mRNA_P-canaliculata_contig105912.798.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105912.798.1
Unique NamemRNA_P-canaliculata_contig105912.798.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig105912.798.1 vs. uniprot
Match: UPI001F5CD0FE (choice-of-anchor D domain-containing protein n=1 Tax=Halochromatium roseum TaxID=391920 RepID=UPI001F5CD0FE)

HSP 1 Score: 87.4 bits (215), Expect = 2.200e-15
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  502 TIVNQGTVTANGGQFQSITPDVFDNQGLVEVVGGGTLQVNSA-NLTNLVGTTLSGGFWRA---GESSTLDLRSGLITENSAEILLDGTGSAF---QSSSSRTSLEDSLVNNTASGTLRVLGGRNYDATATGAFANAGTIELGGGS 915
            T+ N GT+ A+     +I    F + G V+   G T+   S+ N  N     L+ G W A   G  +T++L    ITEN+AEI+L G GS     +S+SS T+LEDSL NN A GTLRVL  R+Y+ +   A  NAG IELGGG+
Sbjct:  584 TLANSGTIQADSSDTLNINGGTFSSTGTVQASDGSTVAFGSSVNQANNQSGVLTDGRWVAESTGNGATIELSGDAITENAAEIVLSGAGSVVGVRESASSFTALEDSLTNNQADGTLRVLDNRDYNNS--NALTNAGVIELGGGT 726
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BLAST of mRNA_P-canaliculata_contig105912.798.1 vs. uniprot
Match: A0A0S7YJP6_9BACT (Peptidase S1 domain-containing protein (Fragment) n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A0S7YJP6_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.990e-6
Identity = 49/131 (37.40%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:  496 AGTIVNQGTVTANGGQFQSITPDVFDNQGLVEVVGGGTLQVNSANLTNLVGTTLSGGFWRAGESSTLDLRSGL-ITENSAEILLDGTGSAFQSSSSRTSLEDSLVNNTASGTLRVLGGRNYDATATGAFAN 885
            A  I+N+GT   + G   +     FDN+G VE   G  L      +T LVGTTL+GG W A   STL L++G  +T N   ++L+G GS F          +SL +N   G   +LGG  +D T  G F N
Sbjct:  668 ADPIINEGTFLKSAGAGTTTIDIPFDNRGTVEARSGTLLFAEP--VTQLVGTTLTGGTWIARTGSTLQLQAGSNVTVNQGNVVLEGLGSVFAK-------VNSLADN--QGGFTILGG--HDFTTAGPFIN 785
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105912.798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001F5CD0FE2.200e-1542.76choice-of-anchor D domain-containing protein n=1 T... [more]
A0A0S7YJP6_9BACT2.990e-637.40Peptidase S1 domain-containing protein (Fragment) ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105912contigP-canaliculata_contig105912:2..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog1248916.ANFY01000007_gene2562
EggNOG free text desc.domain, Protein
EggNOG OGsCOG2931@1,COG2931@2,COG3210@1,COG3210@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.6793525-CDS-P-canaliculata_contig105912:1..9161622815629.6793525-CDS-P-canaliculata_contig105912:1..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105912 2..916 +
1693494175.5835297-CDS-P-canaliculata_contig105912:1..9161693494175.5835297-CDS-P-canaliculata_contig105912:1..916Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105912 2..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105912.798.1prot_P-canaliculata_contig105912.798.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105912 2..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105912.798.1

>prot_P-canaliculata_contig105912.798.1 ID=prot_P-canaliculata_contig105912.798.1|Name=mRNA_P-canaliculata_contig105912.798.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=305bp
LRGTFATAGITDIDNTGDGVVNLRGTLVNTDATFDLSMTSLGNFQVNGGT
IRGGTIDQTGGGQLAFLTSNNILDGVAVTGDLNLGNSASIRLQNGASFTG
DANLTASSNRLSTEFDATINNTINLTGSNSTFGVSGTSTLTLGTDAQVNL
SGNNASLRSDVVNGGAGTIVNQGTVTANGGQFQSITPDVFDNQGLVEVVG
GGTLQVNSANLTNLVGTTLSGGFWRAGESSTLDLRSGLITENSAEILLDG
TGSAFQSSSSRTSLEDSLVNNTASGTLRVLGGRNYDATATGAFANAGTIE
LGGGS
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mRNA from alignment at P-canaliculata_contig105912:2..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105912.798.1 ID=mRNA_P-canaliculata_contig105912.798.1|Name=mRNA_P-canaliculata_contig105912.798.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at P-canaliculata_contig105912:2..916+ (Pelvetia canaliculata dioecious)
CTACGAGGAACATTCGCGACAGCAGGTATTACTGACATCGACAACACTGG
TGACGGCGTAGTTAACCTTCGCGGAACCCTCGTAAACACGGATGCAACAT
TCGATTTAAGTATGACTTCGCTAGGAAATTTCCAAGTCAACGGTGGAACA
ATTCGCGGCGGCACAATCGACCAGACAGGCGGCGGACAATTGGCATTTTT
AACTAGCAACAATATTCTGGACGGGGTGGCAGTTACTGGAGACTTGAACT
TAGGCAATTCTGCAAGCATACGGCTGCAAAATGGTGCAAGTTTCACTGGC
GATGCCAACTTGACTGCTTCTAGCAATCGCTTGTCGACTGAATTTGATGC
GACGATTAACAACACGATCAACCTGACTGGCAGCAATTCGACTTTTGGCG
TCAGTGGTACGTCAACCTTGACGCTGGGCACCGACGCTCAAGTTAACCTG
AGTGGCAATAACGCAAGTCTCCGCAGCGATGTGGTGAACGGTGGAGCTGG
AACTATTGTCAATCAGGGAACGGTTACCGCAAACGGTGGTCAGTTCCAGT
CTATTACTCCTGATGTGTTCGACAATCAAGGATTAGTTGAAGTCGTTGGC
GGCGGCACGCTGCAAGTTAACTCAGCCAATCTTACAAATCTCGTTGGAAC
GACGTTGTCGGGAGGCTTTTGGAGGGCCGGCGAGTCTTCAACCCTAGACT
TGCGAAGCGGACTTATTACCGAAAATTCGGCTGAAATTTTACTTGACGGA
ACCGGTTCTGCTTTTCAATCTTCCAGTTCACGAACATCGCTGGAAGACTC
GCTGGTGAATAACACTGCCAGTGGAACCCTACGAGTGCTCGGTGGACGAA
ACTACGATGCGACTGCTACGGGAGCATTTGCGAACGCGGGAACCATTGAA
CTGGGCGGCGGAAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig105912:2..916+

>mRNA_P-canaliculata_contig105912.798.1 ID=mRNA_P-canaliculata_contig105912.798.1|Name=mRNA_P-canaliculata_contig105912.798.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at P-canaliculata_contig105912:2..916+ (Pelvetia canaliculata dioecious)
CTACGAGGAACATTCGCGACAGCAGGTATTACTGACATCGACAACACTGG
TGACGGCGTAGTTAACCTTCGCGGAACCCTCGTAAACACGGATGCAACAT
TCGATTTAAGTATGACTTCGCTAGGAAATTTCCAAGTCAACGGTGGAACA
ATTCGCGGCGGCACAATCGACCAGACAGGCGGCGGACAATTGGCATTTTT
AACTAGCAACAATATTCTGGACGGGGTGGCAGTTACTGGAGACTTGAACT
TAGGCAATTCTGCAAGCATACGGCTGCAAAATGGTGCAAGTTTCACTGGC
GATGCCAACTTGACTGCTTCTAGCAATCGCTTGTCGACTGAATTTGATGC
GACGATTAACAACACGATCAACCTGACTGGCAGCAATTCGACTTTTGGCG
TCAGTGGTACGTCAACCTTGACGCTGGGCACCGACGCTCAAGTTAACCTG
AGTGGCAATAACGCAAGTCTCCGCAGCGATGTGGTGAACGGTGGAGCTGG
AACTATTGTCAATCAGGGAACGGTTACCGCAAACGGTGGTCAGTTCCAGT
CTATTACTCCTGATGTGTTCGACAATCAAGGATTAGTTGAAGTCGTTGGC
GGCGGCACGCTGCAAGTTAACTCAGCCAATCTTACAAATCTCGTTGGAAC
GACGTTGTCGGGAGGCTTTTGGAGGGCCGGCGAGTCTTCAACCCTAGACT
TGCGAAGCGGACTTATTACCGAAAATTCGGCTGAAATTTTACTTGACGGA
ACCGGTTCTGCTTTTCAATCTTCCAGTTCACGAACATCGCTGGAAGACTC
GCTGGTGAATAACACTGCCAGTGGAACCCTACGAGTGCTCGGTGGACGAA
ACTACGATGCGACTGCTACGGGAGCATTTGCGAACGCGGGAACCATTGAA
CTGGGCGGCGGAAGCCTACGAGGAACATTCGCGACAGCAGGTATTACTGA
CATCGACAACACTGGTGACGGCGTAGTTAACCTTCGCGGAACCCTCGTAA
ACACGGATGCAACATTCGATTTAAGTATGACTTCGCTAGGAAATTTCCAA
GTCAACGGTGGAACAATTCGCGGCGGCACAATCGACCAGACAGGCGGCGG
ACAATTGGCATTTTTAACTAGCAACAATATTCTGGACGGGGTGGCAGTTA
CTGGAGACTTGAACTTAGGCAATTCTGCAAGCATACGGCTGCAAAATGGT
GCAAGTTTCACTGGCGATGCCAACTTGACTGCTTCTAGCAATCGCTTGTC
GACTGAATTTGATGCGACGATTAACAACACGATCAACCTGACTGGCAGCA
ATTCGACTTTTGGCGTCAGTGGTACGTCAACCTTGACGCTGGGCACCGAC
GCTCAAGTTAACCTGAGTGGCAATAACGCAAGTCTCCGCAGCGATGTGGT
GAACGGTGGAGCTGGAACTATTGTCAATCAGGGAACGGTTACCGCAAACG
GTGGTCAGTTCCAGTCTATTACTCCTGATGTGTTCGACAATCAAGGATTA
GTTGAAGTCGTTGGCGGCGGCACGCTGCAAGTTAACTCAGCCAATCTTAC
AAATCTCGTTGGAACGACGTTGTCGGGAGGCTTTTGGAGGGCCGGCGAGT
CTTCAACCCTAGACTTGCGAAGCGGACTTATTACCGAAAATTCGGCTGAA
ATTTTACTTGACGGAACCGGTTCTGCTTTTCAATCTTCCAGTTCACGAAC
ATCGCTGGAAGACTCGCTGGTGAATAACACTGCCAGTGGAACCCTACGAG
TGCTCGGTGGACGAAACTACGATGCGACTGCTACGGGAGCATTTGCGAAC
GCGGGAACCATTGAACTGGGCGGCGGAAGC
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