mRNA_P-canaliculata_contig106117.817.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106117.817.1
Unique NamemRNA_P-canaliculata_contig106117.817.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: UPI001675EE30 (RdgB/HAM1 family non-canonical purine NTP pyrophosphatase n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001675EE30)

HSP 1 Score: 380 bits (977), Expect = 6.560e-133
Identity = 185/211 (87.68%), Postives = 193/211 (91.47%), Query Frame = 1
Query:    1 MTKHTLTPGTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            MTKH L P TKIVVASHN GKVREIRDLL PFGL TVSAAELNLPEP+ETETTF+GNA+LKA AAA+ASG PALSDDSGLAVDAL GEPGIYAARWAELP IE ETYGQRRDFDMAMWHVND+LGD  NR ARFICALCLAWP GET VYEGTVEGEMIWPPRG+KGFGYDPMFQQLG+T TFAEIDPAAKHAVSHRADAFAKFL DQFP+
Sbjct:    1 MTKHALKPSTKIVVASHNAGKVREIRDLLAPFGLITVSAAELNLPEPEETETTFAGNARLKAVAAADASGLPALSDDSGLAVDALNGEPGIYAARWAELPRIEAETYGQRRDFDMAMWHVNDKLGDTKNRNARFICALCLAWPKGETFVYEGTVEGEMIWPPRGEKGFGYDPMFQQLGQTKTFAEIDPAAKHAVSHRADAFAKFLADQFPD 211          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: UPI0003F6AB52 (RdgB/HAM1 family non-canonical purine NTP pyrophosphatase n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003F6AB52)

HSP 1 Score: 318 bits (816), Expect = 1.510e-108
Identity = 156/202 (77.23%), Postives = 174/202 (86.14%), Query Frame = 1
Query:   28 TKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            +KIVVASHNEGKVREIRDLL PFG+ETVSA EL L EPDETETTF+GNA+LKA AAANASG PALSDDSGLAVDAL G+PGIYAARWAE P  E    G  RDFDMAMWHVND +G+  +RRARFICALCLA+P+GE   YEG VEG++IWPPRGDKGFGYDP+F+ +G++ TFAEIDPA KHA SHRADAFAKFL DQFP+
Sbjct:    5 SKIVVASHNEGKVREIRDLLAPFGIETVSAGELGLAEPDETETTFAGNAELKARAAANASGLPALSDDSGLAVDALNGDPGIYAARWAEKPSCE----GGGRDFDMAMWHVNDGIGENPDRRARFICALCLAYPNGEAYTYEGKVEGDIIWPPRGDKGFGYDPIFRAIGDSKTFAEIDPAEKHAKSHRADAFAKFLKDQFPD 202          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A420WL17_9PROT (dITP/XTP pyrophosphatase n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WL17_9PROT)

HSP 1 Score: 294 bits (753), Expect = 8.330e-99
Identity = 144/202 (71.29%), Postives = 167/202 (82.67%), Query Frame = 1
Query:   28 TKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            TKIVVASHN+GK+REI  LL+PFGL  +SAA+L LPEP+ETE TF+GNA+LKA A+A A+G PALSDDSGL V AL G PGIYAARWAELP +E    G  RDF+MAMWHVNDQLGD  +R ARFICALCLA P+GE  +YEGTVEG++ WPP+G+KGFGYDP+F   G+T TFAEIDPA K A SHRADAFAKF+ DQFP+
Sbjct:   13 TKIVVASHNQGKIREISALLKPFGLSVLSAADLELPEPEETEKTFAGNARLKARASAQATGLPALSDDSGLDVTALDGRPGIYAARWAELPRVE----GGGRDFNMAMWHVNDQLGDSLDRTARFICALCLAMPNGENRIYEGTVEGKISWPPKGNKGFGYDPIFIAEGDTKTFAEIDPAIKQAKSHRADAFAKFMADQFPQ 210          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A848V202_9PROT (dITP/XTP pyrophosphatase n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V202_9PROT)

HSP 1 Score: 285 bits (729), Expect = 2.750e-95
Identity = 140/202 (69.31%), Postives = 165/202 (81.68%), Query Frame = 1
Query:   28 TKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNR-RARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFP 630
            TK +VASHN+GKVREIR+LL P G+ETVSAAEL+LPEP+ETET+F+GNA+LKA  AA  SG P+LSDDSGLAVDALGG+PGIYAARWA +P +E    G  RDFDMAMW V+ Q+ D      ARFICALCLA+PDGE  +YEG VEG ++WPP+G KGFGYDP+FQ +G+  TFA+IDPA KHA SHRADAFAKFL  +FP
Sbjct:    5 TKFLVASHNQGKVREIRELLAPLGVETVSAAELDLPEPEETETSFAGNARLKAQVAAELSGLPSLSDDSGLAVDALGGDPGIYAARWAAIPKVE----GGGRDFDMAMWRVHSQMQDKGGPDTARFICALCLAFPDGEYEIYEGKVEGRIVWPPQGVKGFGYDPIFQAIGDEKTFAQIDPAEKHAKSHRADAFAKFLKARFP 202          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A8J3CSQ7_9PROT (dITP/XTP pyrophosphatase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CSQ7_9PROT)

HSP 1 Score: 279 bits (713), Expect = 1.290e-92
Identity = 138/207 (66.67%), Postives = 160/207 (77.29%), Query Frame = 1
Query:   10 HTLTPGTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFP 630
            H L  G  +VVASHNEGKVREIR LL PFGL  +SAAEL+LPEPDETETT++GNA+LKA AAA ASG PALSDDSG+ + AL G+PGIYAARWAE            RDF  AM  V  +LGD ++R ARF+CALCLA+PDG ++VYEG  +G ++WPPRGD+GFGYDP+F   G+ LTFAEIDP AKH  SHRADAFAKFL DQFP
Sbjct:   12 HRLMSGQTLVVASHNEGKVREIRALLAPFGLTAISAAELDLPEPDETETTYAGNARLKAVAAATASGHPALSDDSGIDITALDGQPGIYAARWAE-------DVDGNRDFMRAMERVQRELGDSEDRSARFVCALCLAFPDGSSTVYEGDCKGNIVWPPRGDRGFGYDPIFVMTGDGLTFAEIDPQAKHDKSHRADAFAKFLADQFP 211          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A520XLP7_9ACTN (dITP/XTP pyrophosphatase n=2 Tax=Bacteria TaxID=2 RepID=A0A520XLP7_9ACTN)

HSP 1 Score: 264 bits (675), Expect = 4.220e-87
Identity = 137/202 (67.82%), Postives = 159/202 (78.71%), Query Frame = 1
Query:   31 KIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDN-RRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            KIVVASHNEGKVREIRDLL+PFG+ETVS AEL+LPEPDET  TF+ NA+LKA AAA+ASG  ALSDDSGLA+DAL G PGIYAARWAELP          R+FD AM  V +++  +   + ARFICAL LA+P G+   +EG VEGE++WPPRGDKGFGYDP+FQ LG+ LTFAEIDP  KHA SHRADAFAKF+   FP+
Sbjct:    7 KIVVASHNEGKVREIRDLLQPFGVETVSVAELDLPEPDETGVTFAENAELKAKAAADASGLIALSDDSGLAIDALDGAPGIYAARWAELP-------EGGRNFDYAMARVFEEMQKVGGPKTARFICALSLAFPHGDIHTFEGKVEGEIVWPPRGDKGFGYDPIFQALGDQLTFAEIDPDEKHAKSHRADAFAKFIKTWFPD 201          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A0F2RD07_9PROT (dITP/XTP pyrophosphatase n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2RD07_9PROT)

HSP 1 Score: 257 bits (656), Expect = 3.380e-84
Identity = 126/203 (62.07%), Postives = 155/203 (76.35%), Query Frame = 1
Query:   25 GTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            G K+VVASHN GKVREIRDLL PFG++ VSA EL+LPEP+ET TTF+ NA+LKA AAA ASG P+LSDDSGLAV+AL G+PGIY+ARWA          G  +DF  AM  + ++L  MD+RRA F+CAL LAWPDG    +EG V+G ++WPPRGD+GFGYDP+FQ  G T+TFAE+DP AKHA+SHRA AFA+ +   F +
Sbjct:   11 GGKLVVASHNAGKVREIRDLLAPFGVDVVSAGELDLPEPEETGTTFAANAELKALAAAQASGLPSLSDDSGLAVEALLGQPGIYSARWA----------GPTKDFGAAMQRIENELIGMDDRRAHFVCALTLAWPDGHMETFEGRVDGTLVWPPRGDRGFGYDPIFQPEGHTVTFAEMDPQAKHAMSHRARAFAQLVAACFKD 203          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A2W4TIJ2_9PROT (Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TIJ2_9PROT)

HSP 1 Score: 256 bits (653), Expect = 8.450e-84
Identity = 127/205 (61.95%), Postives = 152/205 (74.15%), Query Frame = 1
Query:   16 LTPGTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQLGDMD-----NRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFL 615
            L  G K+VVASHN GK+REI DL+ P+GLE VSAA+L LPEP+ETETTF+GNA+LKA  AA ASG PALSDDSGL V+ALGG+PG+Y+ARWA          G  +DF++AM  + D+L           RA F CALCLAWPDGE  ++EG V G ++WPPRGD+GFGYDPMF   GETLTF E+DPA KHA+SHRA AFA F+
Sbjct:    4 LEKGAKLVVASHNPGKIREIADLVEPYGLEVVSAADLALPEPEETETTFAGNARLKAVTAARASGLPALSDDSGLEVEALGGQPGVYSARWA----------GPEKDFNVAMKRLADELSAAGAWKEPGPRANFTCALCLAWPDGEAHIFEGKVFGRLVWPPRGDRGFGYDPMFLPDGETLTFGEMDPADKHAISHRARAFALFV 198          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A1I1M6Q3_9RHOB (dITP/XTP pyrophosphatase n=1 Tax=Tropicimonas isoalkanivorans TaxID=441112 RepID=A0A1I1M6Q3_9RHOB)

HSP 1 Score: 256 bits (653), Expect = 1.000e-83
Identity = 125/206 (60.68%), Postives = 153/206 (74.27%), Query Frame = 1
Query:   25 GTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAM---WHVNDQLGDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFPE 633
            G ++V+ASHN GKVREI +LL PFG+  +S  EL+LPEP+ETE TF GNA++KA AAA ASG PALSDDSGL+VDALGG PG+Y+A WAE P        Q RDFDMAM   W   ++L   + R ARF C LCLAWPDG   V++G VEG ++WP RG KGFG+DPMF+ LGET+TF E+DP  KH++SHRADAFAKF+   F +
Sbjct:    6 GERLVIASHNAGKVREIGELLAPFGVAVISVGELDLPEPEETEDTFVGNARIKAHAAAQASGLPALSDDSGLSVDALGGAPGVYSAYWAETP--------QGRDFDMAMEKVWTECEKLDAPEPRTARFHCVLCLAWPDGHDEVFDGIVEGRLVWPKRGSKGFGFDPMFEPLGETVTFGEMDPERKHSMSHRADAFAKFVAGCFAD 203          
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Match: A0A2G2GF93_9PROT (dITP/XTP pyrophosphatase n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GF93_9PROT)

HSP 1 Score: 255 bits (651), Expect = 2.630e-83
Identity = 132/206 (64.08%), Postives = 158/206 (76.70%), Query Frame = 1
Query:   22 PGTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDETETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELPIIEKETYGQRRDFDMAMWHVNDQL---GDMDNRRARFICALCLAWPDGETSVYEGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADAFAKFLTDQFP 630
            P T++VVASHNEGKVREIR+LL+PFG+ T SA EL+LPEP+ET  TF+ NA+LKA AAA+ SG  AL+DDSGLAVDAL GEPGIY+ARWAELP       G  RDFD AM  V + +   G +D   ARFICAL LA+P+ +   YEG VEG ++WPPRGDKGFGYDP+FQ +G++ TFAEI+P AKH  SHRADAFAKF+   FP
Sbjct:    4 PITRLVVASHNEGKVREIRELLKPFGVTTFSARELDLPEPEETGLTFAANAELKAQAAADTSGMIALADDSGLAVDALNGEPGIYSARWAELPD------GSGRDFDYAMARVYEDMKNAGTVDT--ARFICALSLAFPNADVHTYEGKVEGRIVWPPRGDKGFGYDPIFQAIGDSQTFAEIEPQAKHDKSHRADAFAKFIKIWFP 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106117.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001675EE306.560e-13387.68RdgB/HAM1 family non-canonical purine NTP pyrophos... [more]
UPI0003F6AB521.510e-10877.23RdgB/HAM1 family non-canonical purine NTP pyrophos... [more]
A0A420WL17_9PROT8.330e-9971.29dITP/XTP pyrophosphatase n=1 Tax=Litorimonas taean... [more]
A0A848V202_9PROT2.750e-9569.31dITP/XTP pyrophosphatase n=1 Tax=Hellea sp. TaxID=... [more]
A0A8J3CSQ7_9PROT1.290e-9266.67dITP/XTP pyrophosphatase n=1 Tax=Algimonas arctica... [more]
A0A520XLP7_9ACTN4.220e-8767.82dITP/XTP pyrophosphatase n=2 Tax=Bacteria TaxID=2 ... [more]
A0A0F2RD07_9PROT3.380e-8462.07dITP/XTP pyrophosphatase n=1 Tax=Rhodospirillaceae... [more]
A0A2W4TIJ2_9PROT8.450e-8461.95Non-canonical purine NTP pyrophosphatase, RdgB/HAM... [more]
A0A1I1M6Q3_9RHOB1.000e-8360.68dITP/XTP pyrophosphatase n=1 Tax=Tropicimonas isoa... [more]
A0A2G2GF93_9PROT2.630e-8364.08dITP/XTP pyrophosphatase n=1 Tax=Robiginitomaculum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106117contigP-canaliculata_contig106117:11..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score317.8
Seed ortholog evalue3.9e-84
Seed eggNOG ortholog1121948.AUAC01000006_gene592
Preferred namerdgB
KEGG rclassRC00002,RC00302
KEGG koko:K01776,ko:K02428
KEGG ReactionR00260,R00426,R00720,R01855,R02100,R02720,R03531
KEGG Pathwayko00230,ko00471,ko01100,map00230,map00471,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
EggNOG OGs1MUK5@1224,2TV4B@28211,43XEJ@69657,COG0127@1,COG0127@2
EC3.6.1.66,5.1.1.3
COG Functional cat.F
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size633
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.1358643-CDS-P-canaliculata_contig106117:10..6431622815631.1358643-CDS-P-canaliculata_contig106117:10..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106117 11..643 -
1693494176.3986542-CDS-P-canaliculata_contig106117:10..6431693494176.3986542-CDS-P-canaliculata_contig106117:10..643Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106117 11..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106117.817.1prot_P-canaliculata_contig106117.817.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106117 11..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106117.817.1

>prot_P-canaliculata_contig106117.817.1 ID=prot_P-canaliculata_contig106117.817.1|Name=mRNA_P-canaliculata_contig106117.817.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=211bp
MTKHTLTPGTKIVVASHNEGKVREIRDLLRPFGLETVSAAELNLPEPDET
ETTFSGNAKLKAAAAANASGFPALSDDSGLAVDALGGEPGIYAARWAELP
IIEKETYGQRRDFDMAMWHVNDQLGDMDNRRARFICALCLAWPDGETSVY
EGTVEGEMIWPPRGDKGFGYDPMFQQLGETLTFAEIDPAAKHAVSHRADA
FAKFLTDQFPE
back to top

mRNA from alignment at P-canaliculata_contig106117:11..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106117.817.1 ID=mRNA_P-canaliculata_contig106117.817.1|Name=mRNA_P-canaliculata_contig106117.817.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at P-canaliculata_contig106117:11..643- (Pelvetia canaliculata dioecious)
ATGACAAAACACACACTCACCCCCGGAACAAAGATCGTGGTCGCCTCTCA CAATGAAGGCAAGGTCCGCGAAATCCGCGACCTGTTGCGGCCCTTTGGAT TGGAGACCGTGAGCGCGGCCGAATTGAACTTGCCCGAACCGGACGAGACG GAAACCACATTTTCGGGCAATGCAAAGCTAAAAGCTGCCGCTGCTGCGAA CGCATCGGGATTTCCTGCACTGTCCGATGATAGCGGTTTAGCGGTCGATG CGCTGGGCGGCGAGCCAGGGATTTATGCGGCGCGCTGGGCGGAGTTGCCA ATCATCGAAAAAGAGACTTATGGGCAGCGCCGTGATTTTGATATGGCCAT GTGGCATGTGAATGATCAACTGGGCGATATGGACAACCGCCGCGCGCGGT TTATCTGCGCGCTTTGTTTGGCGTGGCCGGACGGCGAAACCTCCGTCTAT GAGGGCACGGTCGAGGGCGAAATGATTTGGCCGCCGCGCGGAGACAAAGG CTTTGGCTATGATCCAATGTTTCAGCAACTCGGCGAGACGCTCACATTTG CAGAAATTGACCCGGCGGCAAAACACGCCGTCAGCCACCGCGCGGATGCT TTTGCCAAGTTTTTAACGGATCAGTTTCCGGAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig106117:11..643-

>mRNA_P-canaliculata_contig106117.817.1 ID=mRNA_P-canaliculata_contig106117.817.1|Name=mRNA_P-canaliculata_contig106117.817.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at P-canaliculata_contig106117:11..643- (Pelvetia canaliculata dioecious)
ATGACAAAACACACACTCACCCCCGGAACAAAGATCGTGGTCGCCTCTCA
CAATGAAGGCAAGGTCCGCGAAATCCGCGACCTGTTGCGGCCCTTTGGAT
TGGAGACCGTGAGCGCGGCCGAATTGAACTTGCCCGAACCGGACGAGACG
GAAACCACATTTTCGGGCAATGCAAAGCTAAAAGCTGCCGCTGCTGCGAA
CGCATCGGGATTTCCTGCACTGTCCGATGATAGCGGTTTAGCGGTCGATG
CGCTGGGCGGCGAGCCAGGGATTTATGCGGCGCGCTGGGCGGAGTTGCCA
ATCATCGAAAAAGAGACTTATGGGCAGCGCCGTGATTTTGATATGGCCAT
GTGGCATGTGAATGATCAACTGGGCGATATGGACAACCGCCGCGCGCGGT
TTATCTGCGCGCTTTGTTTGGCGTGGCCGGACGGCGAAACCTCCGTCTAT
GAGGGCACGGTCGAGGGCGAAATGATTTGGCCGCCGCGCGGAGACAAAGG
CTTTGGCTATGATCCAATGTTTCAGCAACTCGGCGAGACGCTCACATTTG
CAGAAATTGACCCGGCGGCAAAACACGCCGTCAGCCACCGCGCGGATGCT
TTTGCCAAGTTTTTAACGGATCAGTTTCCGGAAATGACAAAACACACACT
CACCCCCGGAACAAAGATCGTGGTCGCCTCTCACAATGAAGGCAAGGTCC
GCGAAATCCGCGACCTGTTGCGGCCCTTTGGATTGGAGACCGTGAGCGCG
GCCGAATTGAACTTGCCCGAACCGGACGAGACGGAAACCACATTTTCGGG
CAATGCAAAGCTAAAAGCTGCCGCTGCTGCGAACGCATCGGGATTTCCTG
CACTGTCCGATGATAGCGGTTTAGCGGTCGATGCGCTGGGCGGCGAGCCA
GGGATTTATGCGGCGCGCTGGGCGGAGTTGCCAATCATCGAAAAAGAGAC
TTATGGGCAGCGCCGTGATTTTGATATGGCCATGTGGCATGTGAATGATC
AACTGGGCGATATGGACAACCGCCGCGCGCGGTTTATCTGCGCGCTTTGT
TTGGCGTGGCCGGACGGCGAAACCTCCGTCTATGAGGGCACGGTCGAGGG
CGAAATGATTTGGCCGCCGCGCGGAGACAAAGGCTTTGGCTATGATCCAA
TGTTTCAGCAACTCGGCGAGACGCTCACATTTGCAGAAATTGACCCGGCG
GCAAAACACGCCGTCAGCCACCGCGCGGATGCTTTTGCCAAGTTTTTAAC
GGATCAGTTTCCGGAA
back to top