mRNA_P-canaliculata_contig106643.887.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI0016761723 (Hsp20 family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016761723) HSP 1 Score: 191 bits (486), Expect = 3.230e-60 Identity = 97/132 (73.48%), Postives = 112/132 (84.85%), Query Frame = 1
Query: 1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
S YPPYNVARLSED F+IELAVAGF+ D I+IETH+GVLTVSG Q+ +++ND VEYLHRGIAERGFERRFQLADHVRV A LTNGLL I+LVREVPEAL+PQKIAI + ++P K+ AKSGKI+KAA
Sbjct: 33 SSAGYPPYNVARLSEDKFQIELAVAGFSTDMIDIETHDGVLTVSGNQSPSAENDTVEYLHRGIAERGFERRFQLADHVRVSSAALTNGLLTINLVREVPEALKPQKIAIGTDLIEPDGKLIDAKSGKIKKAA 164
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI0003F9DBB8 (Hsp20 family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003F9DBB8) HSP 1 Score: 167 bits (422), Expect = 1.410e-50 Identity = 82/131 (62.60%), Postives = 107/131 (81.68%), Query Frame = 1
Query: 1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKA 393
+G YPPYNVA+LSE+++RIELAVAGF+ D++++E+HE VLT+SG + ++DND EYLHRGIAERGFERRFQLADHV V+GA+L NGLL++SL RE+PEAL+P+KI+IN +L I A SGK + A
Sbjct: 32 AGNAYPPYNVAQLSENAYRIELAVAGFSEDELDLESHENVLTISGRKEASADNDEAEYLHRGIAERGFERRFQLADHVLVEGAELKNGLLVVSLKRELPEALKPRKISINDGKL-----IQAKPSGKAKAA 157
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A420WFA3_9PROT (Molecular chaperone IbpA n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFA3_9PROT) HSP 1 Score: 166 bits (420), Expect = 3.020e-50 Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 1
Query: 10 TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI-NGEQLQPTKKITAAKSGKIQKA 393
+YPPYNVARL EDS+RIELAVAGF D +EI+THE VLT+SG + ND VEYLHRGIAERGFERRFQLADHVRV GA+L NGLL+I+L REVPEAL+P+ +AI N +Q K IT SGK + A
Sbjct: 35 SYPPYNVARLDEDSYRIELAVAGFDTDSLEIQTHENVLTISGSNASDTANDEVEYLHRGIAERGFERRFQLADHVRVTGANLNNGLLVITLQREVPEALKPRTVAITNSDQ----KLITPKPSGKAKAA 159
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A848V7T8_9PROT (Hsp20 family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V7T8_9PROT) HSP 1 Score: 160 bits (405), Expect = 6.110e-48 Identity = 82/133 (61.65%), Postives = 105/133 (78.95%), Query Frame = 1
Query: 1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDND-GVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
+G+ YPPYNVA++ +D++RIELAVAGF+ D++EIE+HE VLT++G + ++DND +LHRGIAERGFERRFQLADHV VDGADL NGLL+ISL RE+PEAL+P+KI I Q K+ KS + QKAA
Sbjct: 32 NGSAYPPYNVAQIDDDNYRIELAVAGFSDDELEIESHENVLTITGRKDPSADNDDATTWLHRGIAERGFERRFQLADHVFVDGADLKNGLLVISLKRELPEALKPRKIKIGS---QDDGKLIEQKSSRKQKAA 161
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A8J3CRK3_9PROT (Heat-shock protein IbpA n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CRK3_9PROT) HSP 1 Score: 149 bits (377), Expect = 1.440e-43 Identity = 77/131 (58.78%), Postives = 98/131 (74.81%), Query Frame = 1
Query: 10 TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI--NGEQLQPTKKITAAKSGKIQKAA 396
+YPPYNV RLS+D++RIELAVAGFT DD+ IE+ + LT++G S ND +YLHRGIAERGFERRFQLADHV ++GA L NGLL ISL RE+PEAL+P+KI I + + +K+ A+K+ KAA
Sbjct: 40 SYPPYNVVRLSDDAYRIELAVAGFTEDDLNIESEQNRLTITGNHADKSANDTGDYLHRGIAERGFERRFQLADHVIIEGATLANGLLSISLKRELPEALKPRKIEIGSSASATERGEKLIASKTSGKPKAA 170
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A2G2J2C1_9PROT (Heat-shock protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J2C1_9PROT) HSP 1 Score: 147 bits (370), Expect = 1.120e-42 Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 1 SGT-TYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAI 327
SGT TYPPYN++++SED + IELAVAGF+ DD+ +ETHE VL++ G + A++N EYLHRGIAERGFERRFQ+ADHVRV+GA L NGLL ISL RE+PEA++P+KI+I
Sbjct: 30 SGTNTYPPYNISQISEDDYLIELAVAGFSEDDLSLETHENVLSIIGTKA-ANENTTGEYLHRGIAERGFERRFQMADHVRVNGASLENGLLQISLKRELPEAMKPRKISI 138
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A520XWD1_9ACTN (Hsp20 family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XWD1_9ACTN) HSP 1 Score: 144 bits (363), Expect = 1.290e-41 Identity = 82/133 (61.65%), Postives = 98/133 (73.68%), Query Frame = 1
Query: 4 GTT--YPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKSGKIQKAA 396
GTT YPPYN+A+ E+ + IELAVAGF D+ +ETHE VLTV G T+A++ D EYLHRGIAERGFERRFQLADHV V GA L NGLL I LVRE+PEA++P+KI I G + K I+ SGK +KAA
Sbjct: 30 GTTNAYPPYNIAQTGENDYLIELAVAGFAESDLSLETHENVLTVVG--TKAANEDKGEYLHRGIAERGFERRFQLADHVLVKGASLENGLLRIELVRELPEAMKPRKIEIGGSNDE--KLISQKPSGK-RKAA 157
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A0A2P2E9X6_9PROT (Small heat shock protein IbpA n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2P2E9X6_9PROT) HSP 1 Score: 143 bits (361), Expect = 3.310e-41 Identity = 78/137 (56.93%), Postives = 97/137 (70.80%), Query Frame = 1
Query: 1 SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITA-----AKSGKIQKAA 396
S T +PPYN+ + ED++RIELAVAGF DD+ IE EG+LTV+G + + +G +LHRGIAERGFERRFQLADHVRV GA+L +G+L + LVREVPEAL+P+KIAIN + AKSGK KAA
Sbjct: 31 SATGWPPYNIEQTGEDAYRIELAVAGFGPDDLSIELKEGLLTVTG--KKVASEEGRSFLHRGIAERGFERRFQLADHVRVTGANLEHGMLSLLLVREVPEALKPRKIAINVGSASASANDAPLIEGEAKSGKSDKAA 165
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: A3UH27_9PROT (16 kDa heat shock protein A n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UH27_9PROT) HSP 1 Score: 141 bits (355), Expect = 2.050e-40 Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 13 YPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQASDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQLQPTKKITAAKS 375
YPPYN+ +LSE ++IELAVAGF DD+EIE E VLT++G +TQ+ D + YLHRGIAER FERRF LADHV+V A L NGLL I L RE+PEA +P++IA+NG+ TK I+A K+
Sbjct: 35 YPPYNIEQLSEHEYQIELAVAGFGEDDLEIEVQENVLTIAGKRTQSEDAEQRNYLHRGIAERSFERRFHLADHVQVREASLENGLLRIQLEREIPEAKKPRRIAVNGKS--ETKLISADKA 153
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Match: UPI001C6345EA (Hsp20 family protein n=1 Tax=Aquisediminimonas profunda TaxID=1550733 RepID=UPI001C6345EA) HSP 1 Score: 140 bits (354), Expect = 3.090e-40 Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 4 GTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQA-SDNDGVEYLHRGIAERGFERRFQLADHVRVDGADLTNGLLIISLVREVPEALRPQKIAINGEQL 342
GT YPPY++ R ED++RI LAVAGF D+IE+ + +L VSG + + +++D YLHRGIA R FERRFQLADHVRV GA LTNGLL I LVREVPEA++P+KIAI G L
Sbjct: 34 GTNYPPYDIERTGEDAYRITLAVAGFAEDEIELTAQQNLLVVSGKKAEVVANDDDHRYLHRGIANRAFERRFQLADHVRVTGAALTNGLLAIELVREVPEAMKPRKIAIGGATL 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106643.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig106643.887.1 >prot_P-canaliculata_contig106643.887.1 ID=prot_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=133bp SGTTYPPYNVARLSEDSFRIELAVAGFTADDIEIETHEGVLTVSGGQTQAback to top mRNA from alignment at P-canaliculata_contig106643:3..401+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig106643.887.1 ID=mRNA_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at P-canaliculata_contig106643:3..401+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig106643:3..401+ >mRNA_P-canaliculata_contig106643.887.1 ID=mRNA_P-canaliculata_contig106643.887.1|Name=mRNA_P-canaliculata_contig106643.887.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at P-canaliculata_contig106643:3..401+ (Pelvetia canaliculata dioecious)back to top |