mRNA_P-canaliculata_contig10540.745.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10540.745.1
Unique NamemRNA_P-canaliculata_contig10540.745.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.500e-46
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:   88 RRSDWECSKCRALNFARRDHCFGCGAPIGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARSTGSGDGLIVEGIKA 435
            +R+DWECSKC  LNFARRD CFGCGA +G+G+ ++IPTNVLR+SGLRRST +E+VVLALKPFAPVK+A LAVHPTT ASLRAC+ EF SVE AQHTL+TA   G G GL +EG  A
Sbjct:   74 KRADWECSKCSTLNFARRDRCFGCGAAMGKGYRTTIPTNVLRVSGLRRSTTSEQVVLALKPFAPVKDAHLAVHPTTNASLRACHVEFQSVEHAQHTLDTASVEGDG-GLTIEGEPA 188
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: M4CS65_BRARP (Uncharacterized protein n=10 Tax=Brassiceae TaxID=981071 RepID=M4CS65_BRARP)

HSP 1 Score: 56.6 bits (135), Expect = 1.600e-6
Identity = 39/117 (33.33%), Postives = 47/117 (40.17%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCGAP----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C  P                 GR    S PT+VL + GL      E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  366 SDWICTICGCINFARRTSCFQCNEPKTDDSPSVDVGLSNSTAGRRSSESGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFFSVEDATKALEATNGT 482
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: A0A816PE80_BRANA ((rape) hypothetical protein n=3 Tax=Brassica TaxID=3705 RepID=A0A816PE80_BRANA)

HSP 1 Score: 56.6 bits (135), Expect = 1.660e-6
Identity = 39/117 (33.33%), Postives = 47/117 (40.17%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCGAP----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C  P                 GR    S PT+VL + GL      E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  894 SDWICTICGCINFARRTSCFQCNEPKTDDSPSVDVGLSNSTAGRRSSESGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFFSVEDATKALEATNGT 1010
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: A0A7C9AUR1_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AUR1_OPUST)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-6
Identity = 39/118 (33.05%), Postives = 50/118 (42.37%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C                  AP+GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  360 SDWMCTICGCVNFARRVSCFQCNESRTDDAPPADLSSSNPAPLGRKGAEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGT 477
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: A0A7C9AWL4_OPUST (Uncharacterized protein n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AWL4_OPUST)

HSP 1 Score: 56.2 bits (134), Expect = 2.180e-6
Identity = 39/118 (33.05%), Postives = 50/118 (42.37%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C                  AP+GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  360 SDWMCTICGCVNFARRVSCFQCNESRTDDAPPADLSSSNPAPLGRKGAEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGT 477
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: UPI00192A0F0A (LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0F0A)

HSP 1 Score: 56.2 bits (134), Expect = 2.190e-6
Identity = 38/118 (32.20%), Postives = 49/118 (41.53%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C                   P+GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  369 SDWMCTMCGCVNFARRTSCFQCNEGRTEDAPLADVASSNPTPLGRKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDATKALEATNGT 486
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: UPI001C4F197B (SUPPRESSOR OF ABI3-5-like isoform X3 n=3 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F197B)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-6
Identity = 38/118 (32.20%), Postives = 49/118 (41.53%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  387 SDWMCTICNCVNFARRTSCFQCNEPRTDDAAAADVASSNPTQLGRKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 504
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: UPI001CC45291 (SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC45291)

HSP 1 Score: 55.5 bits (132), Expect = 4.030e-6
Identity = 38/118 (32.20%), Postives = 49/118 (41.53%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 511
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: A0A251LG50_MANES (Uncharacterized protein n=7 Tax=Crotonoideae TaxID=235631 RepID=A0A251LG50_MANES)

HSP 1 Score: 55.5 bits (132), Expect = 4.070e-6
Identity = 38/118 (32.20%), Postives = 49/118 (41.53%), Query Frame = 1 
Query:   94 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 511
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BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Match: K7MGE9_SOYBN (Uncharacterized protein n=27 Tax=Phaseoleae TaxID=163735 RepID=K7MGE9_SOYBN)

HSP 1 Score: 55.5 bits (132), Expect = 4.070e-6
Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 1 
Query:   16 GWGPDALLIADRGASAPQAPHGRPRRSDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLAVHPTTGASLRACYAEFASVELAQHTLETARST 396
            G GPD  + +     +   P      SDW C+ C  +NFARR  C+ C  P                 IG+    + PT+VL + GL  +   E +       AP+K+ RL     T  S    +  F SVE A   LE    T
Sbjct:  396 GPGPDGAMKSGHNYKSMMVP------SDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGT 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10540.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7L5_ECTSI2.500e-4671.55RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto... [more]
M4CS65_BRARP1.600e-633.33Uncharacterized protein n=10 Tax=Brassiceae TaxID=... [more]
A0A816PE80_BRANA1.660e-633.33(rape) hypothetical protein n=3 Tax=Brassica TaxID... [more]
A0A7C9AUR1_OPUST2.080e-633.05Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A7C9AWL4_OPUST2.180e-633.05Uncharacterized protein n=3 Tax=Opuntia streptacan... [more]
UPI00192A0F0A2.190e-632.20LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 n=1 Tax=... [more]
UPI001C4F197B2.200e-632.20SUPPRESSOR OF ABI3-5-like isoform X3 n=3 Tax=Macad... [more]
UPI001CC452914.030e-632.20SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot es... [more]
A0A251LG50_MANES4.070e-632.20Uncharacterized protein n=7 Tax=Crotonoideae TaxID... [more]
K7MGE9_SOYBN4.070e-629.17Uncharacterized protein n=27 Tax=Phaseoleae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10540contigP-canaliculata_contig10540:4517..6151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue5.3e-40
Seed eggNOG ortholog2880.D7G7L5
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0154@1,KOG0154@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size437
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10540.745.1prot_P-canaliculata_contig10540.745.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10540 4517..6151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.969286-CDS-P-canaliculata_contig10540:4516..47021622815625.969286-CDS-P-canaliculata_contig10540:4516..4702Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 4517..4702 -
1693494173.4528913-CDS-P-canaliculata_contig10540:4516..47021693494173.4528913-CDS-P-canaliculata_contig10540:4516..4702Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 4517..4702 -
1622815625.981149-CDS-P-canaliculata_contig10540:5279..54141622815625.981149-CDS-P-canaliculata_contig10540:5279..5414Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 5280..5414 -
1693494173.4622111-CDS-P-canaliculata_contig10540:5279..54141693494173.4622111-CDS-P-canaliculata_contig10540:5279..5414Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 5280..5414 -
1622815625.993149-CDS-P-canaliculata_contig10540:6037..61511622815625.993149-CDS-P-canaliculata_contig10540:6037..6151Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 6038..6151 -
1693494173.4701629-CDS-P-canaliculata_contig10540:6037..61511693494173.4701629-CDS-P-canaliculata_contig10540:6037..6151Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10540 6038..6151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10540.745.1

>prot_P-canaliculata_contig10540.745.1 ID=prot_P-canaliculata_contig10540.745.1|Name=mRNA_P-canaliculata_contig10540.745.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=145bp
MSDDAGWGPDALLIADRGASAPQAPHGRPRRSDWECSKCRALNFARRDHC
FGCGAPIGRGFHSSIPTNVLRLSGLRRSTAAEEVVLALKPFAPVKNARLA
VHPTTGASLRACYAEFASVELAQHTLETARSTGSGDGLIVEGIKA
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mRNA from alignment at P-canaliculata_contig10540:4517..6151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10540.745.1 ID=mRNA_P-canaliculata_contig10540.745.1|Name=mRNA_P-canaliculata_contig10540.745.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1635bp|location=Sequence derived from alignment at P-canaliculata_contig10540:4517..6151- (Pelvetia canaliculata dioecious)
ATGTCGGACGATGCCGGGTGGGGCCCAGATGCGCTCCTGATTGCCGATCG
GGGAGCCTCTGCTCCGCAGGCTCCCCACGGAAGGCCGAGGCGGAGCGACT
GGGAGTGTTCGAAGGTCAGGGGGGAGAGGGGGGGGGGTCGACCTTGGTTG
GTGTATGTACCCTGTCACAGCGCCTGCGTTTTACCTCTTTATTCAAGCCA
TCAGTCGCGAAGGGTTCTATCCTGGCTTGGCTGCGCACGAAAAGGTCAAC
GATTCGTTACGCGGGCCGGACGTTTCATTATGTAGTGTCGAAATAAATCC
TCGGGGGTGAAACGTTAAGCGAGTTTGTTTTTTTCGAGTTGGGGGCGGGA
GGGGAGGTGGGGTGAGACAAATGTTGATATTATTTACCCACCATATTTTT
TCGTTTGTTGAGATTTTTATTTCGCCGACTCTTGAACAAAAAGGGATTAC
GAGGATATCGAGAAAAAGTGGTGCTGGTTACTGTCAGATAGAGCTGGGTG
GGCCAGATGGACTTTTACCGTTTGATCTGGATGAAAAAAAATGTCTCCCC
CGAATGCCGCCCCCGCGGACTAGCCTCCTCGACCCCTCGTGTCTTTTCGC
TGTATTACCCTGTCGTTCAACGCGTGCGATATCTTGTTCACACGTGCCGC
CTTCTACCACCCCCTTCTCCCCTCCCCCTACATCCCTCCACCTCGGGAAC
TCCCGATCCGACGATTTGTAACTGTTTTGGTCGCTAGTGCCGTGCCCTGA
ACTTCGCTCGGCGGGATCACTGCTTCGGTTGCGGCGCTCCCATTGGGCGC
GGCTTTCACAGCTCCATCCCTACCAACGTGCTGCGATTGTCCGGCCTCAG
GAGAAGCACGGCGGCCGAAGAGGTACGAGTGGGAATTTATTATCAATCAC
TAGATTCCACCGTTCCTCTCTTTAAACGCCCACTCTGTGTAATTTGTTCG
AAGAAGGGTTGGTCACATAAGGGCTTGAGGCCTGCCGCTAGCTTCAGGCG
ACGATGGTCCTGGGAAAGCGGCGGTGGATTCACGAGGAATAACGCCTCCT
CAAAAATGATTGTTTTTCTCATCATTTAGTGACGTTCTTCGAGTATTATT
TGAAGAAAAATTTGAACGCATCTAGACCCTTCTGAGCATCCCCCAGTCAG
GGAGAAAAATGTCGAAAATAATATTTTTAATATTTTTATTCTTATTAGTA
TGGTGCTCCATTATTATTATTATTATTAGTATCATTGTTATTACCACCAC
TATGATTATTATTCTTCTATTATTATTAATATTGTTGTTTTTTTTAATTT
TTTAGTTCTATTAATACATTACTTGGGGGTTTGAAATATTATTACCATTG
TTGTTATTATCATACTATTACCATTATTGTTATTCTTCCATTGTTGTTAT
TGATATATTTTATAAATTGACGCTTCTCGGCTTTCGCGTTCATCCGCAGG
TGGTTCTCGCCCTCAAACCCTTCGCCCCGGTCAAGAACGCTCGACTCGCC
GTCCACCCGACCACGGGGGCGTCCCTGCGCGCGTGCTACGCCGAGTTCGC
CTCGGTAGAGCTAGCCCAGCACACGCTCGAGACGGCGCGCTCCACGGGCA
GCGGCGATGGCCTCATCGTCGAGGGCATCAAGGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10540:4517..6151-

>mRNA_P-canaliculata_contig10540.745.1 ID=mRNA_P-canaliculata_contig10540.745.1|Name=mRNA_P-canaliculata_contig10540.745.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at P-canaliculata_contig10540:4517..6151- (Pelvetia canaliculata dioecious)
ATGTCGGACGATGCCGGGTGGGGCCCAGATGCGCTCCTGATTGCCGATCG
GGGAGCCTCTGCTCCGCAGGCTCCCCACGGAAGGCCGAGGCGGAGCGACT
GGGAGTGTTCGAAGATGTCGGACGATGCCGGGTGGGGCCCAGATGCGCTC
CTGATTGCCGATCGGGGAGCCTCTGCTCCGCAGGCTCCCCACGGAAGGCC
GAGGCGGAGCGACTGGGAGTGTTCGAAGTGCCGTGCCCTGAACTTCGCTC
GGCGGGATCACTGCTTCGGTTGCGGCGCTCCCATTGGGCGCGGCTTTCAC
AGCTCCATCCCTACCAACGTGCTGCGATTGTCCGGCCTCAGGAGAAGCAC
GGCGGCCGAAGAGTGCCGTGCCCTGAACTTCGCTCGGCGGGATCACTGCT
TCGGTTGCGGCGCTCCCATTGGGCGCGGCTTTCACAGCTCCATCCCTACC
AACGTGCTGCGATTGTCCGGCCTCAGGAGAAGCACGGCGGCCGAAGAGGT
GGTTCTCGCCCTCAAACCCTTCGCCCCGGTCAAGAACGCTCGACTCGCCG
TCCACCCGACCACGGGGGCGTCCCTGCGCGCGTGCTACGCCGAGTTCGCC
TCGGTAGAGCTAGCCCAGCACACGCTCGAGACGGCGCGCTCCACGGGCAG
CGGCGATGGCCTCATCGTCGAGGGCATCAAGGCCGTGGTTCTCGCCCTCA
AACCCTTCGCCCCGGTCAAGAACGCTCGACTCGCCGTCCACCCGACCACG
GGGGCGTCCCTGCGCGCGTGCTACGCCGAGTTCGCCTCGGTAGAGCTAGC
CCAGCACACGCTCGAGACGGCGCGCTCCACGGGCAGCGGCGATGGCCTCA
TCGTCGAGGGCATCAAGGCC
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