mRNA_P-canaliculata_contig105584.761.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105584.761.1
Unique NamemRNA_P-canaliculata_contig105584.761.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.230e-60
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVTSK 321
            +KAGLQFPVGRVGRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK   K
Sbjct:   18 AKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.050e-59
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 309
            +KAGLQFPVGRVGRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   63 AKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.790e-58
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 309
            SKAGLQFPV R+GR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   18 SKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 8.890e-58
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 309
            SKAGLQFPV R+GR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   69 SKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: A0A7S3K2Q9_9STRA (Histone H2A n=4 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Q9_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.140e-57
Identity = 93/105 (88.57%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVTSK 321
            +KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK  SK
Sbjct:   24 AKAGLQFPVGRIGRFLKQGKYATRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGSVTIASGGVLPNIHAVLLPKKSKSK 128
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.530e-57
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 309
            +KAGLQFPVGR+GRF+K GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:   18 AKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.950e-57
Identity = 90/104 (86.54%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVTS 318
            SKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK  S
Sbjct:   21 SKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.960e-57
Identity = 90/105 (85.71%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVTSK 321
            +KAGLQFPVGRVGRFLK G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK  SK
Sbjct:   21 AKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: A0A804IFP5_MUSAM (Histone H2A n=4 Tax=Zingiberales TaxID=4618 RepID=A0A804IFP5_MUSAM)

HSP 1 Score: 180 bits (456), Expect = 1.720e-56
Identity = 90/104 (86.54%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVTS 318
            SKAGLQFPVGR+ RFLKAGKY++RVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK RI+PRH+QLAVRNDEEL+KLLGEVTIASGGV+PNIH +LLPKK  S
Sbjct:   21 SKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGEVTIASGGVMPNIHNLLLPKKAGS 124
[Close]
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Match: H2A_CHLRE (Histone H2A n=45 Tax=Chlamydomonadales TaxID=3042 RepID=H2A_CHLRE)

HSP 1 Score: 179 bits (454), Expect = 2.860e-56
Identity = 88/101 (87.13%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    7 SKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 309
            +KAGLQFPVGR+ R+LK GKY++R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RI+PRH+QLA+RNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   19 AKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKK 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105584.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI1.230e-6092.38Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI4.050e-5995.05Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG79_9PHAE1.790e-5893.07Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FVQ5_ECTSI8.890e-5893.07Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7S3K2Q9_9STRA1.140e-5788.57Histone H2A n=4 Tax=Aureoumbra lagunensis TaxID=44... [more]
D8LLP0_ECTSI2.530e-5788.12Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A836CG77_9STRA4.950e-5786.54Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZLE9_9STRA4.960e-5785.71Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A804IFP5_MUSAM1.720e-5686.54Histone H2A n=4 Tax=Zingiberales TaxID=4618 RepID=... [more]
H2A_CHLRE2.860e-5687.13Histone H2A n=45 Tax=Chlamydomonadales TaxID=3042 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105584contigP-canaliculata_contig105584:375..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.3e-47
Seed eggNOG ortholog2880.D7G4I2
Preferred nameH2AFY
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.Histone H2A
EggNOG OGsCOG5262@1,KOG1756@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHistone H2A variant
Ec32 orthologEc-21_006160.1
Exons1
Model size324
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.9694335-CDS-P-canaliculata_contig105584:374..6981622815626.9694335-CDS-P-canaliculata_contig105584:374..698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105584 375..698 -
1693494174.0545933-CDS-P-canaliculata_contig105584:374..6981693494174.0545933-CDS-P-canaliculata_contig105584:374..698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105584 375..698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105584.761.1prot_P-canaliculata_contig105584.761.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105584 375..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105584.761.1

>prot_P-canaliculata_contig105584.761.1 ID=prot_P-canaliculata_contig105584.761.1|Name=mRNA_P-canaliculata_contig105584.761.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp
MLSKAGLQFPVGRVGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELA
GNAARDNKKARIIPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLL
PKKVTSK*
back to top

mRNA from alignment at P-canaliculata_contig105584:375..698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105584.761.1 ID=mRNA_P-canaliculata_contig105584.761.1|Name=mRNA_P-canaliculata_contig105584.761.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig105584:375..698- (Pelvetia canaliculata dioecious)
ATGCTCTCCAAGGCTGGCCTGCAGTTCCCCGTGGGTCGTGTCGGCCGCTT
TCTCAAGGCCGGTAAATACTCCCAACGCGTGGGTGCGGGTGCCCCCGTGT
ACCTGGCGGCCGTGCTAGAATATCTGACCGCTGAGGTGCTGGAACTGGCG
GGGAACGCGGCCCGCGATAACAAGAAGGCCCGCATCATCCCTCGCCACGT
TCAGCTGGCCGTCCGTAACGACGAGGAGCTCAACAAATTACTCGGAGAGG
TGACCATCGCTTCGGGCGGTGTGCTACCCAACATTCACGCCGTACTCCTT
CCTAAGAAGGTGACGAGTAAGTGA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig105584:375..698-

>mRNA_P-canaliculata_contig105584.761.1 ID=mRNA_P-canaliculata_contig105584.761.1|Name=mRNA_P-canaliculata_contig105584.761.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig105584:375..698- (Pelvetia canaliculata dioecious)
ATGCTCTCCAAGGCTGGCCTGCAGTTCCCCGTGGGTCGTGTCGGCCGCTT
TCTCAAGGCCGGTAAATACTCCCAACGCGTGGGTGCGGGTGCCCCCGTGT
ACCTGGCGGCCGTGCTAGAATATCTGACCGCTGAGGTGCTGGAACTGGCG
GGGAACGCGGCCCGCGATAACAAGAAGGCCCGCATCATCCCTCGCCACGT
TCAGCTGGCCGTCCGTAACGACGAGGAGCTCAACAAATTACTCGGAGAGG
TGACCATCGCTTCGGGCGGTGTGCTACCCAACATTCACGCCGTACTCCTT
CCTAAGAAGGTGACGAGTAAGTGAATGCTCTCCAAGGCTGGCCTGCAGTT
CCCCGTGGGTCGTGTCGGCCGCTTTCTCAAGGCCGGTAAATACTCCCAAC
GCGTGGGTGCGGGTGCCCCCGTGTACCTGGCGGCCGTGCTAGAATATCTG
ACCGCTGAGGTGCTGGAACTGGCGGGGAACGCGGCCCGCGATAACAAGAA
GGCCCGCATCATCCCTCGCCACGTTCAGCTGGCCGTCCGTAACGACGAGG
AGCTCAACAAATTACTCGGAGAGGTGACCATCGCTTCGGGCGGTGTGCTA
CCCAACATTCACGCCGTACTCCTTCCTAAGAAGGTGACGAGTAAGTGA
back to top