mRNA_P-canaliculata_contig10629.847.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI) HSP 1 Score: 232 bits (592), Expect = 7.930e-73 Identity = 118/184 (64.13%), Postives = 148/184 (80.43%), Query Frame = 1
Query: 187 VRVVVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFG----NFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKEAD 726
VRVV+QNVTA+V+ R+ +DP+++A+KI++AEYNPKKL A VMRIREPQATGLLF SGK+++TGA G+EAA+EAAQ+FV V+E + L P+ F VQNMVAT E+D ++LELMAY RWCMYEPELFPGLIYQT RGVVA VFSSGRVVLTG +Q +LN+AL L+P+L Q ++ D
Sbjct: 31 VRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQA-RWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPD 213
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: A0A1W0E3I9_9MICR (TFIID n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E3I9_9MICR) HSP 1 Score: 161 bits (408), Expect = 5.060e-45 Identity = 81/176 (46.02%), Postives = 123/176 (69.89%), Query Frame = 1
Query: 196 VVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKEA 723
V+QNV A+V+ LD +IA +NAEYNPK+ A +MRIREP+ T L+F SGK++VTGA + +K A+Q++ +++E L F NF VQN+V++ ++ +A+ LE +AY + N +C YEPELFPGLIY+ + +V +F SG++VLTGA++ + DA E++ P+LEQ K+
Sbjct: 49 VLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKESKLASQRYSKIIEKLGFSIFFDNFKVQNIVSSCDVRFAIKLEGLAYAHSN-YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKRREDIFDAFENIYPVLEQYKKV 223
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN) HSP 1 Score: 162 bits (411), Expect = 7.630e-45 Identity = 78/174 (44.83%), Postives = 117/174 (67.24%), Query Frame = 1
Query: 199 VQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKE 720
VQNV A+V+ R+ +D T+A +NAEYNPKK A +MR+REP+ T L+F +GK+++TGA +AA+ A+KF ++ + +P FG F VQNMVAT++ + + LE + Y + ++ YEPELFPGLIY+ V +F SGR+VLTG + +G+L A E + P+L + K+
Sbjct: 50 VQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEALVYAHA-KFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.120e-43 Identity = 79/178 (44.38%), Postives = 121/178 (67.98%), Query Frame = 1
Query: 190 RVVVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKEA 723
R+V+QNV A+ + R+ +D T+A+ +NAEYNPKK A +MR+REP+ TGL+F +GK++ TGA ++ A+KF VL+ + P F FT+QNMVATA++++ + LE + Y + +++C YEPELFPG IY+ V +F SGR+V+TGA+ V +L A + + P+L Q K+
Sbjct: 61 RIVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGWNPKFTEFTIQNMVATADVNFPIRLEQLVYSH-SKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKKT 237
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: A0A1Y1S6B8_9MICR (TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S6B8_9MICR) HSP 1 Score: 157 bits (397), Expect = 1.710e-43 Identity = 76/175 (43.43%), Postives = 123/175 (70.29%), Query Frame = 1
Query: 196 VVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKE 720
V+QNV A+V+ LD +IA +NAEYNPK+ A +MRIREP+ T L+F SGK++VTGA +A++ A+Q++ ++++ L F +F +QN+V++ ++ +A+ LE +AY + N +C YEPELFPGLIY+ + +V +F SG++VLTGA+Q + +A E++ P+L Q ++
Sbjct: 40 VLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASQVASQRYAKIIQKLGFSVFFDSFKIQNIVSSCDLKFAIKLEGLAYAHSN-YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREDIFEAFENIYPVLSQYRK 213
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH) HSP 1 Score: 156 bits (394), Expect = 8.280e-43 Identity = 76/175 (43.43%), Postives = 123/175 (70.29%), Query Frame = 1
Query: 196 VVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKE 720
++QNV A+V+ LD +IA +NAEYNPKK A +MRIREP+ T L+F SGK++VTGA +A++ A+Q++ ++++ L F +FTVQN+V++ ++ + + LE +AY + N +C YEPELFPGLIY+ + +V +F SG++VLTGA++ + +A E++ P+L Q ++
Sbjct: 59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSN-YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: A0A059EJ77_9MICR (TATA-box-binding protein n=4 Tax=Tubulinosematidae TaxID=307623 RepID=A0A059EJ77_9MICR) HSP 1 Score: 154 bits (389), Expect = 1.530e-42 Identity = 74/174 (42.53%), Postives = 118/174 (67.82%), Query Frame = 1
Query: 202 QNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKEA 723
QNV A+V+ LD IA + +NAEYNPK+ A +MRIREP+ T L+F SGK++VTGA + +K AAQKF R++ L F +F +QN+V++ + +++ LE +A+ + + +C YEPELFPGLIY+ + +V +F SG++VLTGA+ + +A +++ P+L Q +++
Sbjct: 23 QNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEQMSKLAAQKFCRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAH-SSFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKLRNEIYEAFDNIYPVLTQYRKS 195
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: UPI0010FB6E15 (TATA-box-binding protein-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6E15) HSP 1 Score: 154 bits (389), Expect = 1.880e-42 Identity = 74/175 (42.29%), Postives = 119/175 (68.00%), Query Frame = 1
Query: 196 VVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKE 720
V+QNV A+V+ LD IA + +NAEYNPK+ A +MRIR+P+ T L+F SGK+++TGA E+++ AAQK+ R++ L F +F +QN+V++ + +++ LE +A+ + N +C YEPELFPGLIY+ + +V +F SG++VLTGA+ + A E++ P+L Q ++
Sbjct: 28 VLQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTSLIFASGKMVITGAKSEESSRIAAQKYARIIHKLGFNTRFADFKIQNIVSSCDTKFSIRLEGLAFAHSN-YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTQYRK 201
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: L2GNX2_VITCO (TATA-box-binding protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GNX2_VITCO) HSP 1 Score: 153 bits (387), Expect = 3.220e-42 Identity = 73/176 (41.48%), Postives = 121/176 (68.75%), Query Frame = 1
Query: 196 VVQNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKEA 723
V+QNV A+V+ LD +IA + +NAEYNPK+ A +MRIR+P+ T L+F SGK++VTGA +A+K A+Q++ +++ L F +F +QN+V++ ++ + + LE +AY + N +C YEPELFPGLIY+ + +V +F SG++VLTGA+ + +A +++ P+L Q ++
Sbjct: 23 VLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSN-FCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRKT 197
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Match: Q9U7A4_ANTLO (Transcription initiation factor TFIID n=1 Tax=Antonospora locustae TaxID=278021 RepID=Q9U7A4_ANTLO) HSP 1 Score: 155 bits (392), Expect = 3.390e-42 Identity = 75/173 (43.35%), Postives = 117/173 (67.63%), Query Frame = 1
Query: 202 QNVTASVSTRLVLDPATIASKIKNAEYNPKKLQACVMRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGNFTVQNMVATAEMDYAVNLELMAYLNINRWCMYEPELFPGLIYQTPRRGVVAQVFSSGRVVLTGARQVGYLNDALEHLIPLLEQVKE 720
QNV A+V+ LD IA + +NAEYNPK+ A +MRIR+P+ T L+F SGK++VTGA + +K AAQKF R++ L F +F +QN+V++ + +++ LE +A+ + N +C YEPELFPGLIY+ + +V +F SG++VLTGA+ + +A +++ P+L Q K+
Sbjct: 87 QNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSN-FCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEIYEAFDNIYPVLTQYKK 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10629.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10629.847.1 >prot_P-canaliculata_contig10629.847.1 ID=prot_P-canaliculata_contig10629.847.1|Name=mRNA_P-canaliculata_contig10629.847.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp MRIREPQATGLLFQSGKLMVTGAPGIEAAKEAAQKFVRVLETLSLKPSFGback to top mRNA from alignment at P-canaliculata_contig10629:7410..10146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10629.847.1 ID=mRNA_P-canaliculata_contig10629.847.1|Name=mRNA_P-canaliculata_contig10629.847.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2737bp|location=Sequence derived from alignment at P-canaliculata_contig10629:7410..10146- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10629:7410..10146- >mRNA_P-canaliculata_contig10629.847.1 ID=mRNA_P-canaliculata_contig10629.847.1|Name=mRNA_P-canaliculata_contig10629.847.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig10629:7410..10146- (Pelvetia canaliculata dioecious)back to top |