mRNA_P-canaliculata_contig106624.885.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106624.885.1
Unique NamemRNA_P-canaliculata_contig106624.885.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106624.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106624contigP-canaliculata_contig106624:146..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.5446682-CDS-P-canaliculata_contig106624:145..2091622815636.5446682-CDS-P-canaliculata_contig106624:145..209Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106624 146..209 +
1693494179.4614427-CDS-P-canaliculata_contig106624:145..2091693494179.4614427-CDS-P-canaliculata_contig106624:145..209Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106624 146..209 +
1622815636.562889-CDS-P-canaliculata_contig106624:251..4901622815636.562889-CDS-P-canaliculata_contig106624:251..490Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106624 252..490 +
1693494179.477163-CDS-P-canaliculata_contig106624:251..4901693494179.477163-CDS-P-canaliculata_contig106624:251..490Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106624 252..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106624.885.1prot_P-canaliculata_contig106624.885.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106624 146..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106624.885.1

>prot_P-canaliculata_contig106624.885.1 ID=prot_P-canaliculata_contig106624.885.1|Name=mRNA_P-canaliculata_contig106624.885.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
MQLTAGGDIRINCHYCGNPGHRRNQRATRSTPFRRWKGRKRGNSKPMWCS
FHKSATHSDETCHTQQQKMGDNGSADCTSQESDYHFVFNASDPTSRSNLE
G
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mRNA from alignment at P-canaliculata_contig106624:146..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106624.885.1 ID=mRNA_P-canaliculata_contig106624.885.1|Name=mRNA_P-canaliculata_contig106624.885.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at P-canaliculata_contig106624:146..490+ (Pelvetia canaliculata dioecious)
ATGCAGTTGACCGCGGGAGGCGACATCCGCATCAACTGCCACTACTGCGG
CAACCCAGGTCACCGTCAGAAGACCTGCGTCGCTTGGACAGCGGCCCAAC
GCAAAGGACGAAATCAGCGCGCGACCCGTTCGACACCGTTCAGGCGCTGG
AAAGGAAGGAAAAGAGGAAACAGTAAGCCGATGTGGTGCTCGTTCCACAA
GTCTGCCACTCACAGCGACGAGACATGCCACACGCAACAGCAGAAAATGG
GCGACAATGGAAGCGCCGATTGCACCAGCCAGGAGTCGGACTACCACTTT
GTCTTCAATGCAAGCGATCCTACATCCAGGAGTAATCTTGAGGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig106624:146..490+

>mRNA_P-canaliculata_contig106624.885.1 ID=mRNA_P-canaliculata_contig106624.885.1|Name=mRNA_P-canaliculata_contig106624.885.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig106624:146..490+ (Pelvetia canaliculata dioecious)
ATGCAGTTGACCGCGGGAGGCGACATCCGCATCAACTGCCACTACTGCGG
CAACCCAGGTCACCATGCAGTTGACCGCGGGAGGCGACATCCGCATCAAC
TGCCACTACTGCGGCAACCCAGGTCACCGACGAAATCAGCGCGCGACCCG
TTCGACACCGTTCAGGCGCTGGAAAGGAAGGAAAAGAGGAAACAGTAAGC
CGATGTGGTGCTCGTTCCACAAGTCTGCCACTCACAGCGACGAGACATGC
CACACGCAACAGCAGAAAATGGGCGACAATGGAAGCGCCGATTGCACCAG
CCAGGAGTCGGACTACCACTTTGTCTTCAATGCAAGCGATCCTACATCCA
GGAGTAATCTTGAGGGGGACGAAATCAGCGCGCGACCCGTTCGACACCGT
TCAGGCGCTGGAAAGGAAGGAAAAGAGGAAACAGTAAGCCGATGTGGTGC
TCGTTCCACAAGTCTGCCACTCACAGCGACGAGACATGCCACACGCAACA
GCAGAAAATGGGCGACAATGGAAGCGCCGATTGCACCAGCCAGGAGTCGG
ACTACCACTTTGTCTTCAATGCAAGCGATCCTACATCCAGGAGTAATCTT
GAGGGG
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