mRNA_P-canaliculata_contig106643.887.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106643.887.1
Unique NamemRNA_P-canaliculata_contig106643.887.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI0016761723 (Hsp20 family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016761723)

HSP 1 Score: 191 bits (486), Expect = 3.230e-60
Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
            S   YPPYNVARLSED F+IELAVAGF+ D I+IETH+GVLTVSG Q+ +++ND VEYLHRGIAERGFERRFQLADHVRV  A LTNGLL I+LVREVPEAL+PQKIAI  + ++P  K+  AKSGKI+KAA
Sbjct:   33 SSAGYPPYNVARLSEDKFQIELAVAGFSTDMIDIETHDGVLTVSGNQSPSAENDTVEYLHRGIAERGFERRFQLADHVRVSSAALTNGLLTINLVREVPEALKPQKIAIGTDLIEPDGKLIDAKSGKIKKAA 164          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI0003F9DBB8 (Hsp20 family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003F9DBB8)

HSP 1 Score: 167 bits (422), Expect = 1.410e-50
Identity = 82/131 (62.60%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKA 393
            +G  YPPYNVA+LSE+++RIELAVAGF+ D++++E+HE VLT+SG +  ++DND  EYLHRGIAERGFERRFQLADHV V+GA+L NGLL++SL RE+PEAL+P+KI+IN  +L     I A  SGK + A
Sbjct:   32 AGNAYPPYNVAQLSENAYRIELAVAGFSEDELDLESHENVLTISGRKEASADNDEAEYLHRGIAERGFERRFQLADHVLVEGAELKNGLLVVSLKRELPEALKPRKISINDGKL-----IQAKPSGKAKAA 157          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A420WFA3_9PROT (Molecular chaperone IbpA n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFA3_9PROT)

HSP 1 Score: 166 bits (420), Expect = 3.020e-50
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 1
Query:   10 TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI-NGEQLQPTKKITAAKSGKIQKA 393
            +YPPYNVARL EDS+RIELAVAGF  D +EI+THE VLT+SG     + ND VEYLHRGIAERGFERRFQLADHVRV GA+L NGLL+I+L REVPEAL+P+ +AI N +Q    K IT   SGK + A
Sbjct:   35 SYPPYNVARLDEDSYRIELAVAGFDTDSLEIQTHENVLTISGSNASDTANDEVEYLHRGIAERGFERRFQLADHVRVTGANLNNGLLVITLQREVPEALKPRTVAITNSDQ----KLITPKPSGKAKAA 159          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A848V7T8_9PROT (Hsp20 family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V7T8_9PROT)

HSP 1 Score: 160 bits (405), Expect = 6.110e-48
Identity = 82/133 (61.65%), Postives = 105/133 (78.95%), Query Frame = 1
Query:    1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDND-GVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
            +G+ YPPYNVA++ +D++RIELAVAGF+ D++EIE+HE VLT++G +  ++DND    +LHRGIAERGFERRFQLADHV VDGADL NGLL+ISL RE+PEAL+P+KI I     Q   K+   KS + QKAA
Sbjct:   32 NGSAYPPYNVAQIDDDNYRIELAVAGFSDDELEIESHENVLTITGRKDPSADNDDATTWLHRGIAERGFERRFQLADHVFVDGADLKNGLLVISLKRELPEALKPRKIKIGS---QDDGKLIEQKSSRKQKAA 161          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A8J3CRK3_9PROT (Heat-shock protein IbpA n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRK3_9PROT)

HSP 1 Score: 149 bits (377), Expect = 1.440e-43
Identity = 77/131 (58.78%), Postives = 98/131 (74.81%), Query Frame = 1
Query:   10 TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI--NGEQLQPTKKITAAKSGKIQKAA 396
            +YPPYNV RLS+D++RIELAVAGFT DD+ IE+ +  LT++G     S ND  +YLHRGIAERGFERRFQLADHV ++GA L NGLL ISL RE+PEAL+P+KI I  +    +  +K+ A+K+    KAA
Sbjct:   40 SYPPYNVVRLSDDAYRIELAVAGFTEDDLNIESEQNRLTITGNHADKSANDTGDYLHRGIAERGFERRFQLADHVIIEGATLANGLLSISLKRELPEALKPRKIEIGSSASATERGEKLIASKTSGKPKAA 170          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A2G2J2C1_9PROT (Heat-shock protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J2C1_9PROT)

HSP 1 Score: 147 bits (370), Expect = 1.120e-42
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    1 SGT-TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI 327
            SGT TYPPYN++++SED + IELAVAGF+ DD+ +ETHE VL++ G +  A++N   EYLHRGIAERGFERRFQ+ADHVRV+GA L NGLL ISL RE+PEA++P+KI+I
Sbjct:   30 SGTNTYPPYNISQISEDDYLIELAVAGFSEDDLSLETHENVLSIIGTKA-ANENTTGEYLHRGIAERGFERRFQMADHVRVNGASLENGLLQISLKRELPEAMKPRKISI 138          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A520XWD1_9ACTN (Hsp20 family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XWD1_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 1.290e-41
Identity = 82/133 (61.65%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    4 GTT--YPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
            GTT  YPPYN+A+  E+ + IELAVAGF   D+ +ETHE VLTV G  T+A++ D  EYLHRGIAERGFERRFQLADHV V GA L NGLL I LVRE+PEA++P+KI I G   +  K I+   SGK +KAA
Sbjct:   30 GTTNAYPPYNIAQTGENDYLIELAVAGFAESDLSLETHENVLTVVG--TKAANEDKGEYLHRGIAERGFERRFQLADHVLVKGASLENGLLRIELVRELPEAMKPRKIEIGGSNDE--KLISQKPSGK-RKAA 157          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A2P2E9X6_9PROT (Small heat shock protein IbpA n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2P2E9X6_9PROT)

HSP 1 Score: 143 bits (361), Expect = 3.310e-41
Identity = 78/137 (56.93%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITA-----AKSGKIQKAA 396
            S T +PPYN+ +  ED++RIELAVAGF  DD+ IE  EG+LTV+G   + +  +G  +LHRGIAERGFERRFQLADHVRV GA+L +G+L + LVREVPEAL+P+KIAIN      +          AKSGK  KAA
Sbjct:   31 SATGWPPYNIEQTGEDAYRIELAVAGFGPDDLSIELKEGLLTVTG--KKVASEEGRSFLHRGIAERGFERRFQLADHVRVTGANLEHGMLSLLLVREVPEALKPRKIAINVGSASASANDAPLIEGEAKSGKSDKAA 165          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A3UH27_9PROT (16 kDa heat shock protein A n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UH27_9PROT)

HSP 1 Score: 141 bits (355), Expect = 2.050e-40
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   13 YPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKS 375
            YPPYN+ +LSE  ++IELAVAGF  DD+EIE  E VLT++G +TQ+ D +   YLHRGIAER FERRF LADHV+V  A L NGLL I L RE+PEA +P++IA+NG+    TK I+A K+
Sbjct:   35 YPPYNIEQLSEHEYQIELAVAGFGEDDLEIEVQENVLTIAGKRTQSEDAEQRNYLHRGIAERSFERRFHLADHVQVREASLENGLLRIQLEREIPEAKKPRRIAVNGKS--ETKLISADKA 153          
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI001C6345EA (Hsp20 family protein n=1 Tax=Aquisediminimonas profunda TaxID=1550733 RepID=UPI001C6345EA)

HSP 1 Score: 140 bits (354), Expect = 3.090e-40
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    4 GTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQA-SDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQL 342
            GT YPPY++ R  ED++RI LAVAGF  D+IE+   + +L VSG + +  +++D   YLHRGIA R FERRFQLADHVRV GA LTNGLL I LVREVPEA++P+KIAI G  L
Sbjct:   34 GTNYPPYDIERTGEDAYRITLAVAGFAEDEIELTAQQNLLVVSGKKAEVVANDDDHRYLHRGIANRAFERRFQLADHVRVTGAALTNGLLAIELVREVPEAMKPRKIAIGGATL 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167617233.230e-6073.48Hsp20 family protein n=1 Tax=Litorimonas cladophor... [more]
UPI0003F9DBB81.410e-5062.60Hsp20 family protein n=1 Tax=Hellea balneolensis T... [more]
A0A420WFA3_9PROT3.020e-5067.44Molecular chaperone IbpA n=1 Tax=Litorimonas taean... [more]
A0A848V7T8_9PROT6.110e-4861.65Hsp20 family protein n=1 Tax=Hellea sp. TaxID=2715... [more]
A0A8J3CRK3_9PROT1.440e-4358.78Heat-shock protein IbpA n=1 Tax=Algimonas arctica ... [more]
A0A2G2J2C1_9PROT1.120e-4266.36Heat-shock protein n=1 Tax=Robiginitomaculum sp. T... [more]
A0A520XWD1_9ACTN1.290e-4161.65Hsp20 family protein n=2 Tax=Bacteria TaxID=2 RepI... [more]
A0A2P2E9X6_9PROT3.310e-4156.93Small heat shock protein IbpA n=6 Tax=Alphaproteob... [more]
A3UH27_9PROT2.050e-4059.5016 kDa heat shock protein A n=2 Tax=unclassified O... [more]
UPI001C6345EA3.090e-4061.40Hsp20 family protein n=1 Tax=Aquisediminimonas pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106643contigP-canaliculata_contig106643:3..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score167.2
Seed ortholog evalue5.3e-39
Seed eggNOG ortholog1121948.AUAC01000006_gene566
Preferred nameibpA
KEGG koko:K04080,ko:K13993
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.Belongs to the small heat shock protein (HSP20) family
EggNOG OGs1RH2X@1224,2U96D@28211,43XKS@69657,COG0071@1,COG0071@2
COG Functional cat.O
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6473954-CDS-P-canaliculata_contig106643:2..4011622815636.6473954-CDS-P-canaliculata_contig106643:2..401Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106643 3..401 +
1693494179.5030272-CDS-P-canaliculata_contig106643:2..4011693494179.5030272-CDS-P-canaliculata_contig106643:2..401Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106643 3..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106643.887.1prot_P-canaliculata_contig106643.887.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106643 3..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106643.887.1

>prot_P-canaliculata_contig106643.887.1 ID=prot_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=133bp
SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQA
SDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPE
ALRPQKIAINGEQLQPTKKITAAKSGKIQKAA*
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mRNA from alignment at P-canaliculata_contig106643:3..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106643.887.1 ID=mRNA_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at P-canaliculata_contig106643:3..401+ (Pelvetia canaliculata dioecious)
TCCGGCACGACCTATCCTCCCTATAACGTGGCCCGCTTGTCGGAAGACAG CTTCCGCATTGAGCTGGCAGTGGCCGGATTTACGGCCGATGACATCGAAA TTGAAACGCATGAAGGCGTTTTGACCGTTTCCGGCGGGCAGACTCAGGCC TCAGACAATGACGGCGTCGAATATCTGCACCGCGGCATTGCGGAACGCGG ATTTGAACGCCGTTTCCAGTTGGCCGATCATGTGCGCGTCGATGGGGCAG ATTTGACGAACGGCCTGCTGATTATCAGCCTCGTGCGCGAAGTTCCTGAA GCTCTGCGGCCTCAGAAAATCGCAATCAACGGCGAGCAACTGCAGCCTAC GAAAAAAATAACAGCTGCCAAATCTGGCAAAATACAAAAGGCTGCCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig106643:3..401+

>mRNA_P-canaliculata_contig106643.887.1 ID=mRNA_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at P-canaliculata_contig106643:3..401+ (Pelvetia canaliculata dioecious)
TCCGGCACGACCTATCCTCCCTATAACGTGGCCCGCTTGTCGGAAGACAG
CTTCCGCATTGAGCTGGCAGTGGCCGGATTTACGGCCGATGACATCGAAA
TTGAAACGCATGAAGGCGTTTTGACCGTTTCCGGCGGGCAGACTCAGGCC
TCAGACAATGACGGCGTCGAATATCTGCACCGCGGCATTGCGGAACGCGG
ATTTGAACGCCGTTTCCAGTTGGCCGATCATGTGCGCGTCGATGGGGCAG
ATTTGACGAACGGCCTGCTGATTATCAGCCTCGTGCGCGAAGTTCCTGAA
GCTCTGCGGCCTCAGAAAATCGCAATCAACGGCGAGCAACTGCAGCCTAC
GAAAAAAATAACAGCTGCCAAATCTGGCAAAATACAAAAGGCTGCCTAAT
CCGGCACGACCTATCCTCCCTATAACGTGGCCCGCTTGTCGGAAGACAGC
TTCCGCATTGAGCTGGCAGTGGCCGGATTTACGGCCGATGACATCGAAAT
TGAAACGCATGAAGGCGTTTTGACCGTTTCCGGCGGGCAGACTCAGGCCT
CAGACAATGACGGCGTCGAATATCTGCACCGCGGCATTGCGGAACGCGGA
TTTGAACGCCGTTTCCAGTTGGCCGATCATGTGCGCGTCGATGGGGCAGA
TTTGACGAACGGCCTGCTGATTATCAGCCTCGTGCGCGAAGTTCCTGAAG
CTCTGCGGCCTCAGAAAATCGCAATCAACGGCGAGCAACTGCAGCCTACG
AAAAAAATAACAGCTGCCAAATCTGGCAAAATACAAAAGGCTGCCTAA
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