mRNA_P-canaliculata_contig10672.896.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10672.896.1
Unique NamemRNA_P-canaliculata_contig10672.896.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 2.330e-91
Identity = 152/202 (75.25%), Postives = 168/202 (83.17%), Query Frame = 1 
Query:  406 GERGE--GARVVSPAPCGAAELWATFCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCLAS 1005
            GERG    A V +     A ELWA FCKVR DLVTPLE D PWI+  ++ARVEGFG+HT  KLVGFIKASLPDWKK+IQNRN  APR SPSV+IVC+GARRCVEVMKHLTAFRCQVVKLFAKHLK+EEQKVML+KG FPL VGTPGR+RALAA+GSLRLD   L+ILD EKNVKGR+VLDMDGV+ DTMA L+D VRP L S
Sbjct:  150 GERGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 351
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.230e-44
Identity = 109/266 (40.98%), Postives = 145/266 (54.51%), Query Frame = 1 
Query:  310 FKALKAKVKEKKQRRIEAESKGGITGEHGEGAGERGEGARVVSPAPCGAAELWATFCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKK---------------------KIQNRNIKAPRR---SPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCLASSSRSGVSKVG 1035
             K LK K + K+Q     +S  G           RG        A   A  +W   C V    +  +E   PW+  E++A +E FG+HT++KL G+IKA+LP+W+                      K +    K P     SP +VIVCSGARRC+EV+K L+ FRCQV+KLFAKHLK  EQ  ML++ +FP+AVGTPGRV  LAA G++ L    LL+LDA ++ KGR+VLDM G   D   LL  HVRP L S+   G  ++G
Sbjct:   90 LKELKLKTQAKRQEASAEQSSNG-----------RGSSDASALTAQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRSAPGPGALQLG 343
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.430e-28
Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCL 999
            + K R   +T LE     +++ +    +G G H L +L  +I   LP +KK    +  K   +SP  +I+CS A RCV+V+KHLT F+C+V KLFAKHLK++EQ   L   + P+AVGTP RV+ L   G+L L   T +I D EK+ K   VL++   A + M LL  +  P L
Sbjct:  102 YTKHRGGQMTSLEL-ADGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKG-KRRDKSPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK)

HSP 1 Score: 121 bits (303), Expect = 6.680e-28
Identity = 81/186 (43.55%), Postives = 106/186 (56.99%), Query Frame = 1 
Query:  451 GAAELWATFCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSK---LVGFIKASLPDWKKKIQ-----NRNIK----AP--RRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTM 966
            G A  WA +  V    +T LE     +  ENV   EG      +    LV F+KA +P WK K+Q     NR       AP  R SP V++VC+GARRCV ++K L  FRC V KLFAKH+K++EQ+ +LKK   P+AVGTP R+  LA  G L L+   L+I D  K+VK   +LD++GV  D M
Sbjct:    7 GRALFWAKYVGVMGGKLTDLE-----LRPENVP--EGAFLPVAAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLM 184
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A2D4C5F1_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN)

HSP 1 Score: 123 bits (309), Expect = 9.330e-28
Identity = 67/175 (38.29%), Postives = 103/175 (58.86%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCL 999
            + K R   +T LE     +++ +    +G G HTL  L  +++  +P WK   + + IK  + SP  +IVCS A R VEV+KHL++FRC+V KLFA+H+K +EQ+  L   F P+AVGTP R++ L    ++ L   + +ILD  K+ K   +LD+   + DTM LL  ++ P L
Sbjct:  121 YIKHRGGQLTTLEIAEG-LTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDK-SPIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A067BQF7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC)

HSP 1 Score: 122 bits (305), Expect = 1.690e-27
Identity = 66/176 (37.50%), Postives = 107/176 (60.80%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCLA 1002
            + K   D +TP E     +++ +   ++ FG HTL     F++A  P+WK   + + IK  +RSP ++IVCS A R VE+ K + +F+C V KLFAKHLKLEEQ  MLK+ F P+A+GTPGR++ L    +L L+  + ++LD   + K  ++L++   + DT+  + + + P +A
Sbjct:   92 YMKHYGDSLTPAEI-ADGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIK-DKRSPLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTIDCIRESLLPRIA 264
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A662X8K2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8K2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 7.780e-27
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:  490 ADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCL 999
            AD +    RD    +  + A  +G G H L  L  +I   +P WK++   +  K   +SP  +++CS A RCVEV+KH+ +F+C+V KLFAKH+K+ EQ   L + FFP+AVGTP RV+ L  + +L L   T +I D EK+ K   ++++   A + M LL  +  P L
Sbjct:  168 ADALNGALRDLACSAKTHFASPKGLGKHKLELLPAYIHHFMPKWKREFAGKG-KRLDKSPYFLVLCSSALRCVEVLKHVASFKCRVGKLFAKHMKVSEQGEQLSRIFFPIAVGTPARVKKLLETDALSLKHTTHVIFDMEKDKKQLTIMELKDTATEVMDLLQFYFIPQL 336
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A024UIX1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIX1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.080e-26
Identity = 67/176 (38.07%), Postives = 101/176 (57.39%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCLA 1002
            + K+  D +TP+E     +++ +   V  FG H L  L  F+++  P WK   + + IK    SP +VI+CS A R VEV K +  F C V KLF KH KL EQ  MLK+ F P+A+GTPGR++AL     L L   T +++D  ++ K  ++L++   A DT+ ++ DH+   LA
Sbjct:  105 YSKLYGDKLTPVEIANG-LTEAHFTVVPQFGKHNLDSLSRFLRSICPKWKLLFKGKGIKGDC-SPILVILCSSALRAVEVGKAIAVFHCHVAKLFGKHFKLTEQVEMLKR-FHPIAIGTPGRIKALLEMKGLSLKHTTHVVVDMHRDSKQMSILELKDTAKDTIDIIRDHMLVPLA 277
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL)

HSP 1 Score: 119 bits (298), Expect = 2.250e-26
Identity = 63/175 (36.00%), Postives = 101/175 (57.71%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCL 999
            + K R   +T LE     +++ +     G G HTL  L  +++   P WK   + +  K  + S   +++CS A R VEV+KH  +F+C+V KLFAKH+K+E+Q++ L K F P++VGTPGR++ L    +L L+  T + +D EK+ K   +L++   A + M LL  H+ P L
Sbjct:  109 YIKQRGGQMTTLELAEG-LAESHFVAPAGLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDK-STYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281
[Close]
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Match: A0A3M6VRI3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRI3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.540e-26
Identity = 67/175 (38.29%), Postives = 97/175 (55.43%), Query Frame = 1 
Query:  475 FCKVRADLVTPLERDRPWISDENVARVEGFGSHTLSKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLTAFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLDECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCL 999
            + K R   +T LE     +++ +     G G H L  L  +I   LP +K+    + ++  + SP  +I+CS A RCVE++KHLT+F+C+V KLF KHLK + Q   L   +FP+AVGTP RV+ L   G+L +     LI D EK+ K   +LD+   A + M LL  H  P L
Sbjct:   99 YMKHRGGQMTSLEL-ADGLNESHFLVPAGLGKHKLELLPSYIHHLLPTYKRDFLGKGMRRDK-SPVFLILCSSALRCVELIKHLTSFKCRVAKLFGKHLKADTQAKQLTDNYFPIAVGTPARVKKLMEMGALSMKFTKRLIFDMEKDKKQLTLLDLKDTATEMMDLLQFHFLPQL 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10672.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI26_ECTSI2.330e-9175.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSW0_9STRA1.230e-4440.98U3-containing 90S pre-ribosomal complex subunit-do... [more]
A0A6A3I4I1_9STRA3.430e-2840.00Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A7S3XUU3_HETAK6.680e-2843.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4C5F1_PYTIN9.330e-2838.29Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A067BQF7_SAPPC1.690e-2737.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A662X8K2_9STRA7.780e-2738.24Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024UIX1_9STRA1.080e-2638.07Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8K1CKQ2_PYTOL2.250e-2636.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VRI3_9STRA3.540e-2638.29Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10672contigP-canaliculata_contig10672:1188..6630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D7FI26
Preferred nameCMSS1
KEGG koko:K11858,ko:K14784
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
EggNOG OGsKOG3089@1,KOG3089@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1735
Cds size960
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4542162-UTR-P-canaliculata_contig10672:1187..18331622815637.4542162-UTR-P-canaliculata_contig10672:1187..1833Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10672 1188..1833 -
1693494179.9797447-UTR-P-canaliculata_contig10672:1187..18331693494179.9797447-UTR-P-canaliculata_contig10672:1187..1833Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10672 1188..1833 -
1622815637.5363142-UTR-P-canaliculata_contig10672:6501..66301622815637.5363142-UTR-P-canaliculata_contig10672:6501..6630Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10672 6502..6630 -
1693494180.0456002-UTR-P-canaliculata_contig10672:6501..66301693494180.0456002-UTR-P-canaliculata_contig10672:6501..6630Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10672 6502..6630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4687538-CDS-P-canaliculata_contig10672:1833..21001622815637.4687538-CDS-P-canaliculata_contig10672:1833..2100Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 1834..2100 -
1693494179.9912653-CDS-P-canaliculata_contig10672:1833..21001693494179.9912653-CDS-P-canaliculata_contig10672:1833..2100Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 1834..2100 -
1622815637.482773-CDS-P-canaliculata_contig10672:2972..30831622815637.482773-CDS-P-canaliculata_contig10672:2972..3083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 2973..3083 -
1693494180.000042-CDS-P-canaliculata_contig10672:2972..30831693494180.000042-CDS-P-canaliculata_contig10672:2972..3083Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 2973..3083 -
1622815637.499344-CDS-P-canaliculata_contig10672:3905..40121622815637.499344-CDS-P-canaliculata_contig10672:3905..4012Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 3906..4012 -
1693494180.0087776-CDS-P-canaliculata_contig10672:3905..40121693494180.0087776-CDS-P-canaliculata_contig10672:3905..4012Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 3906..4012 -
1622815637.5111883-CDS-P-canaliculata_contig10672:5387..56671622815637.5111883-CDS-P-canaliculata_contig10672:5387..5667Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 5388..5667 -
1693494180.0173671-CDS-P-canaliculata_contig10672:5387..56671693494180.0173671-CDS-P-canaliculata_contig10672:5387..5667Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 5388..5667 -
1622815637.5230694-CDS-P-canaliculata_contig10672:6306..65011622815637.5230694-CDS-P-canaliculata_contig10672:6306..6501Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 6307..6501 -
1693494180.0335877-CDS-P-canaliculata_contig10672:6306..65011693494180.0335877-CDS-P-canaliculata_contig10672:6306..6501Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10672 6307..6501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10672.896.1prot_P-canaliculata_contig10672.896.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10672 1834..6501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10672.896.1

>prot_P-canaliculata_contig10672.896.1 ID=prot_P-canaliculata_contig10672.896.1|Name=mRNA_P-canaliculata_contig10672.896.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp
MAGTKRGRPRLSAEGFEEGSSDGGSDSPGEVGGGVDEGSTLKEEMEEEAR
KRRIEKKKEKFKALKAKVKEKKQRRIEAESKGGITGEHGEGAGERGEGAR
VVSPAPCGAAELWATFCKVRADLVTPLERDRPWISDENVARVEGFGSHTL
SKLVGFIKASLPDWKKKIQNRNIKAPRRSPSVVIVCSGARRCVEVMKHLT
AFRCQVVKLFAKHLKLEEQKVMLKKGFFPLAVGTPGRVRALAASGSLRLD
ECTLLILDAEKNVKGRNVLDMDGVAADTMALLADHVRPCLASSSRSGVSK
VGGGGGEKGTGSSLRIALY*
back to top

mRNA from alignment at P-canaliculata_contig10672:1188..6630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10672.896.1 ID=mRNA_P-canaliculata_contig10672.896.1|Name=mRNA_P-canaliculata_contig10672.896.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5443bp|location=Sequence derived from alignment at P-canaliculata_contig10672:1188..6630- (Pelvetia canaliculata dioecious)
GGTGCACCCAAGGAAGTGAAGAAAAAAATAAATAATAACGGGAAAGAGGA
GGATGACGATGACGTCAATGAGGCCCGACGACGCCGAAATAGACGACACG
ACCAAGATACCCAAGATACGGCGGGGGCGATGGCTGGCACGAAACGGGGA
AGGCCTCGGCTCAGCGCCGAAGGGTTCGAGGAGGGCAGCAGCGACGGCGG
CAGCGATAGCCCAGGCGAGGTCGGCGGAGGAGTCGACGAAGGATCTACCT
TGAAGGAGGAGATGGAAGAGGAGGCCAGGAAAAGACGCATCGAGAAAAAA
AAGGAGAAGTTTAAGGCTCTAAAGGTGACTACTCCGTATTAGTATTATAC
TTTATAGTATTAATGTATATAGTATATAGTATAGTGTACAGTACTTGAAA
GGGTAAACGTCACAACAGGGTATACCCTGGTCAAAACGCGACACAGTAGG
GTACCTACTTATTTACGGCGTGAAACGGACACAGCTGATTGGTCGACGTC
CATTTTCACCCTGTCGTGCACCGACAAAAAGAGCTCTGTCGAGGAGTTCG
CCTACATGTTTTTAAATGTCGGAAAAGGAATACCGAAAAGATGGGACACA
TGCCCCATGTACAGAACGCCTCCTCCAGCTATGTCTTACGAAAATTTGGA
TTCAGTTGTCTTCTCTCCACGGCACCGACAAGAGAGCTCTGTCGAGGAGT
TCCACAGGTTTCAAATGTCGGTGAAGGATTACTAAAGGATGGCGGGACAC
CGCCCCCGTGTACAGAACGCCTCCTCCAGCTATGTACGACAGAAACCCTG
ATTCAGTTGCCTTCTCTCCACGGACTTACAGCTTACAAACAACAGCGAGT
TTTTACTCTACCGCACTCTTTTCGCCCCCCCCTCCCCCCTCTGCATAATG
CATTCGGAAAACACTTTAATTTTTACTATTATACTGTATATATGTACCGT
GCCGCTGCTGCAGGCGAAGGTGAAAGAAAAAAAGCAGCGGCGGATCGAGG
CAGAAAGTAAGGGCGGCATAACGGGCGAACACGGGGAGGGCGCGGGGGAA
AGAGGGGAAGGGGCACGAGTTGTGTCTCCGGCGCCTTGCGGGGCGGCAGA
GCTGTGGGCCACGTTCTGCAAGGTGCGGGCGGACCTGGTGACCCCGCTAG
AGAGGGACCGTCCGTGGATCTCTGACGAAAACGTCGCTCGAGTGGAAGGA
TTCGGGTCGCACACCCTGAGCAAGCTCGTGGGATTCATCAAGGGTGTGTA
CGTATATAGGATATAGTATATAGGATATAGGCTCCGGGGGGGTTGGGGGA
CGGGAGGCGGACGGGCGGGTGGCTCGTCCACAACGTGATGTTTTGTCGTT
CCCGTAATGCTTCGCAACCGTTATCAAGAAGGGATGATTGTCTCTGGACG
GATACTGCTATTATAGACTATTATACTATTAATATAACTTGCACCAGTAT
CAAATAGGTCCGGTCGTCTCCCCTACCCAGTCTGTTGTGTGAGAATTTTG
TTTTTTGTTTTTTATTCGTCTGTTTTATTTTTTAGACTTTCCGTTTCCGT
TGGACTAATCTGATCCACTTCAGGACAACCTAGCCACCGAACGATCATCT
CAACGATCATCTCACCGTTTTCCCCCTGTGGTTGGTAAGTGTTTTTTTTA
ATGTTATAAATAGTATTAATAGTTTGGTTTGTATAACGGTTGACATATTT
TATTGATAGGTTTCGGTAGATCACTCGTTGCAAGCAGACCCACCGAAATC
AATGATCAATGTGCGGACTCGTGTGCACGCAGCGATTGATTATGCGATGA
TTTTGTACGCGTTTCTACCCTTTTGGAGGTACGTATACAATGGTGTCATT
CTATCTTTATATAAACAGTGTAAACAAGTAATACGATTACTGTACATGGA
TTATTCTGGTGGAATGGATGCGTTTAGGTAGGGGCTCTTAGCCTGCACGC
GCGGCGCTTGCATACATTACATTGCCCCCCACGCAGCCTGTGTCCCCCGA
GAGGGATCATGGTTGCAACGCCCGAACACCCCCGCTGTCAGTGCTCCCCA
CTACAATGGATTTCCTCCCCTCCCTCCCCAAACATAGATGTATGCCAAAC
AAGAAGGATTCCCCGAGCTGTCTGTTGCTGTTCACGTTCTCTTGTCTCTG
CGTCATTCTGGCTTCACCATGAATTTTCACCTTGCGTTTTGTGTACTATC
AGGTATATTTTTGTATATGTTGTTGTACATGTTTTGTATATGTTTTTGTG
GTGTTCCGTGTATTTTATTTTGTGCGTTTTTGCGGTCTACACGTGTAATG
TGTGTGTGTGCGTGTATTTTTCATGAAATTGCACATACTGCGCAATCCTA
CCCTGTTAAGCTTATCGGTCTAAGCTACTCGCACCCCCCCAACCCCCCAG
TGAGGGATCCTTATTACCGAATGTTGCTACGAAAACTTCGGATGAGACGC
GTGGAAGGAGATGCACTCTATCTACTGCCCCTCTGGAACCCTCCATTGTC
CTGCTTTGTGTGTGTGTGTGAGCTTGAGTTCGAGTGTTTCTGTCAAGTGT
ACGTGTTAAGTGTATGTGTTAAGTGTATGTATGGTTTTGACGCCTGTTTC
CGTTTTTCCAAACCGCAGCTTCACTCCCAGATTGGAAGAAGAAAATCCAG
AACAGGAACATCAAGGCTCCCAGAAGAAGTCCCTCCGTGGTGATTGTTTG
CTCTGGGGCACGAAGATGCGTGGAGGTAATTTATACAAAAGATAGAGAGG
ACAGGTGCACCGCTCGGCGGTAAAACACAAACACACACACACACACACAC
ACACACACACACACAGGTCGTAGTAATTACCAATGGTACCCACTTGGGAG
GATTAATGCAAGTAGCATAGAATGACTAGGATGACGGCAGGATTGCACGG
TTACGTGCAATGTCGTAAATACACATACACACGAAAGACAAAAAGAAAAA
CGAGGCACAAAAAAAAACTCCAAGAAAGCAGGAATTTTTTGAGCTCGTCG
CCAGTTGTACGAAAATCGAGAAACCGACTCTGTAGAGCTTCCTTCTCGTT
CATTTCGATCCTTTTATGATCCTCTAGCTCTAGCTCTAGTTTTATTCCCC
AGGGTCGCTACACGTTCATCACTATAGTATGTACCTAGACCTATCAATAT
CAATATTAGTATTGATAGACCTAGAGCTAAACTGTGAGACGTGTGCTCTA
AGGGGTACACGTTTTTTCCGGGCTCATGCGCGAGGTTTGCTCTTCGTGTT
AGATTTCCTAACATATATATATAATATATATATGTTATTTTTCATATTAT
TTTTCATATTATTTTATTATATTATTTTTGTATTATTTTATTATATTATT
TTTGTATTATTTTTTATATTATTTTTATATTATTTTTATATTATTTTTTG
TTTTATTTTATTATATTATTTTTTTGAGAGATAGAAGAATCCTTGTACAA
GGTTTCGGCCATCATTGGTATCCCTCCGTTTTACTGCTATTGCTTGATGC
GTGTGTCCCCCATCCCCTACCCCCACCTTCCCCACCCCTGTACGAAGGTG
ATGAAACATCTGACGGCGTTCCGATGTCAAGTGGTGAAGCTGTTCGCCAA
GCACCTCAAGCTGGAGGAACAAAAAGTGATGCTCAAGAAGGGATTCTTCC
CGCTCGCGGTGAGAACGCCGCAACAGTAGCCTCACATCTATTAAGGTCAT
CATCGATGTATACATTATTACCTTATAAACGAGTCATTTAACGGATTTGA
TTATGTCGCTGGGGATGTTACCAAAACATCCCCTCCCGGAGATGGGACTG
TATGATAGGTAAGCTTGCCTTGAACTCAGCTCATTCTACGTAAAGTTTGG
TCATAAATGTCTCCGAGAGTGTGTTTCTCCGTGCCGTCCCCCCTACAACA
CTCTCACGCCGGTTGTTTGTGTAGAAAAGAAAAGTCCATCACAGGGATAT
ATAGTAAAAGTCGCGACGTTCGTTTTTTTTCATCGAAAATATCAGAGAGA
TCCTCGCGTTACTGCCGATCCTTCGTTCCTCGCGTTGTTGCCGTCCTTCG
TTCCTCTCGTTATTGCCGATCCTTCGTTCTTCTCCAAAAGCGCATGCAAC
AAAAAGCCATTCGACGCATTCGTATCAAAAGTAATATGTTCCCGAGCAGC
CGCAGTGTTCGCCCCCTCCCCCCCCCTCCTAAAAAAAACGCCCTCACGTT
GTTGTCGCCACTCTTGCACGGCATGAAAAAAGTGTCGTGATTGCTTCCTC
GCGCGTTAGTTGTCCGCACGGCTGTGTCAGTCTTCTCATTAAATCAAAGT
ATGTTTACCGTGCATGCTGTTATTTTTAGGCGAGTGTTGTCCGATTTGCA
CAGAACCTACCCGCGCTTTCGATTTATAGTGTACCAGGTACATTATAGAT
AATTATCTACCAGCCCCCTTTCCCTTTCCCTGCGGTTGAAGGTGGGCGCG
ATGTATTTAAATACTATATGGCGCACGAAATATCACCCAACAAATATACA
TGGCGTTCTGTTATACCTTGCCCGCGTCAGGTTGGCACCCCCGGCCGAGT
GCGGGCGCTGGCCGCGAGCGGATCCCTTCGGTTGGACGAGTGTACTCTGC
TGATCCTGGACGCGGAGAAAAACGTGAAAGGCCGGAACGTGTTAGACATG
GACGGGGTGGCCGCAGACACCATGGCGCTGTTGGCCGATCACGTCAGGCC
GTGCTTGGCCTCGTCCTCTCGATCTGGGGTTTCCAAGGTTGGAGGCGGCG
GTGGAGAGAAGGGGACCGGTTCCTCTCTAAGAATAGCATTGTACTGAAGT
TTCGCTTTTCCGTAGGTGTATGTGTGTTGAGATGTCTCGGGTCTTGAGCG
AGAAGCGACCGCTAGAGAAGAAGTGGTGTGTGACTGAAGTTTCGATTTCC
GTAGGTGTGTGTCGGAATGTCTCGAACCTTGAGCGACAAGCGAACGCTAG
GAGAGAGGTGGTCAACTATTTGCACATGCCCGAAAAGGAACACGATCAAT
GCCAGAAACGAAATACGATCAACGCCTGAAACGGAAAACGATCAATGACG
ATCGTCGAAGAATGTTGGGTGTGCCCCAGAACCGGTTCGAGTTTGTAGTA
CCTATCCCCCTGTAGCGGAACGCGGACAGCAGAGGACCTACGAGTTCAAT
GCGTGGGTAATCGAAGCGTAACTATTGATAGGCGAGACTCCCCTAATGGA
ATCAAGATACTACAGTAACATATTTGCCAACACATTTCCACTCCAGATGG
GGTACAGTGACTCTCGAAACCTACTCGTACGTGACGTGGACTCACGACGA
ACTTTCACTCAAGGGTCGTAAAAAACCTCGAGGTAAAACTCGATCTCGTT
TTCCGTCCCATCCGTTATGACAAAAGAGGTCCATTTTATATAGTAAGTAA
AATGCATGTTTCACAGAGATGTTTATATAAAAACATAATGGTT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10672:1188..6630-

>mRNA_P-canaliculata_contig10672.896.1 ID=mRNA_P-canaliculata_contig10672.896.1|Name=mRNA_P-canaliculata_contig10672.896.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig10672:1188..6630- (Pelvetia canaliculata dioecious)
ATGGCTGGCACGAAACGGGGAAGGCCTCGGCTCAGCGCCGAAGGGTTCGA
GGAGGGCAGCAGCGACGGCGGCAGCGATAGCCCAGGCGAGGTCGGCGGAG
GAGTCGACGAAGGATCTACCTTGAAGGAGGAGATGGAAGAGGAGGCCAGG
AAAAGACGCATCGAGAAAAAAAAGGAGAAGTTTAAGGCTCTAAAGATGGC
TGGCACGAAACGGGGAAGGCCTCGGCTCAGCGCCGAAGGGTTCGAGGAGG
GCAGCAGCGACGGCGGCAGCGATAGCCCAGGCGAGGTCGGCGGAGGAGTC
GACGAAGGATCTACCTTGAAGGAGGAGATGGAAGAGGAGGCCAGGAAAAG
ACGCATCGAGAAAAAAAAGGAGAAGTTTAAGGCTCTAAAGGCGAAGGTGA
AAGAAAAAAAGCAGCGGCGGATCGAGGCAGAAAGTAAGGGCGGCATAACG
GGCGAACACGGGGAGGGCGCGGGGGAAAGAGGGGAAGGGGCACGAGTTGT
GTCTCCGGCGCCTTGCGGGGCGGCAGAGCTGTGGGCCACGTTCTGCAAGG
TGCGGGCGGACCTGGTGACCCCGCTAGAGAGGGACCGTCCGTGGATCTCT
GACGAAAACGTCGCTCGAGTGGAAGGATTCGGGTCGCACACCCTGAGCAA
GCTCGTGGGATTCATCAAGGGCGAAGGTGAAAGAAAAAAAGCAGCGGCGG
ATCGAGGCAGAAAGTAAGGGCGGCATAACGGGCGAACACGGGGAGGGCGC
GGGGGAAAGAGGGGAAGGGGCACGAGTTGTGTCTCCGGCGCCTTGCGGGG
CGGCAGAGCTGTGGGCCACGTTCTGCAAGGTGCGGGCGGACCTGGTGACC
CCGCTAGAGAGGGACCGTCCGTGGATCTCTGACGAAAACGTCGCTCGAGT
GGAAGGATTCGGGTCGCACACCCTGAGCAAGCTCGTGGGATTCATCAAGG
CTTCACTCCCAGATTGGAAGAAGAAAATCCAGAACAGGAACATCAAGGCT
CCCAGAAGAAGTCCCTCCGTGGTGATTGTTTGCTCTGGGGCACGAAGATG
CGTGGAGCTTCACTCCCAGATTGGAAGAAGAAAATCCAGAACAGGAACAT
CAAGGCTCCCAGAAGAAGTCCCTCCGTGGTGATTGTTTGCTCTGGGGCAC
GAAGATGCGTGGAGGTGATGAAACATCTGACGGCGTTCCGATGTCAAGTG
GTGAAGCTGTTCGCCAAGCACCTCAAGCTGGAGGAACAAAAAGTGATGCT
CAAGAAGGGATTCTTCCCGCTCGCGGTGATGAAACATCTGACGGCGTTCC
GATGTCAAGTGGTGAAGCTGTTCGCCAAGCACCTCAAGCTGGAGGAACAA
AAAGTGATGCTCAAGAAGGGATTCTTCCCGCTCGCGGTTGGCACCCCCGG
CCGAGTGCGGGCGCTGGCCGCGAGCGGATCCCTTCGGTTGGACGAGTGTA
CTCTGCTGATCCTGGACGCGGAGAAAAACGTGAAAGGCCGGAACGTGTTA
GACATGGACGGGGTGGCCGCAGACACCATGGCGCTGTTGGCCGATCACGT
CAGGCCGTGCTTGGCCTCGTCCTCTCGATCTGGGGTTTCCAAGGTTGGAG
GCGGCGGTGGAGAGAAGGGGACCGGTTCCTCTCTAAGAATAGCATTGTAC
TGAGTTGGCACCCCCGGCCGAGTGCGGGCGCTGGCCGCGAGCGGATCCCT
TCGGTTGGACGAGTGTACTCTGCTGATCCTGGACGCGGAGAAAAACGTGA
AAGGCCGGAACGTGTTAGACATGGACGGGGTGGCCGCAGACACCATGGCG
CTGTTGGCCGATCACGTCAGGCCGTGCTTGGCCTCGTCCTCTCGATCTGG
GGTTTCCAAGGTTGGAGGCGGCGGTGGAGAGAAGGGGACCGGTTCCTCTC
TAAGAATAGCATTGTACTGA
back to top