mRNA_P-canaliculata_contig106457.862.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106457.862.1
Unique NamemRNA_P-canaliculata_contig106457.862.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig106457.862.1 vs. uniprot
Match: A0A7X0LKX7_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LKX7_9BACT)

HSP 1 Score: 209 bits (532), Expect = 9.670e-60
Identity = 103/233 (44.21%), Postives = 149/233 (63.95%), Query Frame = 1 
Query:    4 TIHVERINLVKRKSMGTVVFHGASTPEAISPDGERVASVSTGSGRRGGNRLDLWNWNGNQPEQLRSFLPFG----SEGAIRQVLFLNPDTVLTRSKSGSLSVWEVGTGRGVWEAEGVGKDADVV-LSPGRNVLALIWGQQILLIDALTGEPRGSLPEAKFEINALSFSADGKTLVAGGEGRIQGWNLEDGQAWPNIGMRSAWRPEPVAFDGGYALADGWVYDLTNGRPVWAYD 687
            TI+ E++++ + +  G V F  A+ P A+SP GER+ASV+ G      NRLD+W+W+  QP+ L SF PF     S+  I QVLF++ DTV+  ++ G +S W+  TGRG+WE  G+ + +DV+ L+PG   LA +   + +L+D  TGE   +LP A F + +LSFS DG+TLVAGG   ++GW+L +  +WP+IG+R      PVA D G   A GWVYDL  G+P+W YD
Sbjct:  285 TIYAEKVDIARGRVTGAVEFDAAALPRALSPGGERLASVANGFHIGSKNRLDVWDWSARQPKHLVSFAPFDDRQKSQADIEQVLFVDADTVVVSNRRGVVSAWDATTGRGLWEVSGLDQGSDVLALTPGGEWLAALADGRAVLLDVRTGEVGATLPGADFRVRSLSFSPDGQTLVAGGRNLVKGWDLLNRVSWPSIGLRPGESGPPVAADSGLVFAGGWVYDLKTGQPIWGYD 517
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106457.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X0LKX7_9BACT9.670e-6044.21Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106457contigP-canaliculata_contig106457:36..722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.775324-CDS-P-canaliculata_contig106457:35..7221622815634.775324-CDS-P-canaliculata_contig106457:35..722Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106457 36..722 +
1693494178.379475-CDS-P-canaliculata_contig106457:35..7221693494178.379475-CDS-P-canaliculata_contig106457:35..722Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106457 36..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106457.862.1prot_P-canaliculata_contig106457.862.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106457 36..722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106457.862.1

>prot_P-canaliculata_contig106457.862.1 ID=prot_P-canaliculata_contig106457.862.1|Name=mRNA_P-canaliculata_contig106457.862.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=229bp
ETIHVERINLVKRKSMGTVVFHGASTPEAISPDGERVASVSTGSGRRGGN
RLDLWNWNGNQPEQLRSFLPFGSEGAIRQVLFLNPDTVLTRSKSGSLSVW
EVGTGRGVWEAEGVGKDADVVLSPGRNVLALIWGQQILLIDALTGEPRGS
LPEAKFEINALSFSADGKTLVAGGEGRIQGWNLEDGQAWPNIGMRSAWRP
EPVAFDGGYALADGWVYDLTNGRPVWAYD
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mRNA from alignment at P-canaliculata_contig106457:36..722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106457.862.1 ID=mRNA_P-canaliculata_contig106457.862.1|Name=mRNA_P-canaliculata_contig106457.862.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at P-canaliculata_contig106457:36..722+ (Pelvetia canaliculata dioecious)
GAGACGATTCACGTGGAGCGGATCAATCTGGTCAAACGCAAGAGCATGGG
AACGGTCGTCTTTCACGGCGCGTCCACGCCCGAGGCGATTTCTCCCGACG
GCGAACGGGTGGCGTCGGTGTCGACCGGGTCCGGGCGGCGCGGCGGGAAT
CGGTTGGATCTATGGAATTGGAACGGCAACCAGCCCGAACAGCTTCGCAG
CTTTCTGCCGTTCGGCTCGGAGGGAGCGATTCGTCAGGTGCTTTTCCTGA
ACCCGGACACCGTGTTGACCCGCAGCAAGTCGGGCTCATTGTCGGTGTGG
GAGGTGGGTACGGGGCGTGGCGTGTGGGAGGCCGAAGGGGTGGGCAAAGA
CGCCGACGTGGTGTTGAGCCCGGGACGCAACGTGTTGGCCCTGATCTGGG
GGCAGCAGATTCTTCTGATCGATGCCCTGACGGGCGAACCGCGGGGGTCG
CTTCCGGAAGCGAAGTTTGAGATCAACGCGCTGTCTTTTTCGGCCGACGG
CAAAACACTGGTGGCGGGCGGCGAGGGACGGATCCAGGGCTGGAACCTGG
AGGACGGTCAGGCCTGGCCCAACATCGGCATGCGCAGCGCGTGGAGACCG
GAGCCGGTGGCGTTCGACGGGGGCTACGCCCTGGCGGACGGTTGGGTCTA
CGACCTGACGAACGGGCGGCCGGTCTGGGCTTACGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig106457:36..722+

>mRNA_P-canaliculata_contig106457.862.1 ID=mRNA_P-canaliculata_contig106457.862.1|Name=mRNA_P-canaliculata_contig106457.862.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at P-canaliculata_contig106457:36..722+ (Pelvetia canaliculata dioecious)
GAGACGATTCACGTGGAGCGGATCAATCTGGTCAAACGCAAGAGCATGGG
AACGGTCGTCTTTCACGGCGCGTCCACGCCCGAGGCGATTTCTCCCGACG
GCGAACGGGTGGCGTCGGTGTCGACCGGGTCCGGGCGGCGCGGCGGGAAT
CGGTTGGATCTATGGAATTGGAACGGCAACCAGCCCGAACAGCTTCGCAG
CTTTCTGCCGTTCGGCTCGGAGGGAGCGATTCGTCAGGTGCTTTTCCTGA
ACCCGGACACCGTGTTGACCCGCAGCAAGTCGGGCTCATTGTCGGTGTGG
GAGGTGGGTACGGGGCGTGGCGTGTGGGAGGCCGAAGGGGTGGGCAAAGA
CGCCGACGTGGTGTTGAGCCCGGGACGCAACGTGTTGGCCCTGATCTGGG
GGCAGCAGATTCTTCTGATCGATGCCCTGACGGGCGAACCGCGGGGGTCG
CTTCCGGAAGCGAAGTTTGAGATCAACGCGCTGTCTTTTTCGGCCGACGG
CAAAACACTGGTGGCGGGCGGCGAGGGACGGATCCAGGGCTGGAACCTGG
AGGACGGTCAGGCCTGGCCCAACATCGGCATGCGCAGCGCGTGGAGACCG
GAGCCGGTGGCGTTCGACGGGGGCTACGCCCTGGCGGACGGTTGGGTCTA
CGACCTGACGAACGGGCGGCCGGTCTGGGCTTACGACGAGACGATTCACG
TGGAGCGGATCAATCTGGTCAAACGCAAGAGCATGGGAACGGTCGTCTTT
CACGGCGCGTCCACGCCCGAGGCGATTTCTCCCGACGGCGAACGGGTGGC
GTCGGTGTCGACCGGGTCCGGGCGGCGCGGCGGGAATCGGTTGGATCTAT
GGAATTGGAACGGCAACCAGCCCGAACAGCTTCGCAGCTTTCTGCCGTTC
GGCTCGGAGGGAGCGATTCGTCAGGTGCTTTTCCTGAACCCGGACACCGT
GTTGACCCGCAGCAAGTCGGGCTCATTGTCGGTGTGGGAGGTGGGTACGG
GGCGTGGCGTGTGGGAGGCCGAAGGGGTGGGCAAAGACGCCGACGTGGTG
TTGAGCCCGGGACGCAACGTGTTGGCCCTGATCTGGGGGCAGCAGATTCT
TCTGATCGATGCCCTGACGGGCGAACCGCGGGGGTCGCTTCCGGAAGCGA
AGTTTGAGATCAACGCGCTGTCTTTTTCGGCCGACGGCAAAACACTGGTG
GCGGGCGGCGAGGGACGGATCCAGGGCTGGAACCTGGAGGACGGTCAGGC
CTGGCCCAACATCGGCATGCGCAGCGCGTGGAGACCGGAGCCGGTGGCGT
TCGACGGGGGCTACGCCCTGGCGGACGGTTGGGTCTACGACCTGACGAAC
GGGCGGCCGGTCTGGGCTTACGAC
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