mRNA_P-canaliculata_contig106190.828.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106190.828.1
Unique NamemRNA_P-canaliculata_contig106190.828.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig106190.828.1 vs. uniprot
Match: UPI0019037380 (Brp/Blh family beta-carotene 15,15'-dioxygenase n=1 Tax=Thiocystis violacea TaxID=13725 RepID=UPI0019037380)

HSP 1 Score: 60.5 bits (145), Expect = 5.550e-7
Identity = 58/182 (31.87%), Postives = 90/182 (49.45%), Query Frame = 1 
Query:   70 VGMFLLGIPHGAVEYIFDKKQNARAWQKPSLYY-CLTYILLGLVIFALYLIAPVAALCAFLILSALHFGAEETH------------IKSLGFFVILGSLIFYPALTLGIF-DLITNRSAFSAVP----IWTAQAVGLASL--GAVAYESFLKKREY---TRTALIIAVFIILPPIQAVAIYF 546
            V + LLGIPHGA++++  K   AR  +   L+   + Y+LLG ++ A ++  P   L AFL  + LH+G E+T             +   G   I+  L F+PA T  +F  LI   +A +       +W    +  ASL  G  A  + L +RE+      A I A+F++ PP+ A A+YF
Sbjct:   52 VSVALLGIPHGALDFMHMKALAARLGRAELLWVGFVLYLLLGGLVIAAWIAFPAPMLAAFLAATVLHWGVEDTRAPLAWRSGYIAEVLLRGAMPIVLPLAFHPAQTAWLFGQLIPTEAALALTQGVGALWPLLLLLAASLLGGLFARRASLPRREWWTLIELATIAALFVVTPPLVAFAVYF 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106190.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00190373805.550e-731.87Brp/Blh family beta-carotene 15,15'-dioxygenase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106190contigP-canaliculata_contig106190:121..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size780
Cds size780
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.9758413-CDS-P-canaliculata_contig106190:120..9001622815631.9758413-CDS-P-canaliculata_contig106190:120..900Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106190 121..900 -
1693494176.8406975-CDS-P-canaliculata_contig106190:120..9001693494176.8406975-CDS-P-canaliculata_contig106190:120..900Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106190 121..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106190.828.1prot_P-canaliculata_contig106190.828.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106190 121..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106190.828.1

>prot_P-canaliculata_contig106190.828.1 ID=prot_P-canaliculata_contig106190.828.1|Name=mRNA_P-canaliculata_contig106190.828.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=260bp
LALIIAVQWVLSSTAPEISLWLAVGMFLLGIPHGAVEYIFDKKQNARAWQ
KPSLYYCLTYILLGLVIFALYLIAPVAALCAFLILSALHFGAEETHIKSL
GFFVILGSLIFYPALTLGIFDLITNRSAFSAVPIWTAQAVGLASLGAVAY
ESFLKKREYTRTALIIAVFIILPPIQAVAIYFLFFHAYESFISQTENSRT
SVSALETHPVIIIGLALAGASGLILAAYLGYISLAVCAAAAVGFTVPHLL
NALRYASLS*
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mRNA from alignment at P-canaliculata_contig106190:121..900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106190.828.1 ID=mRNA_P-canaliculata_contig106190.828.1|Name=mRNA_P-canaliculata_contig106190.828.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at P-canaliculata_contig106190:121..900- (Pelvetia canaliculata dioecious)
TTGGCGCTCATTATCGCCGTCCAATGGGTGCTTTCATCGACAGCACCGGA
GATTTCGCTTTGGTTAGCGGTCGGGATGTTCCTATTGGGCATCCCCCACG
GCGCGGTCGAGTACATCTTTGACAAAAAACAAAATGCGAGAGCCTGGCAA
AAACCGAGCCTCTATTATTGTTTGACCTATATTCTATTGGGGCTCGTCAT
TTTCGCGCTTTATCTCATCGCGCCTGTCGCAGCTTTGTGTGCCTTTCTCA
TTTTATCCGCGCTGCATTTCGGCGCGGAGGAAACCCACATCAAATCTCTT
GGATTTTTTGTGATCTTGGGGTCTCTCATTTTCTATCCGGCCCTGACTTT
GGGTATTTTCGATTTAATTACAAATCGGTCTGCCTTCTCCGCCGTGCCGA
TATGGACAGCTCAAGCTGTTGGCCTCGCCAGTCTCGGCGCGGTGGCGTAC
GAAAGTTTTTTGAAAAAGCGCGAATACACCCGCACAGCTTTGATCATTGC
CGTCTTTATTATCCTGCCGCCTATACAGGCGGTCGCCATTTATTTTCTGT
TTTTCCACGCCTATGAAAGTTTTATATCGCAAACTGAAAACAGCAGGACC
TCAGTTTCAGCGCTGGAAACTCATCCCGTCATCATCATCGGACTGGCGCT
TGCGGGCGCTTCGGGCCTCATCCTGGCGGCATATCTCGGATACATTTCGC
TAGCCGTTTGCGCAGCGGCGGCAGTCGGCTTCACGGTCCCACATCTTTTA
AACGCCTTGAGATACGCTTCCTTATCCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig106190:121..900-

>mRNA_P-canaliculata_contig106190.828.1 ID=mRNA_P-canaliculata_contig106190.828.1|Name=mRNA_P-canaliculata_contig106190.828.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at P-canaliculata_contig106190:121..900- (Pelvetia canaliculata dioecious)
TTGGCGCTCATTATCGCCGTCCAATGGGTGCTTTCATCGACAGCACCGGA
GATTTCGCTTTGGTTAGCGGTCGGGATGTTCCTATTGGGCATCCCCCACG
GCGCGGTCGAGTACATCTTTGACAAAAAACAAAATGCGAGAGCCTGGCAA
AAACCGAGCCTCTATTATTGTTTGACCTATATTCTATTGGGGCTCGTCAT
TTTCGCGCTTTATCTCATCGCGCCTGTCGCAGCTTTGTGTGCCTTTCTCA
TTTTATCCGCGCTGCATTTCGGCGCGGAGGAAACCCACATCAAATCTCTT
GGATTTTTTGTGATCTTGGGGTCTCTCATTTTCTATCCGGCCCTGACTTT
GGGTATTTTCGATTTAATTACAAATCGGTCTGCCTTCTCCGCCGTGCCGA
TATGGACAGCTCAAGCTGTTGGCCTCGCCAGTCTCGGCGCGGTGGCGTAC
GAAAGTTTTTTGAAAAAGCGCGAATACACCCGCACAGCTTTGATCATTGC
CGTCTTTATTATCCTGCCGCCTATACAGGCGGTCGCCATTTATTTTCTGT
TTTTCCACGCCTATGAAAGTTTTATATCGCAAACTGAAAACAGCAGGACC
TCAGTTTCAGCGCTGGAAACTCATCCCGTCATCATCATCGGACTGGCGCT
TGCGGGCGCTTCGGGCCTCATCCTGGCGGCATATCTCGGATACATTTCGC
TAGCCGTTTGCGCAGCGGCGGCAGTCGGCTTCACGGTCCCACATCTTTTA
AACGCCTTGAGATACGCTTCCTTATCCTGATTGGCGCTCATTATCGCCGT
CCAATGGGTGCTTTCATCGACAGCACCGGAGATTTCGCTTTGGTTAGCGG
TCGGGATGTTCCTATTGGGCATCCCCCACGGCGCGGTCGAGTACATCTTT
GACAAAAAACAAAATGCGAGAGCCTGGCAAAAACCGAGCCTCTATTATTG
TTTGACCTATATTCTATTGGGGCTCGTCATTTTCGCGCTTTATCTCATCG
CGCCTGTCGCAGCTTTGTGTGCCTTTCTCATTTTATCCGCGCTGCATTTC
GGCGCGGAGGAAACCCACATCAAATCTCTTGGATTTTTTGTGATCTTGGG
GTCTCTCATTTTCTATCCGGCCCTGACTTTGGGTATTTTCGATTTAATTA
CAAATCGGTCTGCCTTCTCCGCCGTGCCGATATGGACAGCTCAAGCTGTT
GGCCTCGCCAGTCTCGGCGCGGTGGCGTACGAAAGTTTTTTGAAAAAGCG
CGAATACACCCGCACAGCTTTGATCATTGCCGTCTTTATTATCCTGCCGC
CTATACAGGCGGTCGCCATTTATTTTCTGTTTTTCCACGCCTATGAAAGT
TTTATATCGCAAACTGAAAACAGCAGGACCTCAGTTTCAGCGCTGGAAAC
TCATCCCGTCATCATCATCGGACTGGCGCTTGCGGGCGCTTCGGGCCTCA
TCCTGGCGGCATATCTCGGATACATTTCGCTAGCCGTTTGCGCAGCGGCG
GCAGTCGGCTTCACGGTCCCACATCTTTTAAACGCCTTGAGATACGCTTC
CTTATCCTGA
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