRSPDKPGGAWLQEFAYFADRDLAGLSEQYRGHGFGFAAGLDRAIGPFHAVGVNVGFASTEIEDVVGIDEPLDVVTIQGGAYAGWASGNLSVDAYAGGGYNDFEQNRRVRINTFSGAAQGDWSGTHINGSVRAGYDMELNDKFWFRPTVSVDYLRLSE 991          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A8J3G2Y9_9PROT (Autotransporter domain-containing protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G2Y9_9PROT)

HSP 1 Score: 334 bits (857), Expect = 4.230e-103
Identity = 177/315 (56.19%), Postives = 227/315 (72.06%), Query Frame = 1
Query:    1 IVGTDVL-----SYTVATAGNLTVGDLNFLG-EGDTPFLFNTNLSLSDPNTLVVTLDLRDPTASVADGGLGLDQVQA----AAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            ++  DVL     ++++A+A NLT+GDL+ L  + D  FLF+T  +L++ N LV+T+DLR+ +A      LGLD+ Q     +AFG          A   AL ++++LGN  +N+ +A +FYAA+NQ+LPEF+ AA+QFVLAN DGA GAVG+HLD+ARRS +KPGGAW++EFAYFADR LAGLSEQYRGEGFGF+GGLDT  GPFHAVGV+  FASTE+EDVVGVDEPL + T   G YAGY  G    D Y GGG+++FEQNR V VGDF G + GDWNG H +G +RAGY++    R WARP VSLDY+ L E
Sbjct:  684 LINADVLGGVAPTFSIASASNLTIGDLSALNSQDDGSFLFDTAYALNN-NDLVITVDLRESSA------LGLDRSQIGINQSAFG----------ATLQALQNNTDLGNEVANLGSASEFYAAYNQLLPEFAAAARQFVLANSDGATGAVGNHLDSARRSQDKPGGAWIQEFAYFADRELAGLSEQYRGEGFGFTGGLDTEIGPFHAVGVNFGFASTEVEDVVGVDEPLGVTTLLAGLYAGYATGALGIDAYVGGGLNQFEQNRRVQVGDFLGQSTGDWNGTHVSGSLRAGYDIEFGKRYWARPVVSLDYMRLSE 981          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A848V7W9_9PROT (Autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V7W9_9PROT)

HSP 1 Score: 319 bits (818), Expect = 1.910e-97
Identity = 164/302 (54.30%), Postives = 219/302 (72.52%), Query Frame = 1
Query:   22 SYTVATAGN-LTV-GDLNFLGEGDTPFLFNTNLSL--SDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            S+T+  AG  LT+ G +N L   ++PF++ TN +L  ++ N L++TLDLR   A      +GLD  Q+AAFG+           FDAL ++  L  AF NI+  D+F  + NQ+LPEF+ AA+ FV+ANVDGAVGAVGSHLD AR+S ++ GGAW++EF YFADR LAGLSEQYRG GFGF+GGLDT+FGPFH  GV+  FASTEIEDV+G+DEPLD+ T+Q G Y G+E G FS D+YGGGG +EF+QNR+V +G+F  +A+G W+G H N  +R GY++ L+ ++WARPS S+DYL + E
Sbjct:  701 SFTLLYAGGALTLEGTVNSLVSFESPFMYETNFALDPNNANALLITLDLRSAEA------MGLDGAQSAAFGTT----------FDALIANPTLAQAFVNITDGDEFRGSLNQLLPEFAAAARHFVVANVDGAVGAVGSHLDNARQSQDQGGGAWVQEFTYFADRDLAGLSEQYRGFGFGFTGGLDTSFGPFHTAGVNFGFASTEIEDVLGIDEPLDVMTFQGGLYGGFEAGDFSLDIYGGGGFNEFDQNRLVEIGNFSDSAQGSWSGTHVNASLRGGYDLALSKKLWARPSFSIDYLRMSE 986          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A7Y1SR24_9PROT (Autotransporter domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y1SR24_9PROT)

HSP 1 Score: 306 bits (783), Expect = 1.190e-92
Identity = 167/313 (53.35%), Postives = 214/313 (68.37%), Query Frame = 1
Query:    1 IVGTDVLSYTVATAGNLTVGDLNF------LGEGDTPFLFNTNL--SLSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            ++    +++ +A AG    G L+F      L    TPFL+NTN   S++DPNTLV+TLDLR  +       LGLD VQAAAF S           F+AL ++  LG+AF+ I+    F AA+NQ+LPEF+ +A+QFVLANVDGA GAVGSHL+TARRSPE+PGGAW+EEFAYFADR LAGLSEQ+RG GFG +GGLDT+FGPF  VGV+  FASTE+EDV+GVDEPLD+ T Q G YAGY+ G    D+Y GGG ++FE +R V +G +   A GDW G H N    AGY+++   + + RPS +  YL L+E
Sbjct:  658 VIDDPTIAFEIARAG----GTLSFDELAGSLRSDATPFLYNTNFTRSVTDPNTLVLTLDLRSTSE------LGLDNVQAAAFTSA----------FEALQNAPNLGSAFTGITDQVSFNAAYNQLLPEFAASARQFVLANVDGATGAVGSHLNTARRSPERPGGAWIEEFAYFADRDLAGLSEQFRGYGFGITGGLDTSFGPFQTVGVNFGFASTEVEDVLGVDEPLDVLTLQGGLYAGYQVGKLGIDLYAGGGYNDFEASRNVEIGTYSAAARGDWKGTHYNASASAGYDISF-GKYYVRPSATFSYLRLNE 949          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A2G2GK36_9PROT (Autotransporter domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GK36_9PROT)

HSP 1 Score: 292 bits (747), Expect = 1.830e-87
Identity = 158/302 (52.32%), Postives = 202/302 (66.89%), Query Frame = 1
Query:   22 SYTVATAG--NLTVGDLNFLGEGDTPFLFNTNLS--LSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            S+T+A AG  N+ V  LN      TPFL+NT+ S   +D NTLV+TLD+R          LGLD  Q A F S           F+AL     LGNAF +I+    F AAFNQ++PEF+GAA+QFV+ANVDGAVGAVG+HL+ ARRS ++ GGAW+EEFAY+ADRSLAG+SEQYRG GFG +GG DTA GPFH VG++  FA+TEIEDV+GVDEP D+ T QLG YAG + G    D+Y G G ++FE NR V +GDF  +   DW+G H N    AGY+++   + + RPS ++ YL + E
Sbjct:  672 SFTIAQAGTLNIDVAALNVERSAQTPFLYNTSFSRAANDANTLVLTLDVRSTQE------LGLDTPQTALFTSA----------FEALQDHVALGNAFVSITDQTSFNAAFNQLMPEFAGAARQFVIANVDGAVGAVGTHLNNARRSQDRTGGAWIEEFAYYADRSLAGISEQYRGHGFGITGGFDTAIGPFHTVGINLGFATTEIEDVLGVDEPFDVLTVQLGGYAGLQRGKLGIDLYAGVGYNDFEANRNVRIGDFDQSTRSDWSGTHYNASASAGYDISF-GKYFVRPSATITYLNMHE 956          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A2G2MY68_9PROT (Autotransporter domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MY68_9PROT)

HSP 1 Score: 289 bits (739), Expect = 2.440e-86
Identity = 154/301 (51.16%), Postives = 203/301 (67.44%), Query Frame = 1
Query:   22 SYTVATAGNLTVGDLNFLGEGD-TPFLFNTNLSL--SDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            S+T+  AG LT G       G+ +PFL+NT  S   +DPNTL++TLDLR    SV +  LGLD  QAAAF S           F+AL +S  LG AF  ++    F AA+ Q+LPEF+ AA+QFV+ANVDG  GA+GSHL+ ARRS +K GG W++EFAY+ADRSL+G SEQ+RG GFG +GG DT+FGPFH  GV+  FA+T++EDV+GVD+P+D+ T Q G Y G E G    D+Y GGG ++FE NR V +G+F  TA G+W+G H NG V AGY +N   + + RP++ L YL + E
Sbjct:  670 SFTIVRAGTLTTGASFGTTRGENSPFLYNTVFSRDPNDPNTLIMTLDLR----SVEE--LGLDTAQAAAFESA----------FEALQNSDSLGAAFVGLTDQQSFTAAYTQVLPEFAAAARQFVMANVDGTTGAIGSHLNNARRSQDKSGGLWIQEFAYYADRSLSGQSEQFRGYGFGITGGFDTSFGPFHTAGVNIGFATTQVEDVLGVDDPMDVLTLQTGVYGGLEFGNIGVDLYAGGGYNDFESNRRVEIGNFNQTAAGNWSGSHLNGSVNAGYNINF-GKYYVRPAIGLSYLRMSE 953          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A420WM94_9PROT (Uncharacterized protein with beta-barrel porin domain n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WM94_9PROT)

HSP 1 Score: 289 bits (740), Expect = 2.800e-86
Identity = 164/312 (52.56%), Postives = 202/312 (64.74%), Query Frame = 1
Query:   19 LSYTVATAG--NLTVGDLNFL----GEGDTPFLFNTNLS---LSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYEN----GGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            +S+T+A+A   +L    L  L    G    PFL+N N     +     LVVT+DLR+         LGLD  Q+ A    +           A  ++S LG A SNI+  +DF  AFNQ++PEF+ AA++FV+ANVDGA GAVG+HLD ARRSP+KPGGAW++EFAYFADR LAGLSEQYRG GFG SGGLD A+GPFHAVGV+  FASTEIEDVVG DEPLD+ T Q G YAG  N    G    + Y GGG + FEQ R V + DF G A  D++G H N   R GYEV L+D+ W RP+VSLDYL L++
Sbjct:  700 VSFTLASANTLDLAASTLELLNATDGSAALPFLYNFNYEEALIGGQEALVVTVDLRNAEQ------LGLDTAQSGALEPAIG----------AFVANSALGAAVSNITNQEDFNDAFNQLMPEFAAAAREFVVANVDGATGAVGNHLDAARRSPDKPGGAWIQEFAYFADRDLAGLSEQYRGAGFGMSGGLDVAWGPFHAVGVNVGFASTEIEDVVGQDEPLDVVTLQGGLYAGLMNTFGGGVLGSEFYVGGGYNSFEQERRVRIDDFLGRASADYSGTHINASARTGYEVELSDKFWVRPAVSLDYLRLNQ 995          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: A0A2G2IZV8_9PROT (Autotransporter domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IZV8_9PROT)

HSP 1 Score: 281 bits (718), Expect = 2.480e-83
Identity = 150/301 (49.83%), Postives = 198/301 (65.78%), Query Frame = 1
Query:   22 SYTVATAGNLTVG-DLNFLGEGDTPFLFNTNL--SLSDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            ++ +A A  L +   L+ L    TPFL+NT    S +D  TL++TLD+R          LGLD  QAA F S           F+AL + ++LG AF  I+   +F +A+NQ+LPEF+ A++QFVLANVDGA GAV SHL  ARRS ++PGGAW+EEFAY+ADRSL GLSEQ+RG GFG +GG D A GPFH VGV+  FA+TE+EDV+G DEPLD+ T QLG YAGY+ G    DVY G G ++FE NR V +GDF  +   DW+G H N  + AGY+++   + + RP+++  YL L E
Sbjct:  674 AFIIAQAATLNIDTSLDSLRSNQTPFLYNTTFLRSPTDSGTLIMTLDVRSTQE------LGLDASQAALFTSA----------FEALQNINDLGTAFVRITDQTEFNSAYNQLLPEFAAASRQFVLANVDGATGAVASHLANARRSQDRPGGAWIEEFAYYADRSLEGLSEQFRGYGFGITGGFDVAVGPFHTVGVNIGFATTEVEDVLGNDEPLDVLTIQLGGYAGYQTGALGIDVYAGVGYNDFEANRNVVIGDFNKSTSADWSGVHYNASLSAGYDISFGKKYFIRPAIAATYLSLSE 958          
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Match: UPI00036CB0A0 (autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036CB0A0)

HSP 1 Score: 279 bits (714), Expect = 9.430e-83
Identity = 146/301 (48.50%), Postives = 198/301 (65.78%), Query Frame = 1
Query:   22 SYTVATAGNLTVGD-LNFLGEGDTPFLFNTNLSL--SDPNTLVVTLDLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNAFSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRSPEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGVSASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEFEQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDYLYLDE 915
            ++T+  AG LT+GD ++     + PFL++T +SL  ++ N L+ TL LR          LGLD  Q AAF           A F A  + S+LG AF+ ++T + F AA+NQILPEF+ AA +FV +NVDGA GAV +HL+ AR S EKPGG W+EEFAYFADR L GLS+ YRG GFGF+GGLDT +GPFH VGV+ S+++TE+EDV+G+D+PL++ T+Q G Y G E G    D Y G G + FE  R +++G F   AEGDW G+H N     GY+ ++  R +ARP+V++ YL L E
Sbjct:  677 TFTLINAGTLTLGDDISTYQPENAPFLYDTQISLDPTNANALIATLRLRSTQE------LGLDSTQTAAF----------DAAFGAFGADSDLGAAFAGLTTQETFNAAYNQILPEFNAAAGRFVFSNVDGATGAVATHLNNARLSDEKPGGVWVEEFAYFADRELVGLSDAYRGYGFGFTGGLDTQWGPFHTVGVNLSYSATEVEDVIGIDDPLNVSTFQTGIYGGIERGNIYADGYVGAGYNSFESRRNITIGSFARQAEGDWQGYHYNATASVGYDFDIGSRYFARPAVTVTYLSLKE 961          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106906.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167BA6252.110e-14872.46autotransporter outer membrane beta-barrel domain-... [more]
UPI00047C3C186.590e-10859.15autotransporter outer membrane beta-barrel domain-... [more]
A0A8J3G2Y9_9PROT4.230e-10356.19Autotransporter domain-containing protein n=1 Tax=... [more]
A0A848V7W9_9PROT1.910e-9754.30Autotransporter outer membrane beta-barrel domain-... [more]
A0A7Y1SR24_9PROT1.190e-9253.35Autotransporter domain-containing protein n=2 Tax=... [more]
A0A2G2GK36_9PROT1.830e-8752.32Autotransporter domain-containing protein n=1 Tax=... [more]
A0A2G2MY68_9PROT2.440e-8651.16Autotransporter domain-containing protein n=1 Tax=... [more]
A0A420WM94_9PROT2.800e-8652.56Uncharacterized protein with beta-barrel porin dom... [more]
A0A2G2IZV8_9PROT2.480e-8349.83Autotransporter domain-containing protein n=1 Tax=... [more]
UPI00036CB0A09.430e-8348.50autotransporter outer membrane beta-barrel domain-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106906contigP-canaliculata_contig106906:3..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score348.2
Seed ortholog evalue3.9e-93
Seed eggNOG ortholog1121948.AUAC01000003_gene2228
EggNOG free text desc.Autotransporter beta-domain
EggNOG OGs1N0PT@1224,2TTFH@28211,43WEJ@69657,COG4625@1,COG4625@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.790589-CDS-P-canaliculata_contig106906:2..9171622815638.790589-CDS-P-canaliculata_contig106906:2..917Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106906 3..917 +
1693494180.7304406-CDS-P-canaliculata_contig106906:2..9171693494180.7304406-CDS-P-canaliculata_contig106906:2..917Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106906 3..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106906.916.1prot_P-canaliculata_contig106906.916.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106906 3..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106906.916.1

>prot_P-canaliculata_contig106906.916.1 ID=prot_P-canaliculata_contig106906.916.1|Name=mRNA_P-canaliculata_contig106906.916.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=305bp
IVGTDVLSYTVATAGNLTVGDLNFLGEGDTPFLFNTNLSLSDPNTLVVTL
DLRDPTASVADGGLGLDQVQAAAFGSVVDGQFQGSAVFDALSSSSELGNA
FSNISTADDFYAAFNQILPEFSGAAKQFVLANVDGAVGAVGSHLDTARRS
PEKPGGAWMEEFAYFADRSLAGLSEQYRGEGFGFSGGLDTAFGPFHAVGV
SASFASTEIEDVVGVDEPLDIRTYQLGTYAGYENGGFSFDVYGGGGISEF
EQNRIVSVGDFFGTAEGDWNGFHANGLVRAGYEVNLTDRIWARPSVSLDY
LYLDE
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mRNA from alignment at P-canaliculata_contig106906:3..917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106906.916.1 ID=mRNA_P-canaliculata_contig106906.916.1|Name=mRNA_P-canaliculata_contig106906.916.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at P-canaliculata_contig106906:3..917+ (Pelvetia canaliculata dioecious)
ATCGTCGGCACAGACGTTTTGTCTTACACAGTGGCGACCGCCGGCAATTT GACCGTGGGCGATCTCAACTTTCTTGGGGAAGGCGATACGCCGTTTCTCT TTAATACAAACCTCAGCCTCTCTGATCCGAATACTCTGGTCGTAACGTTA GACCTTCGCGACCCGACTGCATCAGTGGCCGACGGCGGCCTCGGACTGGA CCAAGTTCAAGCCGCTGCATTCGGTAGCGTCGTGGACGGTCAGTTCCAAG GCAGCGCAGTTTTTGATGCTCTGTCATCGTCATCCGAACTCGGCAATGCC TTCTCTAATATCTCAACAGCGGACGATTTTTACGCGGCCTTTAATCAGAT TTTACCGGAATTCTCAGGCGCGGCGAAACAGTTCGTGCTGGCCAATGTGG ACGGGGCTGTCGGCGCGGTTGGGTCTCACCTTGATACCGCCCGACGCTCT CCGGAAAAACCGGGCGGCGCCTGGATGGAAGAGTTTGCCTACTTTGCAGA CCGCTCCTTAGCCGGACTTTCAGAACAATATCGCGGAGAGGGCTTTGGCT TCTCGGGCGGATTGGACACGGCGTTTGGGCCGTTTCATGCGGTCGGCGTA AGCGCAAGTTTCGCGAGTACCGAAATCGAGGATGTTGTCGGCGTCGATGA ACCGCTCGACATCCGCACCTATCAGCTTGGCACTTATGCCGGATATGAAA ATGGTGGGTTCAGTTTCGACGTCTATGGCGGCGGCGGTATCAGTGAATTT GAACAGAACCGTATCGTGTCGGTTGGTGACTTCTTCGGAACCGCGGAAGG TGATTGGAACGGCTTCCATGCCAACGGACTGGTTCGCGCCGGTTACGAAG TCAATTTGACAGACAGAATTTGGGCCCGCCCCAGTGTCTCGCTCGATTAT CTTTATCTGGATGAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig106906:3..917+

>mRNA_P-canaliculata_contig106906.916.1 ID=mRNA_P-canaliculata_contig106906.916.1|Name=mRNA_P-canaliculata_contig106906.916.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at P-canaliculata_contig106906:3..917+ (Pelvetia canaliculata dioecious)
ATCGTCGGCACAGACGTTTTGTCTTACACAGTGGCGACCGCCGGCAATTT
GACCGTGGGCGATCTCAACTTTCTTGGGGAAGGCGATACGCCGTTTCTCT
TTAATACAAACCTCAGCCTCTCTGATCCGAATACTCTGGTCGTAACGTTA
GACCTTCGCGACCCGACTGCATCAGTGGCCGACGGCGGCCTCGGACTGGA
CCAAGTTCAAGCCGCTGCATTCGGTAGCGTCGTGGACGGTCAGTTCCAAG
GCAGCGCAGTTTTTGATGCTCTGTCATCGTCATCCGAACTCGGCAATGCC
TTCTCTAATATCTCAACAGCGGACGATTTTTACGCGGCCTTTAATCAGAT
TTTACCGGAATTCTCAGGCGCGGCGAAACAGTTCGTGCTGGCCAATGTGG
ACGGGGCTGTCGGCGCGGTTGGGTCTCACCTTGATACCGCCCGACGCTCT
CCGGAAAAACCGGGCGGCGCCTGGATGGAAGAGTTTGCCTACTTTGCAGA
CCGCTCCTTAGCCGGACTTTCAGAACAATATCGCGGAGAGGGCTTTGGCT
TCTCGGGCGGATTGGACACGGCGTTTGGGCCGTTTCATGCGGTCGGCGTA
AGCGCAAGTTTCGCGAGTACCGAAATCGAGGATGTTGTCGGCGTCGATGA
ACCGCTCGACATCCGCACCTATCAGCTTGGCACTTATGCCGGATATGAAA
ATGGTGGGTTCAGTTTCGACGTCTATGGCGGCGGCGGTATCAGTGAATTT
GAACAGAACCGTATCGTGTCGGTTGGTGACTTCTTCGGAACCGCGGAAGG
TGATTGGAACGGCTTCCATGCCAACGGACTGGTTCGCGCCGGTTACGAAG
TCAATTTGACAGACAGAATTTGGGCCCGCCCCAGTGTCTCGCTCGATTAT
CTTTATCTGGATGAAATCGTCGGCACAGACGTTTTGTCTTACACAGTGGC
GACCGCCGGCAATTTGACCGTGGGCGATCTCAACTTTCTTGGGGAAGGCG
ATACGCCGTTTCTCTTTAATACAAACCTCAGCCTCTCTGATCCGAATACT
CTGGTCGTAACGTTAGACCTTCGCGACCCGACTGCATCAGTGGCCGACGG
CGGCCTCGGACTGGACCAAGTTCAAGCCGCTGCATTCGGTAGCGTCGTGG
ACGGTCAGTTCCAAGGCAGCGCAGTTTTTGATGCTCTGTCATCGTCATCC
GAACTCGGCAATGCCTTCTCTAATATCTCAACAGCGGACGATTTTTACGC
GGCCTTTAATCAGATTTTACCGGAATTCTCAGGCGCGGCGAAACAGTTCG
TGCTGGCCAATGTGGACGGGGCTGTCGGCGCGGTTGGGTCTCACCTTGAT
ACCGCCCGACGCTCTCCGGAAAAACCGGGCGGCGCCTGGATGGAAGAGTT
TGCCTACTTTGCAGACCGCTCCTTAGCCGGACTTTCAGAACAATATCGCG
GAGAGGGCTTTGGCTTCTCGGGCGGATTGGACACGGCGTTTGGGCCGTTT
CATGCGGTCGGCGTAAGCGCAAGTTTCGCGAGTACCGAAATCGAGGATGT
TGTCGGCGTCGATGAACCGCTCGACATCCGCACCTATCAGCTTGGCACTT
ATGCCGGATATGAAAATGGTGGGTTCAGTTTCGACGTCTATGGCGGCGGC
GGTATCAGTGAATTTGAACAGAACCGTATCGTGTCGGTTGGTGACTTCTT
CGGAACCGCGGAAGGTGATTGGAACGGCTTCCATGCCAACGGACTGGTTC
GCGCCGGTTACGAAGTCAATTTGACAGACAGAATTTGGGCCCGCCCCAGT
GTCTCGCTCGATTATCTTTATCTGGATGAA
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