mRNA_P-canaliculata_contig10612.818.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 229 bits (583), Expect = 7.210e-71 Identity = 126/169 (74.56%), Postives = 134/169 (79.29%), Query Frame = 1
Query: 1 QGEDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDSFE 507
Q E + WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV+EWER R XXXXXXXXXXXXX KLLRFTGRPQD SPKAW+ + LLGY PPFDRHDWVVKR DGTEARYVIDFYAGK PPGS +PVAMHLDVRPA+DS++
Sbjct: 219 QKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAP-----------KLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 376
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.440e-65 Identity = 132/195 (67.69%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 QGEDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXD-----------------------VEI---KLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDSFE 507
Q E + WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV+EWER A XXXXXXXXXXXXXXXXXXXX + V + KL RFTGRPQD SPKAW+ + L GY PPFDRHDWVVKR DGTEARYVIDFYAGK PPGS +PVAMHLDVRPA+DS++
Sbjct: 205 QKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 399
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.370e-48 Identity = 86/163 (52.76%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 19 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDSFE 507
WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE R + KL F GRP D+SPKAW T +LGY PPFDRHDWVV+ G E RYVIDFYAGK P E PVA+HLDVRPA+DS +
Sbjct: 49 WVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGG--------------------------------DPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSAD 176
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.040e-41 Identity = 81/163 (49.69%), Postives = 96/163 (58.90%), Query Frame = 1
Query: 19 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKA-WINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDSF 504
WVYPSEQQY+NA+K KG+ D+ LAIHNAVNE+GW V EWE G S KL RF GRPQD+SPKA W+ ++ GY+ PFDRHDWVV+R DG+E RYVIDFY G+ PV+MHLDVRPA+DS
Sbjct: 127 WVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWE----GGLGSTPP---------------------------KLKRFMGRPQDLSPKAAWL--WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSM 256
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A4S929_OSTLU (Holocytochrome c-type synthase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S929_OSTLU) HSP 1 Score: 144 bits (364), Expect = 2.530e-41 Identity = 81/164 (49.39%), Postives = 92/164 (56.10%), Query Frame = 1
Query: 7 EDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMD 498
E+ TW YPSE+ +YNA+KRKG+K SA DM + IHNAVNEK W V WER KLL+F GRP+D SPKA + LGY PFDRHDW+V R GTE RYVIDFY VP G PVAMHLDVRPA+D
Sbjct: 1 EEATWRYPSEEMFYNAMKRKGWKPSANDMEHVVKIHNAVNEKAWAHVMAWERRHCERCPDP-----------------------------KLLKFRGRPKDYSPKAQFLNF-LGYKLPFDRHDWIVDRC-GTEVRYVIDFY-NAVPYGGNAPVAMHLDVRPALD 132
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A7S0C270_9STRA (Holocytochrome c-type synthase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C270_9STRA) HSP 1 Score: 146 bits (369), Expect = 8.860e-41 Identity = 79/170 (46.47%), Postives = 97/170 (57.06%), Query Frame = 1
Query: 10 DKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPG-------SEIPVAMHLDVRPAMD 498
D WVYPSEQQ+YNA+KRKGY+ A M + ++IHNAVNE+ W +V++WE A+ +L+RF GRP D SP+A N Y+L PPFDRHDWVV R DG E RYVIDFY G G S+ PV+MHLDVRPA+D
Sbjct: 42 DPAWVYPSEQQFYNAMKRKGYQPDAQSMHTVVSIHNAVNERTWSLVQKWE-------ATLHDCPNP-----------------------RLVRFLGRPDDRSPRALFNEYVLMKSPPFDRHDWVVDRGDGVERRYVIDFYDGNPQTGGFTGSQKSKKPVSMHLDVRPALD 181
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A1E1GHU4_9CRYP (Holocytochrome c-type synthase n=1 Tax=Roombia sp. NY0200 TaxID=1263497 RepID=A0A1E1GHU4_9CRYP) HSP 1 Score: 147 bits (370), Expect = 1.970e-40 Identity = 74/170 (43.53%), Postives = 96/170 (56.47%), Query Frame = 1
Query: 7 EDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEI--PVAMHLDVRPAMDSFEV 510
E+ WVYPSEQ ++NA+K+KG+ S DMP +AIHN NEK W + WE+ G KL+RF GRP D+SPKAW + ++GY PFDRHDW+V+RT+ + RYVIDFY G P + P+AMHLDVRPA+DS +
Sbjct: 122 EEAKWVYPSEQMFFNAMKKKGWSPSEKDMPLVVAIHNTTNEKAWNEILRWEQFALTGSKGAPTDAASSTPPVPPP---------------KLVRFQGRPNDLSPKAWFLS-MIGYSRPFDRHDWLVERTNKEQVRYVIDFYEGGTVPSTSRRQPIAMHLDVRPAVDSLSL 275
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A2V0PGM4_9CHLO (Holocytochrome c-type synthase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGM4_9CHLO) HSP 1 Score: 145 bits (366), Expect = 1.070e-39 Identity = 81/167 (48.50%), Postives = 95/167 (56.89%), Query Frame = 1
Query: 4 GEDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDSF 504
G D W+YPSEQQ+YNA+ RKG++ DMP+ +AIHNAVNE+ W V WE A A+ KLLRF GRP D SPKA + + LGY PFDRHDWVV R G E RYVIDFY+G PG +MHLDVRPA+DSF
Sbjct: 146 GGDAVWMYPSEQQFYNAMARKGWQPQEQDMPTVVAIHNAVNERAWRHVLSWEALHACDCAAP-----------------------------KLLRFRGRPADYSPKARLLNF-LGYKLPFDRHDWVVDRC-GEEVRYVIDFYSGAPAPGGT--ASMHLDVRPALDSF 279
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A3M7KZQ7_AUXPR (Holocytochrome c-type synthase n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZQ7_AUXPR) HSP 1 Score: 140 bits (354), Expect = 2.290e-38 Identity = 78/161 (48.45%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 19 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEARYVIDFYAGKVPPGSEIPVAMHLDVRPAMDS 501
W YPSEQ +YNA++RKG+ S DM + +AIHNAVNE+ W V+ WE AAG + LLRF GRP D+SPKA + LGY PFDRHDWVV+R G E RYVIDFY G P ++P AMHLDVRPA+DS
Sbjct: 110 WTYPSEQMFYNAMRRKGWTPSEEDMTAVVAIHNAVNERAWREVRAWEA--AAGCPAPT-----------------------------LLRFRGRPADVSPKARLLN-ALGYRLPFDRHDWVVERGGGREVRYVIDFYNGA--PSPDMPTAMHLDVRPALDS 236
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Match: A0A7S1UN93_9STRA (Holocytochrome c-type synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN93_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.960e-38 Identity = 80/187 (42.78%), Postives = 99/187 (52.94%), Query Frame = 1
Query: 19 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKEWERERAAGKASXXXXXXXXXXXXXXXXXXXXXXXXXXDVEIKLLRFTGRPQDMSPKAWINTYLLGYHPPFDRHDWVVKRTDGTEAR-YVIDFYAGK-------------------------VPPGSEI-PVAMHLDVRPAMD 498
WVYPSEQQ+YNA+KRKG++A + MP + IHNAVNE+GW V +WE +L+RF GRP+D+SPKA++NTY+LGY PPFDRHDW V R DG+E R YVIDFY G V +E P AM+LDVRPA+D
Sbjct: 113 WVYPSEQQFYNAMKRKGWEADESTMPLVVRIHNAVNERGWSEVCKWEALHGCPNP-------------------------------RLVRFLGRPKDISPKAFLNTYILGYRPPFDRHDWYVDRGDGSEPRRYVIDFYNGNDGSNTSKSLLSTLLQRVSGENDSTGVASAAEYRPPAMYLDVRPALD 268 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10612.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10612.818.1 >prot_P-canaliculata_contig10612.818.1 ID=prot_P-canaliculata_contig10612.818.1|Name=mRNA_P-canaliculata_contig10612.818.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp QGEDKTWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKback to top mRNA from alignment at P-canaliculata_contig10612:10137..11250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10612.818.1 ID=mRNA_P-canaliculata_contig10612.818.1|Name=mRNA_P-canaliculata_contig10612.818.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-canaliculata_contig10612:10137..11250- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10612:10137..11250- >mRNA_P-canaliculata_contig10612.818.1 ID=mRNA_P-canaliculata_contig10612.818.1|Name=mRNA_P-canaliculata_contig10612.818.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig10612:10137..11250- (Pelvetia canaliculata dioecious)back to top |