mRNA_P-canaliculata_contig10657.875.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10657.875.1
Unique NamemRNA_P-canaliculata_contig10657.875.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10657.875.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.590e-44
Identity = 94/227 (41.41%), Postives = 120/227 (52.86%), Query Frame = 1 
Query:   10 VSQRVEQDQVLGKMEKRDG------LRVRTGRGSDMMQVARLCVDTFRGPFEWWMLPLRVYREMAFYQQVGQRCGGILRNEIQHSIVVVEDATSREIVGFLEVGLLPRPRSSEEIALRGVSKNELATDVGDVLESDGDDSSGVG-----------------------------------------TIAFEKSPDVAYLANVVVDRNQRRRGIGRLMINSAIEIVKEL 549
            VSQRVEQD+VL +     G      L VRT    DM  ++RLC+D FRGPF+W+ LP+++++E AF+ Q+  R G + RNEI+HS+V+ +D TSR +VGFLE+G+LP+P SSEE AL G S                                                                 I  EK PDVAYLANVVVDR QRRRGIGR M+NSAIEI  ++
Sbjct:   87 VSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEIGNDI 313
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BLAST of mRNA_P-canaliculata_contig10657.875.1 vs. uniprot
Match: A0A836CF34_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF34_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.160e-14
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 1 
Query:   94 DMMQVARLCVDTFRGPFEWWMLPLRVYREMAFYQQVGQRCGGILRNEIQHSIVVVEDATSREIVGFLEVGLLPRPRSSEEIALRGVSKNELATDVGDVLESDGDDSSG-----------VGTIAFEKS-----PDVAYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPL-EKRIYVTVE 585
            D+   +RLC+ TFRGP  WW     + +E++   ++ QR  GI  N ++H +VV       +IVGF+EVG+LP P    E+ +     N     V   + S                  + + A ++      PDV YLAN+VV  + R RG+G  ++  A  +V   WP  + R++V VE
Sbjct:    7 DLAAASRLCIQTFRGPVPWWQGLQGLRQELSLTYRLQQRLKGIDANTMEHKMVVAVGGDG-QIVGFMEVGMLPPPVGFYEMDVSAQDWNGATVQVQRRVPSPTRPVQNGYRLTRARAALMASAATDEGYRVRPPDVPYLANLVVATDYRGRGVGSKLVKLAQLLVARKWPSRQSRLFVLVE 186
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BLAST of mRNA_P-canaliculata_contig10657.875.1 vs. uniprot
Match: A0A7S1U4C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4C5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.750e-5
Identity = 28/94 (29.79%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:   67 LRVRTGRGSDMMQVARLCVDTFRGPFEWWMLPLRVYREMAFYQQVGQRCGGILRNEIQ------HSIVVVEDATSREIVGFLEVGLLPRPRSSE 330
            L  R+    D+  ++ LC + F GPF+W+ +  R      F   + +R     +  +       H+++V E    +E+VGF+EVGLLP P   E
Sbjct:   22 LSFRSANSDDLGTISELCAEAFGGPFQWYQIFKRTTSVTRFRAVLTRRLRATQQRPLPGEARLLHALIVAE--VGQEVVGFVEVGLLPSPERKE 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10657.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G199_ECTSI4.590e-4441.41N-acetyltransferase domain-containing protein n=2 ... [more]
A0A836CF34_9STRA1.160e-1430.94N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S1U4C5_9STRA2.750e-529.79Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10657contigP-canaliculata_contig10657:135..1192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Exons2
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5667825-CDS-P-canaliculata_contig10657:134..5451622815635.5667825-CDS-P-canaliculata_contig10657:134..545Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10657 135..545 -
1693494178.8240032-CDS-P-canaliculata_contig10657:134..5451693494178.8240032-CDS-P-canaliculata_contig10657:134..545Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10657 135..545 -
1622815635.5812464-CDS-P-canaliculata_contig10657:1015..11921622815635.5812464-CDS-P-canaliculata_contig10657:1015..1192Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10657 1016..1192 -
1693494178.8389378-CDS-P-canaliculata_contig10657:1015..11921693494178.8389378-CDS-P-canaliculata_contig10657:1015..1192Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10657 1016..1192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10657.875.1prot_P-canaliculata_contig10657.875.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10657 135..1192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10657.875.1

>prot_P-canaliculata_contig10657.875.1 ID=prot_P-canaliculata_contig10657.875.1|Name=mRNA_P-canaliculata_contig10657.875.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=196bp
KKRVSQRVEQDQVLGKMEKRDGLRVRTGRGSDMMQVARLCVDTFRGPFEW
WMLPLRVYREMAFYQQVGQRCGGILRNEIQHSIVVVEDATSREIVGFLEV
GLLPRPRSSEEIALRGVSKNELATDVGDVLESDGDDSSGVGTIAFEKSPD
VAYLANVVVDRNQRRRGIGRLMINSAIEIVKELWPLEKRIYVTVEK
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mRNA from alignment at P-canaliculata_contig10657:135..1192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10657.875.1 ID=mRNA_P-canaliculata_contig10657.875.1|Name=mRNA_P-canaliculata_contig10657.875.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-canaliculata_contig10657:135..1192- (Pelvetia canaliculata dioecious)
AAAAAGAGAGTTTCTCAGCGTGTGGAACAAGATCAAGTCCTTGGAAAGAT
GGAGAAGCGGGACGGCCTGAGAGTACGCACGGGGCGAGGGAGTGACATGA
TGCAGGTGGCACGCCTCTGCGTGGACACTTTCCGGGGGCCATTCGAGTGG
TGGATGCTACCCCTTCGAGTTTATCGGGTGGGTCTGGCGAGTTGTGTATT
AAGGGCAGCTCCAGTTGCTTTCGTTCGGGTCCGCCTGGGCTCTACACCTG
CGGTCGATCTTTCGTTCAGTACGGTCACGTTTATGGTTGAACTCGTTCCT
TGTACGGTTAGCTCTGCGTAAACAATGGCGAACGAGTCGTGCGCACTTGC
AAGTAGCCAGTACTGGAGTACAGTAGATGGTAGTTTCATCAGAGGACTTC
GATTCGGGAACTCAATAAGATATTGGCTACTACACCTGTAGCTCACCTCG
GGGAAGGCAGGCAGAGCTCGGCCGGGCTGGGTGTGCTATATCTGAGAGCT
GGACTCATCTAAACGACTTGATACCTAGAGCTCTGTATCTGTACAGCTAT
AGTAGACTTTTGTGTCAATTCGTCAGATGTGCTGCTTTCTAATTCAGTAT
GCTGCCCTCCATCCCTATCGGAACAATAATTGGATCCACGGGCACAGGAA
ATGGCTTTCTACCAACAGGTGGGGCAAAGATGCGGGGGTATCTTGCGGAA
TGAGATACAGCACAGCATTGTCGTAGTCGAAGACGCTACGTCCCGCGAGA
TCGTAGGCTTCCTAGAGGTCGGTTTGCTGCCGAGACCTAGATCTTCAGAG
GAAATTGCGCTCCGGGGGGTGAGCAAGAACGAGCTTGCGACGGACGTTGG
AGATGTTTTGGAGAGCGACGGAGATGACAGCAGCGGTGTCGGTACCATTG
CGTTCGAGAAGTCGCCTGATGTGGCGTACCTAGCTAACGTCGTGGTGGAT
CGAAATCAGAGAAGGAGGGGAATTGGTCGCCTCATGATCAACTCGGCAAT
TGAGATCGTCAAAGAGCTTTGGCCACTGGAGAAGCGCATCTACGTTACCG
TCGAAAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10657:135..1192-

>mRNA_P-canaliculata_contig10657.875.1 ID=mRNA_P-canaliculata_contig10657.875.1|Name=mRNA_P-canaliculata_contig10657.875.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at P-canaliculata_contig10657:135..1192- (Pelvetia canaliculata dioecious)
AAAAAGAGAGTTTCTCAGCGTGTGGAACAAGATCAAGTCCTTGGAAAGAT
GGAGAAGCGGGACGGCCTGAGAGTACGCACGGGGCGAGGGAGTGACATGA
TGCAGGTGGCACGCCTCTGCGTGGACACTTTCCGGGGGCCATTCGAGTGG
TGGATGCTACCCCTTCGAGTTTATCGGAAAAAGAGAGTTTCTCAGCGTGT
GGAACAAGATCAAGTCCTTGGAAAGATGGAGAAGCGGGACGGCCTGAGAG
TACGCACGGGGCGAGGGAGTGACATGATGCAGGTGGCACGCCTCTGCGTG
GACACTTTCCGGGGGCCATTCGAGTGGTGGATGCTACCCCTTCGAGTTTA
TCGGGAAATGGCTTTCTACCAACAGGTGGGGCAAAGATGCGGGGGTATCT
TGCGGAATGAGATACAGCACAGCATTGTCGTAGTCGAAGACGCTACGTCC
CGCGAGATCGTAGGCTTCCTAGAGGTCGGTTTGCTGCCGAGACCTAGATC
TTCAGAGGAAATTGCGCTCCGGGGGGTGAGCAAGAACGAGCTTGCGACGG
ACGTTGGAGATGTTTTGGAGAGCGACGGAGATGACAGCAGCGGTGTCGGT
ACCATTGCGTTCGAGAAGTCGCCTGATGTGGCGTACCTAGCTAACGTCGT
GGTGGATCGAAATCAGAGAAGGAGGGGAATTGGTCGCCTCATGATCAACT
CGGCAATTGAGATCGTCAAAGAGCTTTGGCCACTGGAGAAGCGCATCTAC
GTTACCGTCGAAAAGGAAATGGCTTTCTACCAACAGGTGGGGCAAAGATG
CGGGGGTATCTTGCGGAATGAGATACAGCACAGCATTGTCGTAGTCGAAG
ACGCTACGTCCCGCGAGATCGTAGGCTTCCTAGAGGTCGGTTTGCTGCCG
AGACCTAGATCTTCAGAGGAAATTGCGCTCCGGGGGGTGAGCAAGAACGA
GCTTGCGACGGACGTTGGAGATGTTTTGGAGAGCGACGGAGATGACAGCA
GCGGTGTCGGTACCATTGCGTTCGAGAAGTCGCCTGATGTGGCGTACCTA
GCTAACGTCGTGGTGGATCGAAATCAGAGAAGGAGGGGAATTGGTCGCCT
CATGATCAACTCGGCAATTGAGATCGTCAAAGAGCTTTGGCCACTGGAGA
AGCGCATCTACGTTACCGTCGAAAAG
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