mRNA_P-canaliculata_contig106811.906.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106811.906.1
Unique NamemRNA_P-canaliculata_contig106811.906.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A7X0H4A6_9BACT (Arylsulfatase A-like enzyme n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H4A6_9BACT)

HSP 1 Score: 305 bits (780), Expect = 2.770e-99
Identity = 151/218 (69.27%), Postives = 175/218 (80.28%), Query Frame = 1
Query:   28 KRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGLAR 681
            KRNLLI+L HGLRSDAL+DEREWPLPTPHLVDLA RGVRLVLS+A+  DPG MTSVLTGLHARQHGQL   DD  P  + D LP WL   GYHT GVG+VG+ A+LLD++ VT GV   +P P+RCWY AAAR+RGHA ALAQQRRQR R GP+APDRL+LEPEEDIDGFIA  A +A+  +P D+PWA+FV FSGPGN+LPPP+ +D LV    LA+
Sbjct:    4 KRNLLIVLAHGLRSDALSDEREWPLPTPHLVDLAERGVRLVLSSASPADPGGMTSVLTGLHARQHGQLR--DDEQPQPLRDGLPAWLADAGYHTVGVGEVGAFASLLDESLVTEGVANPEPKPNRCWYTAAARSRGHAPALAQQRRQRLRSGPLAPDRLMLEPEEDIDGFIAAQAAEALGRMPEDKPWAMFVVFSGPGNELPPPMYYDGLVEGADLAK 219          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A2D5ZBR7_9BACT (Sulfatase domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5ZBR7_9BACT)

HSP 1 Score: 195 bits (495), Expect = 1.600e-56
Identity = 107/220 (48.64%), Postives = 132/220 (60.00%), Query Frame = 1
Query:   25 PKRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGLARA 684
            P+RNLL++L  GLRSDAL+D   WP  TP+L  +  R  RL+ ++A   D G + S+LT LHARQHG L    D G   +    P WL A+GYH   VG VG++A  L+D      V   D   DRC Y A    RGH  A+  QRRQR R GP  PD L LE ++DIDGFIA  A   ++ +P D+PWAL V FSGPGNDLPPP+ FDQ+     L  A
Sbjct:    2 PRRNLLVILTQGLRSDALSDAEAWPRVTPNLDQICQRSRRLIATSACPADNGGLISLLTCLHARQHGCL----DPGEHVVATGWPRWLIAQGYHVTAVGCVGALAPHLEDQVFVENVGKLDS--DRCTYLARMDRRGHLKAVKLQRRQRLRHGPFEPDHLSLEADDDIDGFIANEATARMKKMPLDKPWALLVVFSGPGNDLPPPIPFDQVADPASLESA 215          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A2D6LKG8_9BACT (Sulfatase domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D6LKG8_9BACT)

HSP 1 Score: 185 bits (469), Expect = 9.980e-53
Identity = 98/210 (46.67%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   31 RNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLV 660
            RN++I+L HGLR+DA+ D + WPL T ++  L  RG RL+ ++A   D GAM S+LTG HARQHG L  + + G   + D  P  L   GY+ AGVG V  I   +D++ +   VE   PT   C Y AA R  G    L QQR QR+R GP  P RL+++P++DIDG+I + A + +  +P DRPWAL V FSGPGN+LPPP  +  LV
Sbjct:    5 RNMVIILTHGLRNDAIGDAQHWPLRTTYMHKLMQRGTRLIGTSACPADSGAMISLLTGRHARQHGHLDQMANPGRHIVHDGFPAVLHKAGYYLAGVGCVAPIMASMDESLLVQQVEHVRPTG--CQYMAAMRNAGQLDVLVQQREQRQRYGPFDPQRLVIDPDQDIDGYIGRRAQEQLLRMPTDRPWALIVMFSGPGNELPPPPLYQALV 212          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A3C0EQS8_9BACT (Sulfatase domain-containing protein n=2 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0EQS8_9BACT)

HSP 1 Score: 176 bits (446), Expect = 2.340e-49
Identity = 98/216 (45.37%), Postives = 136/216 (62.96%), Query Frame = 1
Query:   28 KRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGL 675
            +RNL+I++ HGLRSDAL+D   WP+ TP+L  L  R +RL+ +AA+  DP +M  +LTGLHARQHG ++  D +      +  P  L+  GYH AGVG + SIA  LD +   A + V+DP    C Y   A  RG   A+ +QR+QR + GP   D+  +EP+EDID FI+Q A  A++ +P+ +PWAL V FSGPGN+LP P  +D L   + L
Sbjct:    4 RRNLIIVVGHGLRSDALSDAEVWPIHTPNLDKLCQRSLRLIGTAASPADPSSMMCLLTGLHARQHG-ISATDQSQ--TRYEGFPALLKDAGYHLAGVGCISSIAHHLDISIPVADLSVSDPKD--CAYLNTAAQRGCLDAILKQRQQRAKYGPFTADQQAIEPDEDIDNFISQQADIALKTMPSHKPWALLVFFSGPGNNLPAPRMYDDLADIDHL 214          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A7T4YED3_9BACT (Sulfatase-like hydrolase/transferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7T4YED3_9BACT)

HSP 1 Score: 172 bits (437), Expect = 8.190e-48
Identity = 105/237 (44.30%), Postives = 140/237 (59.07%), Query Frame = 1
Query:   13 LPTQPKRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQ---HGQLTTVDDAGPLA------------MTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVA-DPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGL 675
            + TQP  NLL +LP G RSDA++DE  WPL T HL  LA RG R+V ++A+  DP A  +++TGLH RQ   H QLT  D +   A            ++ +L  +L+  GYHTAG+G V    T LD +     ++V   P      Y    R RG  +A+ +QR+ R+R GP  PDRLLL+P +DIDGFIA+ A   +  LP ++PWALFV F+GP + LPPP  +D LVST  L
Sbjct:    1 MKTQP--NLLFILPRGFRSDAISDEHSWPLATAHLEALARRGSRMVTTSASPADPFAFDTLMTGLHPRQLSNHLQLTDQDLSEGKADPQFIRHDSQRQLSHSLASYLQEAGYHTAGIGLVRPFLTHLDQSICLEDLDVIRQPRATEDLYYRHLRKRGLLAAIMKQRQTRQRFGPFNPDRLLLDPVDDIDGFIARQAEAVIPTLPTNKPWALFVVFAGPDSHLPPPTIYDGLVSTRHL 235          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A2E2B306_9BACT (Sulfatase domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B306_9BACT)

HSP 1 Score: 162 bits (411), Expect = 3.500e-44
Identity = 89/216 (41.20%), Postives = 126/216 (58.33%), Query Frame = 1
Query:   28 KRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGL 675
            +RNL+I++ HGLRSDAL+D   WP+ TP+L  L  + +RL+ +AA+  DP ++ S++TGLHARQHG  T              P  L+  GYH  GVG +  +   LD A   A + V DP+  +C Y   A   G    +  QR+QR   GP   ++  +EP+ DID FI+  A  A+ ++P+DRPWAL V +SGPGN+LP P  +D L   + L
Sbjct:    4 RRNLIIVVGHGLRSDALSDAEVWPVHTPNLDQLCQKSLRLIGTAASPADPQSVMSLITGLHARQHGITTPARFQSLNREFAGFPALLKDSGYHLVGVGNLTPLIEQLDVAIPVADLSVTDPS--QCAYLNTAVQHGCLETVLNQRKQRAMHGPFTTEQQAIEPDHDIDHFISDQAQRALENMPSDRPWALMVFYSGPGNNLPAPRMYDDLAEVDHL 217          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A2D5YTH6_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5YTH6_9PLAN)

HSP 1 Score: 130 bits (326), Expect = 6.170e-34
Identity = 90/219 (41.10%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   31 RNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLVLSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASALAQQRRQRR-RGGPI---APDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGL 675
            RN+L+++  G R+DA      WP+ TPHL  LAG G+ ++ +A       A+ S+ TG H RQHG    +DD  PL      PG  +  G H AGVG+VG IA LLD A + A V+     PD C Y   A A  H   L Q +RQ R + GP    A D  L  P  DIDGFI   A+  +  LP D+PW   VA +GPGN LP P  F  ++    L
Sbjct:    5 RNILLIIGSGHRADAYGAADIWPVLTPHLDALAGDGLDMICAAHAP----ALISLFTGQHPRQHG---VIDDDAPLPAITGFPGQCQQGGCHLAGVGRVGPIAPLLDQATIVADVDQ-HHDPD-CQYLDFA-ANLHLLDLIQTQRQHRAQHGPFDLAASD--LDNPAHDIDGFITDRAIQTIDALPRDQPWVTIVALTGPGNHLPAPKHFHDMIDPAAL 211          
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Match: A0A517YRI8_9BACT (Choline-sulfatase n=2 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YRI8_9BACT)

HSP 1 Score: 125 bits (315), Expect = 2.130e-30
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 1
Query:  145 LVLSAATTTDPGAMTSVLTGLHARQ-HGQLTT-----VDDAG-----PLAMTD---ALPGWLRAEGYHTAGVGQVGSIATLLDDARVTAGVEV---ADPTPDRCWYAAAARARGHASALAQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALFVAFSGPGNDLPPPLGFDQLVSTEGL 675
            +V +A++  DP A  S++TGLHARQ  G L       VD+ G     P +      +L G+LR  GYHTAGVG V    T LD +     +++   +  T D   Y    R RG  +A+ +QR  R+R GP  P+RLLLEP +DIDGFIA+ A + +  LP DRPWALF+  +GP + LPPP  +D LVST+ L
Sbjct:    1 MVTTASSPADPLAFDSLITGLHARQMSGHLVATDEDLVDEEGEKNVRPYSQRQLDVSLAGYLRDAGYHTAGVGLVRPFLTHLDQSVCLEDLDIVRQSRATED--LYYRHLRKRGLLAAIMKQRMTRKRYGPFKPERLLLEPCDDIDGFIARQAEEMIPTLPEDRPWALFIVMAGPDSHLPPPTIYDGLVSTKHL 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106811.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7X0H4A6_9BACT2.770e-9969.27Arylsulfatase A-like enzyme n=1 Tax=Algisphaera ag... [more]
A0A2D5ZBR7_9BACT1.600e-5648.64Sulfatase domain-containing protein n=1 Tax=Phycis... [more]
A0A2D6LKG8_9BACT9.980e-5346.67Sulfatase domain-containing protein n=1 Tax=Phycis... [more]
A0A3C0EQS8_9BACT2.340e-4945.37Sulfatase domain-containing protein n=2 Tax=Phycis... [more]
A0A7T4YED3_9BACT8.190e-4844.30Sulfatase-like hydrolase/transferase n=1 Tax=Planc... [more]
A0A2E2B306_9BACT3.500e-4441.20Sulfatase domain-containing protein n=1 Tax=Phycis... [more]
A0A2D5YTH6_9PLAN6.170e-3441.10Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517YRI8_9BACT2.130e-3043.30Choline-sulfatase n=2 Tax=Poriferisphaera corsica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106811contigP-canaliculata_contig106811:244..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size684
Cds size684
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.1086032-CDS-P-canaliculata_contig106811:243..9271622815638.1086032-CDS-P-canaliculata_contig106811:243..927Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106811 244..927 +
1693494180.3730402-CDS-P-canaliculata_contig106811:243..9271693494180.3730402-CDS-P-canaliculata_contig106811:243..927Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106811 244..927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106811.906.1prot_P-canaliculata_contig106811.906.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106811 244..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106811.906.1

>prot_P-canaliculata_contig106811.906.1 ID=prot_P-canaliculata_contig106811.906.1|Name=mRNA_P-canaliculata_contig106811.906.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=228bp
MSQVLPTQPKRNLLILLPHGLRSDALADEREWPLPTPHLVDLAGRGVRLV
LSAATTTDPGAMTSVLTGLHARQHGQLTTVDDAGPLAMTDALPGWLRAEG
YHTAGVGQVGSIATLLDDARVTAGVEVADPTPDRCWYAAAARARGHASAL
AQQRRQRRRGGPIAPDRLLLEPEEDIDGFIAQLAVDAVRDLPADRPWALF
VAFSGPGNDLPPPLGFDQLVSTEGLARA
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mRNA from alignment at P-canaliculata_contig106811:244..927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106811.906.1 ID=mRNA_P-canaliculata_contig106811.906.1|Name=mRNA_P-canaliculata_contig106811.906.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig106811:244..927+ (Pelvetia canaliculata dioecious)
ATGTCCCAGGTTTTGCCCACGCAACCCAAGCGCAATCTGCTGATTCTGCT GCCCCACGGCCTGCGCAGCGACGCGCTGGCCGACGAACGCGAGTGGCCGC TGCCCACGCCCCATCTGGTGGATCTGGCCGGGCGGGGCGTGCGGTTGGTG CTCAGTGCGGCGACCACGACCGACCCCGGGGCGATGACCAGCGTGCTGAC CGGGCTGCACGCCCGGCAGCACGGTCAGCTGACCACCGTCGACGACGCCG GCCCCCTCGCGATGACCGACGCGCTGCCCGGCTGGCTGCGGGCCGAGGGG TACCACACCGCCGGGGTGGGCCAGGTGGGTTCGATCGCGACCCTGCTGGA CGACGCCCGGGTGACCGCGGGGGTGGAAGTGGCCGACCCCACCCCCGACC GCTGCTGGTACGCCGCCGCCGCCCGGGCCCGGGGCCACGCCTCGGCGCTG GCCCAGCAACGCCGGCAGCGGCGGCGGGGCGGTCCCATCGCGCCCGACCG CCTGCTGCTCGAGCCCGAAGAAGACATCGACGGCTTCATCGCCCAGTTGG CGGTGGACGCCGTCCGTGACCTGCCCGCGGACCGGCCGTGGGCCCTGTTC GTGGCGTTCTCGGGGCCGGGCAACGACCTGCCGCCGCCGCTGGGCTTCGA CCAGCTCGTGAGCACCGAAGGCCTGGCCCGCGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig106811:244..927+

>mRNA_P-canaliculata_contig106811.906.1 ID=mRNA_P-canaliculata_contig106811.906.1|Name=mRNA_P-canaliculata_contig106811.906.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at P-canaliculata_contig106811:244..927+ (Pelvetia canaliculata dioecious)
ATGTCCCAGGTTTTGCCCACGCAACCCAAGCGCAATCTGCTGATTCTGCT
GCCCCACGGCCTGCGCAGCGACGCGCTGGCCGACGAACGCGAGTGGCCGC
TGCCCACGCCCCATCTGGTGGATCTGGCCGGGCGGGGCGTGCGGTTGGTG
CTCAGTGCGGCGACCACGACCGACCCCGGGGCGATGACCAGCGTGCTGAC
CGGGCTGCACGCCCGGCAGCACGGTCAGCTGACCACCGTCGACGACGCCG
GCCCCCTCGCGATGACCGACGCGCTGCCCGGCTGGCTGCGGGCCGAGGGG
TACCACACCGCCGGGGTGGGCCAGGTGGGTTCGATCGCGACCCTGCTGGA
CGACGCCCGGGTGACCGCGGGGGTGGAAGTGGCCGACCCCACCCCCGACC
GCTGCTGGTACGCCGCCGCCGCCCGGGCCCGGGGCCACGCCTCGGCGCTG
GCCCAGCAACGCCGGCAGCGGCGGCGGGGCGGTCCCATCGCGCCCGACCG
CCTGCTGCTCGAGCCCGAAGAAGACATCGACGGCTTCATCGCCCAGTTGG
CGGTGGACGCCGTCCGTGACCTGCCCGCGGACCGGCCGTGGGCCCTGTTC
GTGGCGTTCTCGGGGCCGGGCAACGACCTGCCGCCGCCGCTGGGCTTCGA
CCAGCTCGTGAGCACCGAAGGCCTGGCCCGCGCGATGTCCCAGGTTTTGC
CCACGCAACCCAAGCGCAATCTGCTGATTCTGCTGCCCCACGGCCTGCGC
AGCGACGCGCTGGCCGACGAACGCGAGTGGCCGCTGCCCACGCCCCATCT
GGTGGATCTGGCCGGGCGGGGCGTGCGGTTGGTGCTCAGTGCGGCGACCA
CGACCGACCCCGGGGCGATGACCAGCGTGCTGACCGGGCTGCACGCCCGG
CAGCACGGTCAGCTGACCACCGTCGACGACGCCGGCCCCCTCGCGATGAC
CGACGCGCTGCCCGGCTGGCTGCGGGCCGAGGGGTACCACACCGCCGGGG
TGGGCCAGGTGGGTTCGATCGCGACCCTGCTGGACGACGCCCGGGTGACC
GCGGGGGTGGAAGTGGCCGACCCCACCCCCGACCGCTGCTGGTACGCCGC
CGCCGCCCGGGCCCGGGGCCACGCCTCGGCGCTGGCCCAGCAACGCCGGC
AGCGGCGGCGGGGCGGTCCCATCGCGCCCGACCGCCTGCTGCTCGAGCCC
GAAGAAGACATCGACGGCTTCATCGCCCAGTTGGCGGTGGACGCCGTCCG
TGACCTGCCCGCGGACCGGCCGTGGGCCCTGTTCGTGGCGTTCTCGGGGC
CGGGCAACGACCTGCCGCCGCCGCTGGGCTTCGACCAGCTCGTGAGCACC
GAAGGCCTGGCCCGCGCG
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