mRNA_P-canaliculata_contig105416.747.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105416.747.1
Unique NamemRNA_P-canaliculata_contig105416.747.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.540e-21
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIR+Y DGAMSKLL++L KD+ N  VQLQGPFLV+ L+PPPAHRNVIMIAAGTG+NP
Sbjct: 1206 RIRMYHDGAMSKLLEKLSKDTDNVAVQLQGPFLVNKLAPPPAHRNVIMIAAGTGVNP 1262
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIRLY DGAMSKLL+RL KD+ N  VQLQGPF++  L PPPAHRNV+MIAAGTGINP
Sbjct:  837 RIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINP 893
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIRLY DGAMSKLL+RL KD+ N  VQLQGPF++  L PPPAHRNV+MIAAGTGINP
Sbjct: 1527 RIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINP 1583
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-19
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIR+Y DGAMSKLL++L +D+ NA VQLQGPFL++ L+PPP +RNVIMIAAGTG+NP
Sbjct: 1212 RIRMYHDGAMSKLLEKLSQDTDNAAVQLQGPFLINKLAPPPVYRNVIMIAAGTGVNP 1268
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.030e-19
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIRLY DGAMS+LL++L KD+ N  +QLQGPF++  L PPPAHRNV+MIAAGTG+NP
Sbjct: 1039 RIRLYHDGAMSQLLEKLSKDTDNPAIQLQGPFIITKLVPPPAHRNVVMIAAGTGVNP 1095
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BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.030e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            RIRLY DGAMSKLL+ L KDS N TV+LQ PF++  L PPPAHRNV+MIAAGTGINP
Sbjct: 1288 RIRLYTDGAMSKLLENLAKDSDNPTVRLQAPFVIQKLVPPPAHRNVMMIAAGTGINP 1344
[Close]
BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: D8LN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN38_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.190e-18
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:    5 IRLYKDGAMSKLLDRLPKDSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            IR+Y DGAMSKLL++L +D+ N TVQLQ PFL++ L+P PAHR VIMIAAGT +NP
Sbjct:    3 IRMYHDGAMSKLLEKLSEDADNPTVQLQVPFLIEKLAPRPAHRKVIMIAAGTAVNP 58
[Close]
BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.970e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:   68 NATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            N  VQLQGPFL   L+PPPAHRNV+MIAAGTG+NP
Sbjct:  599 NPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 633
[Close]
BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.980e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:   68 NATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGINP 172
            N  VQLQGPFL   L+PPPAHRNV+MIAAGTG+NP
Sbjct:  778 NPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 812
[Close]
BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-8
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 RIRLYKDGAMSKLLDRLPK-------DSANATVQLQGPFLVDSLSPPPAHRNVIMIAAGTGIN 169
            RIRLY DG M+ LL +L +       +  N+ VQLQG FL   L+P PAHRN +MIAAGTG N
Sbjct:   84 RIRLYPDGLMNGLLAQLIRVRGIGHQNLDNSAVQLQGAFLRHWLTPSPAHRNAVMIAAGTGPN 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105416.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G7J2_ECTSI3.540e-2177.19Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FX04_ECTSI1.230e-2077.19Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE1.230e-2077.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J1_ECTSI1.090e-1971.93Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FQW8_ECTSI2.030e-1970.18Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI2.030e-1975.44Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LN38_ECTSI1.190e-1867.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC42_9PHAE2.970e-977.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX59_9PHAE2.980e-977.14Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5K906_9PHAE1.400e-853.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105416contigP-canaliculata_contig105416:184..901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.0674798-CDS-P-canaliculata_contig105416:183..2411622815626.0674798-CDS-P-canaliculata_contig105416:183..241Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105416 184..241 +
1693494173.5000377-CDS-P-canaliculata_contig105416:183..2411693494173.5000377-CDS-P-canaliculata_contig105416:183..241Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105416 184..241 +
1622815626.0813167-CDS-P-canaliculata_contig105416:784..9001622815626.0813167-CDS-P-canaliculata_contig105416:784..900Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105416 785..900 +
1693494173.5101616-CDS-P-canaliculata_contig105416:784..9001693494173.5101616-CDS-P-canaliculata_contig105416:784..900Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105416 785..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105416.747.1prot_P-canaliculata_contig105416.747.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105416 184..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105416.747.1

>prot_P-canaliculata_contig105416.747.1 ID=prot_P-canaliculata_contig105416.747.1|Name=mRNA_P-canaliculata_contig105416.747.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=58bp
ADQALQGRCHEQAFGPAPEGFRKRDRPAPRSFSRGQPQPASSPSQRHHDR
RGHRHQSK
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mRNA from alignment at P-canaliculata_contig105416:184..901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105416.747.1 ID=mRNA_P-canaliculata_contig105416.747.1|Name=mRNA_P-canaliculata_contig105416.747.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=718bp|location=Sequence derived from alignment at P-canaliculata_contig105416:184..901+ (Pelvetia canaliculata dioecious)
GCGGATCAGGCTCTACAAGGACGGTGCCATGAGCAAGCTTTTGGACCGGC
TCCCGAAGGTGAGACCTAAATGGTGTGGGCCTTGGAATACGGCCTTTAGC
TGATGCAGCGCCATTAATGGTTGGGATATAGTGTTTGTAGTACCGAAATG
TATACCCGTAGATAATAATTGGTTAGGGGCCTCGGTGCAATGATTGAAAA
GACCAGTTGCTCGCCATTGCTCCGGGAAGGGAGAATGGGAATGCCGCCGG
CGACATTGAATGTCCACAACCACACGCAGTGAGTTAACAGCTGTCGGTAT
CCTATTTTTTGGGGGGGAGGGAAGGATGTCGTGTTTCCAAATGTTATGCA
CCGTTGCTGTTTGCTTTTGAATGGAGAATACGTTGTACGTTTTTCTTCCG
GATGGTGTATTTTTACCTTGTGACGTGGGGTTTGATTTTGACATCAACTC
ATACGGAAATTCAATCAATCAAAATCAATCCCTTTCACGATGCCTCGCCT
GGAGAGCCCCTGAAACCCGCGGCGAGCTTCTAAGCCCGCGTGGCGAGCGC
GCGTATTTTTCAACGCCCGCGCAACGCGTTGTGACGTACGCTGGATGGCA
GGATTCCGCAAACGCGACCGTCCAGCTCCAAGGTCCTTTTCTCGTGGACA
GCCTCAGCCCGCCTCCAGCCCATCGCAACGTCATCATGATCGCCGCGGGC
ACCGGCATCAATCCAAGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig105416:184..901+

>mRNA_P-canaliculata_contig105416.747.1 ID=mRNA_P-canaliculata_contig105416.747.1|Name=mRNA_P-canaliculata_contig105416.747.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at P-canaliculata_contig105416:184..901+ (Pelvetia canaliculata dioecious)
GCGGATCAGGCTCTACAAGGACGGTGCCATGAGCAAGCTTTTGGACCGGC
TCCCGAAGGCGGATCAGGCTCTACAAGGACGGTGCCATGAGCAAGCTTTT
GGACCGGCTCCCGAAGGATTCCGCAAACGCGACCGTCCAGCTCCAAGGTC
CTTTTCTCGTGGACAGCCTCAGCCCGCCTCCAGCCCATCGCAACGTCATC
ATGATCGCCGCGGGCACCGGCATCAATCCAAGGATTCCGCAAACGCGACC
GTCCAGCTCCAAGGTCCTTTTCTCGTGGACAGCCTCAGCCCGCCTCCAGC
CCATCGCAACGTCATCATGATCGCCGCGGGCACCGGCATCAATCCAAG
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