mRNA_P-canaliculata_contig1054.736.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1054.736.1
Unique NamemRNA_P-canaliculata_contig1054.736.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig1054.736.1 vs. uniprot
Match: A0A8H6VRC7_9PEZI (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Pseudocercospora fuligena TaxID=685502 RepID=A0A8H6VRC7_9PEZI)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-16
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 2 
Query:   56 GMMCTHLGTSKLSFTYGSAPDLSAHIFSPPDSDVPNRLKLLPVDGNPHSRIRALLERELHRSPLDQAFDTLTFHLTFTLSLLEAFDRLQAVDFPHHNVTIHPYSPLHFRLIYAAPLPAVTFNIIAKK 436
            G  CT +G   LSF Y  A DL+A I    D+    +LKL P++ NPH RIR  LE+  +++  +Q    LT+ L  TL LL  FD+L++ +    +V+++      + L Y APLPA +F I  +K
Sbjct:  826 GYRCTDVGLDILSFIYSDALDLAAQITFTKDAAQSAKLKLTPINNNPHQRIRVALEKSYNKAK-NQGITQLTYDLRVTLPLLRLFDKLESAEPAGESVSVYTRDVHRYTLAYKAPLPACSFAISVQK 951
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BLAST of mRNA_P-canaliculata_contig1054.736.1 vs. uniprot
Match: A0A139H7J0_9PEZI (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Pseudocercospora TaxID=131324 RepID=A0A139H7J0_9PEZI)

HSP 1 Score: 80.5 bits (197), Expect = 2.070e-14
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 2 
Query:   50 QRGMMCTHLGTSKLSFTYGSAPDLSAHIFSPPDSDVPNRLKLLPVDGNPHSRIRALLERELHRSPLDQAFDTLTFHLTFTLSLLEAFDRLQAVDFPHHNVTIHPYSPLHFRLIYAAPLPAVTFNIIAKK---PAPGPASV 460
            Q G  CT +G   LSF Y    DL+A I    ++    +LKL P++ NPH RIR  LE+  +R+  ++    L + L  TL LL  FD+L++ +    + +++      + L Y APLPA +F I  ++     PGP  V
Sbjct:  818 QFGYRCTDVGLDVLSFVYSDVHDLAAQITFDKNAAQSAKLKLSPINSNPHQRIRVALEKSYNRAK-NRGLTQLAWDLRVTLPLLRLFDKLESAESSGESASVYTRDVHRYTLTYKAPLPACSFAISVQRGQSQIPGPTGV 956
[Close]
BLAST of mRNA_P-canaliculata_contig1054.736.1 vs. uniprot
Match: A0A4U0UVL8_9PEZI (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UVL8_9PEZI)

HSP 1 Score: 80.5 bits (197), Expect = 2.100e-14
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 2 
Query:   68 THLGTSKLSFTYGSA-PDLSAHIFSPPDSDVPNRLKLLPVDGNPHSRIRALLERELHRSPLDQAFDTLTFHLTFTLSLLEAFDRLQAVDFPHHNVTIHPYSPLHFRLIYAAPLPAVTFNIIAKKPAPGPASVPRWYIKP 481
            T +  + LSF Y +  P L A +    +   P RLKL PVD NPH RIR LLE+ L  +   +AF      LTFTL  L+A +R++     H  V++       + L Y APLP   F+I  +    G  ++  W+++P
Sbjct:  921 TTVSMANLSFAYSNTTPVLHAQLTFARNGTGPMRLKLEPVDSNPHRRIRVLLEQCLDGTA-KEAFQLFAQLLTFTLPTLQALERIEGTRVAHQTVSVRVRGAAWYSLAYKAPLPVCAFSIRLRPKRQGNKTIAHWHVEP 1058
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1054.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8H6VRC7_9PEZI2.050e-1637.80Mediator of RNA polymerase II transcription subuni... [more]
A0A139H7J0_9PEZI2.070e-1434.29Mediator of RNA polymerase II transcription subuni... [more]
A0A4U0UVL8_9PEZI2.100e-1435.25Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1054contigP-canaliculata_contig1054:57..585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score86.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog430998.XP_007672589.1
Preferred nameRGR1
KEGG koko:K15156
KEGG Pathwayko04919,map04919
GOsGO:0000122,GO:0000428,GO:0001085,GO:0001091,GO:0001093,GO:0001098,GO:0001099,GO:0001103,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016591,GO:0016592,GO:0019219,GO:0019222,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070491,GO:0070847,GO:0080090,GO:0090575,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Mediator complex subunit MED14
EggNOG OGs1ZYYU@147541,39KXG@33154,3MINV@451867,3NWTA@4751,3QKMN@4890,KOG1875@1,KOG1875@2759
COG Functional cat.K
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.3513145-UTR-P-canaliculata_contig1054:56..751622815625.3513145-UTR-P-canaliculata_contig1054:56..75Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1054 57..75 +
1693494173.122953-UTR-P-canaliculata_contig1054:56..751693494173.122953-UTR-P-canaliculata_contig1054:56..75Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1054 57..75 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.3630242-CDS-P-canaliculata_contig1054:75..5851622815625.3630242-CDS-P-canaliculata_contig1054:75..585Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1054 76..585 +
1693494173.1335897-CDS-P-canaliculata_contig1054:75..5851693494173.1335897-CDS-P-canaliculata_contig1054:75..585Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1054 76..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1054.736.1prot_P-canaliculata_contig1054.736.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1054 76..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1054.736.1

>prot_P-canaliculata_contig1054.736.1 ID=prot_P-canaliculata_contig1054.736.1|Name=mRNA_P-canaliculata_contig1054.736.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=170bp
MYRWGTIEGPQRGMMCTHLGTSKLSFTYGSAPDLSAHIFSPPDSDVPNRL
KLLPVDGNPHSRIRALLERELHRSPLDQAFDTLTFHLTFTLSLLEAFDRL
QAVDFPHHNVTIHPYSPLHFRLIYAAPLPAVTFNIIAKKPAPGPASVPRW
YIKPILSGPPLPDTFHTVLG
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mRNA from alignment at P-canaliculata_contig1054:57..585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1054.736.1 ID=mRNA_P-canaliculata_contig1054.736.1|Name=mRNA_P-canaliculata_contig1054.736.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=529bp|location=Sequence derived from alignment at P-canaliculata_contig1054:57..585+ (Pelvetia canaliculata dioecious)
CTCCACCTTTCACGTACCGATGTATCGTTGGGGCACTATAGAAGGCCCCC
AACGAGGCATGATGTGCACACACCTCGGCACCTCCAAGCTCTCCTTCACC
TACGGCAGTGCCCCCGATCTGAGCGCACACATCTTCTCGCCCCCGGACAG
CGATGTCCCGAACCGTCTGAAACTCCTCCCTGTCGACGGCAACCCTCACT
CGCGCATCCGTGCTCTGCTCGAGCGTGAGCTGCACCGCTCCCCACTCGAC
CAGGCCTTCGACACCCTCACCTTCCACCTCACCTTCACTCTCTCCCTCCT
GGAGGCCTTTGACCGCCTCCAAGCCGTCGACTTTCCCCATCATAACGTGA
CCATCCACCCCTACTCCCCGCTGCACTTTCGCCTCATCTACGCCGCCCCA
CTGCCGGCCGTCACCTTCAACATCATCGCGAAGAAACCCGCGCCGGGTCC
CGCCTCCGTCCCTCGCTGGTACATCAAGCCGATCCTCTCCGGGCCGCCTC
TTCCCGACACCTTCCACACCGTCCTCGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig1054:57..585+

>mRNA_P-canaliculata_contig1054.736.1 ID=mRNA_P-canaliculata_contig1054.736.1|Name=mRNA_P-canaliculata_contig1054.736.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig1054:57..585+ (Pelvetia canaliculata dioecious)
ATGTATCGTTGGGGCACTATAGAAGGCCCCCAACGAGGCATGATGTGCAC
ACACCTCGGCACCTCCAAGCTCTCCTTCACCTACGGCAGTGCCCCCGATC
TGAGCGCACACATCTTCTCGCCCCCGGACAGCGATGTCCCGAACCGTCTG
AAACTCCTCCCTGTCGACGGCAACCCTCACTCGCGCATCCGTGCTCTGCT
CGAGCGTGAGCTGCACCGCTCCCCACTCGACCAGGCCTTCGACACCCTCA
CCTTCCACCTCACCTTCACTCTCTCCCTCCTGGAGGCCTTTGACCGCCTC
CAAGCCGTCGACTTTCCCCATCATAACGTGACCATCCACCCCTACTCCCC
GCTGCACTTTCGCCTCATCTACGCCGCCCCACTGCCGGCCGTCACCTTCA
ACATCATCGCGAAGAAACCCGCGCCGGGTCCCGCCTCCGTCCCTCGCTGG
TACATCAAGCCGATCCTCTCCGGGCCGCCTCTTCCCGACACCTTCCACAC
CGTCCTCGGCATGTATCGTTGGGGCACTATAGAAGGCCCCCAACGAGGCA
TGATGTGCACACACCTCGGCACCTCCAAGCTCTCCTTCACCTACGGCAGT
GCCCCCGATCTGAGCGCACACATCTTCTCGCCCCCGGACAGCGATGTCCC
GAACCGTCTGAAACTCCTCCCTGTCGACGGCAACCCTCACTCGCGCATCC
GTGCTCTGCTCGAGCGTGAGCTGCACCGCTCCCCACTCGACCAGGCCTTC
GACACCCTCACCTTCCACCTCACCTTCACTCTCTCCCTCCTGGAGGCCTT
TGACCGCCTCCAAGCCGTCGACTTTCCCCATCATAACGTGACCATCCACC
CCTACTCCCCGCTGCACTTTCGCCTCATCTACGCCGCCCCACTGCCGGCC
GTCACCTTCAACATCATCGCGAAGAAACCCGCGCCGGGTCCCGCCTCCGT
CCCTCGCTGGTACATCAAGCCGATCCTCTCCGGGCCGCCTCTTCCCGACA
CCTTCCACACCGTCCTCGGC
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