mRNA_P-canaliculata_contig10662.884.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10662.884.1
Unique NamemRNA_P-canaliculata_contig10662.884.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10662.884.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-9
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 
Query:  246 AGACSCLAGRGL-CDY----YASASVVVRGTVLSRTDGASINDYATYTANTSTVYKSEPNVVYTQVIGFVTRGNGALCGVNLTIDEEYIFPLSRISSSFFEPE---VDDELSASLCSPPQVWSSVNETE 608
            A AC+CLA     C+Y    + + +VV RGT LS++    IN+  T+T   + VY  +  V     I FVT GN A+CGV+LTI EEY+  L       F+        +L+  LC   +VWS V + E
Sbjct:   26 ASACTCLAQYITPCEYAQGIFTTTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSGD--VDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDE 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10662.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.420e-937.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10662contigP-canaliculata_contig10662:2347..5711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size1678
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10662.884.1prot_P-canaliculata_contig10662.884.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10662 3653..5104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.429763-UTR-P-canaliculata_contig10662:2346..33701622815636.429763-UTR-P-canaliculata_contig10662:2346..3370Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 2347..3370 -
1693494179.4028072-UTR-P-canaliculata_contig10662:2346..33701693494179.4028072-UTR-P-canaliculata_contig10662:2346..3370Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 2347..3370 -
1622815636.4400785-UTR-P-canaliculata_contig10662:3624..36521622815636.4400785-UTR-P-canaliculata_contig10662:3624..3652Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 3625..3652 -
1693494179.4141424-UTR-P-canaliculata_contig10662:3624..36521693494179.4141424-UTR-P-canaliculata_contig10662:3624..3652Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 3625..3652 -
1622815636.4799864-UTR-P-canaliculata_contig10662:5104..51441622815636.4799864-UTR-P-canaliculata_contig10662:5104..5144Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 5105..5144 -
1693494179.4420443-UTR-P-canaliculata_contig10662:5104..51441693494179.4420443-UTR-P-canaliculata_contig10662:5104..5144Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 5105..5144 -
1622815636.4967208-UTR-P-canaliculata_contig10662:5569..57111622815636.4967208-UTR-P-canaliculata_contig10662:5569..5711Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 5570..5711 -
1693494179.4514418-UTR-P-canaliculata_contig10662:5569..57111693494179.4514418-UTR-P-canaliculata_contig10662:5569..5711Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10662 5570..5711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.449512-CDS-P-canaliculata_contig10662:3652..39441622815636.449512-CDS-P-canaliculata_contig10662:3652..3944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10662 3653..3944 -
1693494179.423463-CDS-P-canaliculata_contig10662:3652..39441693494179.423463-CDS-P-canaliculata_contig10662:3652..3944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10662 3653..3944 -
1622815636.465561-CDS-P-canaliculata_contig10662:4952..51041622815636.465561-CDS-P-canaliculata_contig10662:4952..5104Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10662 4953..5104 -
1693494179.4331152-CDS-P-canaliculata_contig10662:4952..51041693494179.4331152-CDS-P-canaliculata_contig10662:4952..5104Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10662 4953..5104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10662.884.1

>prot_P-canaliculata_contig10662.884.1 ID=prot_P-canaliculata_contig10662.884.1|Name=mRNA_P-canaliculata_contig10662.884.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=148bp
MAFQRLIPVAIAIVSSLLLDLAGACSCLAGRGLCDYYASASVVVRGTVLS
RTDGASINDYATYTANTSTVYKSEPNVVYTQVIGFVTRGNGALCGVNLTI
DEEYIFPLSRISSSFFEPEVDDELSASLCSPPQVWSSVNETELNGCC*
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mRNA from alignment at P-canaliculata_contig10662:2347..5711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10662.884.1 ID=mRNA_P-canaliculata_contig10662.884.1|Name=mRNA_P-canaliculata_contig10662.884.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3365bp|location=Sequence derived from alignment at P-canaliculata_contig10662:2347..5711- (Pelvetia canaliculata dioecious)
GAAACGCCTACTTGATTGATGAGTCAAACACTAGCAAAGGATACGCGACT
GCGCATCATCAGGTGACGCCTCCCCCTTCGTCAGTTTCGTCAACAACCCC
AAGCTTGATCGATTTTCAAGAAATCGTCGAGTTGCAGGAGAGGTGAGATA
AAGCCAGTCTTGAGAGCTTCGTATTCGAGAGTACAACAAAGAAGAAGTGG
ATAGAGCCCTTCGAAAAAAGTGTTGTATATAGCTCCACGACGACAGCGGT
CTAGCGGGAACACCATTTGTTTATAATCTTCGGTAACCATCCCGAGATAT
GACACATTGCTTTTTTCGGTTGTCGGCGATTCATATTATGCACCGCATTC
TGCATGCTTCGCCGTCCCTCTGGATGGTAATCTCGTACGGATGCTTTTCC
CGCCAAGAGTAAGCTATGATGGCGGAGCAAAACCGAAGACAACGATGTTT
GACATTAAGAGGGCGTTAATACACGGAAAGCGCGCCGATAATAATATACC
GTTCCTCCCCCCGCCCCCCTTCGCGTTTAAAAAAATAATATCTCTCGTTT
TCTCGGCGTCGTGCAAGTCCTTTTATTCCCAGCAACGGGTGCAACTACTG
AACGACCATGGCATTCCAAAGGCTGATCCCTGTAGCTATCGCCATCGTCT
CATCCCTGTTACTCGACTTGGCTGGCGCTTGCAGCTGCCTGGCTGGCAGG
GGGCTATGCGACTATTACGCAAGCGCCTCCGTAGTGGTGCGAGGCACCGT
ACTCTCCCGGTATGTTTTGACTCCCTGATGACTCGACGGAAATCGGCATC
GCGTACGTATGTATGTCCATTTTGTGACAAGGCTGCGTCAACCTGTTACC
TGTTGACGATTACCGCGGTTTCAACCAGTTCATTCTATGCCAATACAGTG
CCCACGATCGCTCATCCTACGTCGGCGGAGAGGGAAGTGCAAAATATACC
TGGCAAGGTGCAATGGATACAGATGGAGCTACATCGATCGCGCGCATATG
CTTTGCTATTCAAAACGACGAGTAACCAGTCTGGGGCATCTGACACACGC
CGCTTTCCCGCCCACCTATATATTTTTGTTTTTCAATTCTAGAGTTAGTT
TTTGACGATTTTCTTTCATGAGAGAAAATCACGACACGTTCATTTTGTCG
ATTCCCGCTTAACGCATATGGCCCGACATCTCCCAACTATGAGATATTTT
ATAGACCTCAGGAGAGACAAGACATAGATGGCACTGTTACAGACAGGCCC
CCGTGATATTTCGAGGAAACCGGTACGCCGTTCGCGGCGGGTAAAAGGCA
ATATGACGGCGGGTGAACCTGGTTTTGCCATGCCACGCACCCTAGGCTTG
ACAAACTTGAGCTTGTTGAGCGGCAAAATAGTTCAAGGTCCCTAAAGGAC
CTTCACACTTTGCCCAAACGATTTACTGTAGGATTCGTCACTACTCCTTT
CGTTGCCAAAAAAGTCTCCGATCCCCCTTCGCTTGACAAGCAGAGGGCGA
ATGAACTTTTGTGTTCGGTCAGGTTCACCTAGCAGAAACAGTCCCACAGG
ATCAAGACTAGAGCACATGTCTTAAGTTTATAGATGTGATATTCTTTTTG
GTTGGCGACCCCCACGATCACCCTAAACACAACCTGAAATTATGACGCCT
TTCATAAAAAGTTGTCTATCTTTCGTCAATTTCACTCCAGGAGTCGTTGC
AAGAAAAGATGCATGCTCATGATGAACTACACCTCCTTCGTTGTTCCGCG
ATCATTGTCCTCCACAGGACGGACGGTGCCAGCATCAACGACTACGCCAC
TTACACTGCCAATACCTCCACTGTGTATAAGAGTGAACCAAATGTCGTCT
ACACACAGGTGATCGGTTTCGTCACTAGAGGAAACGGCGCCCTCTGCGGT
GTGAACCTTACCATCGACGAGGAATATATTTTCCCTTTAAGCCGCATCTC
AAGCTCGTTCTTCGAGCCTGAGGTTGATGATGAGCTATCGGCGAGTTTGT
GCTCACCGCCCCAAGTTTGGTCCTCTGTCAACGAGACAGAACTAAATGGT
TGTTGCTAGGCCAGCCCAAGCAGGAGACGGGTTCCAGGTGAGAATCTCCA
ACCGGAGAATAGATAGTTAGACCAACCGTATGGTTCGGAATAATATGAAG
AATCACGCTTGGTCGTTTTCACCGTCGGCGCTGATCTGTGGCGCCTGTTT
CGGATAGGAGGACGAAAGCATCAAAACGTGTGTGATAAAGGTTCGCTGGA
AGAAACGTACCACTGGGATTCGCCTGAGATACGCTCTACGACTCAAAGCA
GCCCCCACGCGCGATTACCTCACATTCTTTTTCACATGAAGGTCGAGAAA
CAAGGGAGATCACAACGCCAGCTGGCGCTGACAACGAGTACTCCGAAATG
ATACACATGGCGTATTCGACCACATAAAATAACTACCAGGACGCCACCGT
TATCACTGCGACGACTGTGGTGGATGACAGCAGACGCGTGTAAATGCCAG
ATGATCACCTACCGCGATCGCGTGTACAACGCGTAAGTTCATGAAGGGTT
CGATGCGTTTCCAAGGTCGATAGCTAAACCGTTCTTCGTGGGCTTTCAGT
GTCACATGTTTGCGATTGCTGCTGTAGCAGCGTCATCAGTTGAAATAAGC
GAACATTTATATTCTGCATAATAACGTGTTGTCTCTGATAGCGCTAATAA
CAATTATACGGAGCGCAGAGAAGACCCCGTCAAGTGAGCAGAGTTCAGGT
GATAATACCAAAAATTGTTCCTGAAGATGAGAAGCCGAGAGGCCATTTTT
TTTCAATAACACTCCAGGATGGGATGATTATCTGCTCTGTGAGGGCTTCA
AGATTGAACAGGAGAGGTATATTCGACAAGATCGACAAGTAAAGAAGGGA
GATTGAAGTATTAGAAGAGTAGGGATGAAGGAGACATGAATGCGTCATGT
ATTTGGAGGCAATATAACAGGGATTGGCAGTTGCGCGTTATATGTTGCAG
TTTGTGGAGCCATCTTCACTTGGTTGGGAGCAGCATTCTAGTGTCGGCAA
CATTCTTTCCAGCTAACGGGATACATTTGTAGTCACGATCGATTGCACAG
GCTTGTACAAGTAGCAGTGTGGGTGTTGCGTCAACACGAAGAGGTCACGT
GACGAGCAGAAAATACATACCTTCATTCAGAGGCATCCGTACGGCTCGGA
CGTTAGATCGAGCGAGCGCTTGGTCCTTGGTGAGAGCTCGACTTCTGAAC
AGGCTGATGCAGCGAGTGTGTGTGCAAGGAATTCGAGCTGTATCATTATG
GTAGTTCCAAATCGGAATAGCATTCGATACTCTACGCGATAATGAAAAAC
CACATTTTGAGCCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10662:2347..5711-

>mRNA_P-canaliculata_contig10662.884.1 ID=mRNA_P-canaliculata_contig10662.884.1|Name=mRNA_P-canaliculata_contig10662.884.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at P-canaliculata_contig10662:2347..5711- (Pelvetia canaliculata dioecious)
ATGGCATTCCAAAGGCTGATCCCTGTAGCTATCGCCATCGTCTCATCCCT
GTTACTCGACTTGGCTGGCGCTTGCAGCTGCCTGGCTGGCAGGGGGCTAT
GCGACTATTACGCAAGCGCCTCCGTAGTGGTGCGAGGCACCGTACTCTCC
CGATGGCATTCCAAAGGCTGATCCCTGTAGCTATCGCCATCGTCTCATCC
CTGTTACTCGACTTGGCTGGCGCTTGCAGCTGCCTGGCTGGCAGGGGGCT
ATGCGACTATTACGCAAGCGCCTCCGTAGTGGTGCGAGGCACCGTACTCT
CCCGGACGGACGGTGCCAGCATCAACGACTACGCCACTTACACTGCCAAT
ACCTCCACTGTGTATAAGAGTGAACCAAATGTCGTCTACACACAGGTGAT
CGGTTTCGTCACTAGAGGAAACGGCGCCCTCTGCGGTGTGAACCTTACCA
TCGACGAGGAATATATTTTCCCTTTAAGCCGCATCTCAAGCTCGTTCTTC
GAGCCTGAGGTTGATGATGAGCTATCGGCGAGTTTGTGCTCACCGCCCCA
AGTTTGGTCCTCTGTCAACGAGACAGAACTAAATGGTTGTTGCTAGGACG
GACGGTGCCAGCATCAACGACTACGCCACTTACACTGCCAATACCTCCAC
TGTGTATAAGAGTGAACCAAATGTCGTCTACACACAGGTGATCGGTTTCG
TCACTAGAGGAAACGGCGCCCTCTGCGGTGTGAACCTTACCATCGACGAG
GAATATATTTTCCCTTTAAGCCGCATCTCAAGCTCGTTCTTCGAGCCTGA
GGTTGATGATGAGCTATCGGCGAGTTTGTGCTCACCGCCCCAAGTTTGGT
CCTCTGTCAACGAGACAGAACTAAATGGTTGTTGCTAG
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