mRNA_P-canaliculata_contig10533.728.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 181 bits (458), Expect = 2.360e-47 Identity = 116/233 (49.79%), Postives = 143/233 (61.37%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLWRELMKDK---------RVAD----EDLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD DSEL+LALRL P SLEISAA K E+K + P + +Y +AARNLREY+GVPSMTP KL++TLA LKL P+ L KQGL PK L + + R+ D EDLAE + A +E M+VEDD + +ND V A+ SS + G E ++D+ + IH A I I+LRPRE RPLLVAL V P R KLGL+D KDL
Sbjct: 84 FTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGK-ENK------ATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNE-----EENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDL 304
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 177 bits (450), Expect = 2.970e-46 Identity = 113/233 (48.50%), Postives = 140/233 (60.09%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLW----RELMKDKRVA---------DEDLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD DSEL LA+RL P SLEISAA K + + P R+Y +AARNLREY+GVPSMTP KL++TLA LKL P+ L KQGL PK L E + +V+ +EDLAE++ A +ELM++EDD + +ND V A SS + E + + + N IH A I I+LRPRE RPLLVAL V P R KLGL+D KDL
Sbjct: 73 FTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEM-------PDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNL-----IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 293
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.960e-44 Identity = 114/233 (48.93%), Postives = 143/233 (61.37%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPK----KLWRELMKDKRVA---------DEDLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD DSEL+LA+RL P SLEISAA K E+K KP R+Y +AARNLREY+GVPSMTP KL++TLA L+L P+ L KQGL PK ++ E + +V+ +EDLAE++ A +ELM+VEDD + +ND V A SS E + + + N IH A I I+LRPRE RPLLVAL V P R KLGL++ KDL
Sbjct: 57 FTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGK-ENK------PANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNL-----IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 174 bits (441), Expect = 3.880e-44 Identity = 115/238 (48.32%), Postives = 142/238 (59.66%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLWREL-------MKDKRVA------DEDLAETIRADIELMAVEDDTRRFNDDLVE-----NVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD DSEL+LA+RL P SLEISAA K E+K KP R+Y +AARNLREY+GVPSMT KL++TLA LKL PR L KQGL PK L + MK +V +EDLAE++ A +ELM+VEDD + N+ V + AA P + + ++D+ K IH A I I+LRPRE RPLLVAL V P R KLGL++ K L
Sbjct: 57 FTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGK-ENK------PDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYL 287
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 173 bits (438), Expect = 6.510e-44 Identity = 116/243 (47.74%), Postives = 146/243 (60.08%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPD-RIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPK----KLWRELMKDKRVA---------DEDLAETIRADIELMAVEDDTRRFNDDLVE-----NVAAKPSSKEKGGEGATERTDDDEQFN----RRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD DSEL LA+RL P SLEISA L K DP+ R+Y +AARNLREY+GVPSMT KL++TLA LKL P+ L KQGL PK ++ E + +V+ +EDLAE++ A +ELM+VEDD + +ND V + AA P + + +T D++E+ N K IH A I I+LRPRE RPLLVAL V P R KLGL+D KDL
Sbjct: 75 FTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAT--------LKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPIT----AKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 305
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.140e-43 Identity = 111/233 (47.64%), Postives = 142/233 (60.94%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPK----KLWRELMKDKRVA---------DEDLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDL 665
FTYKD +GD IVFD +SEL LALRL P SLEISAA K E+K + P +++Y +AARNLREY+GVPSMTP KL++TLA LKL P+ L KQGL PK ++ E + +V+ +EDLAE++ A +ELM+VED + +ND V A+ S A + + ++ K IH A I I+LRPRE RPLLVAL V P R KLGL+ KDL
Sbjct: 75 FTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGK-ENK------ATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFP------ANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDL 294
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 142 bits (357), Expect = 2.500e-34 Identity = 101/222 (45.50%), Postives = 130/222 (58.56%), Query Frame = 3
Query: 6 FTYKDSEGDAIVFDTDSELSLALRLSPKSLEISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPK----KLWRELMKDKRVA---------DEDLAETIRADIELMAVEDDTRRFNDDLVEN-----VAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGV 617
FTYKD +GD IVFD DSEL LA+RL P SLEISAA K ESK KP R+Y +AARNLREY+GVPSMTP KL++TLA LKL P+ L KQGL PK ++ E + +V+ +EDLA+++ A +ELM+VED + +ND V AA P + E + ++D+ K IH A I I+LRPRE L V++ V
Sbjct: 72 FTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALK-ESK------PANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNLIHKAFIAGGIQLRPREGLLLGVSIFV 285
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE) HSP 1 Score: 103 bits (257), Expect = 5.520e-20 Identity = 71/177 (40.11%), Postives = 97/177 (54.80%), Query Frame = 3
Query: 177 IYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLWRELMKDKRVADE-DLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLLVALGVHPRRFVKLGLIDAKDLPSPPYHGRGRRGG 704
+Y ARNLREYHGVPSMT L +T+ LL+L P L QGL P+KL + AD D + + +++E +D+ + +DD ++ + + + N+R K P+HAAL+ A I LRPRE RPLL ALGV P R VKLGL+ ++L GRRGG
Sbjct: 26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHADTTDSSGSSGSEVEPEQADDN--QVSDDXXXXXXXSGDTEH---DNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRR--SRPGGRRGG 195
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.390e-10 Identity = 56/145 (38.62%), Postives = 72/145 (49.66%), Query Frame = 3
Query: 177 IYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLWRELMKDKRVADEDLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATER--TDDDEQFNRRP-KMPIHAALIGADIKLRPREARPLL 602
++ AARNLREYHGVPS+TPG L T+ LL+L P L QGL PK L+K A D T + E +F+ DL N + GG+ + T + F R K PI A + ++LRPRE RPLL
Sbjct: 41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPK----ILLKGNSTAGVDADSTDGSGGFEAEEEQANNQFSHDLSSNSSD-------GGDTGNDNIVTQNSIGFEARASKHPIQAVFVAVGVQLRPRETRPLL 174
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 4.980e-10 Identity = 61/176 (34.66%), Postives = 86/176 (48.86%), Query Frame = 3
Query: 96 EISAARKVESKVPLSTMSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKQGLVPKKLWRELMKDKRVADE-------DLAETIRADIELMAVEDDTRRFNDDLVENVAAKPSSKEKGGEGATERTDDDEQFNRRPKMPIHAALIGADIKLRPREARPLL 602
+IS A+ V +K + P +Y AARNL EYHGVPSMT G L +T+ LL+L P L QGL PK +L++ K A + E+ + D + +DD N ++ + + AT+ + D E K PIHA + A ++LRPRE RPLL
Sbjct: 28 DISMAKCVTNKPSCKRAVEPNP----LLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPK----QLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDS--NTNSRDGTDIEHDHVATQDSIDIETGA--SKHPIHAVFVAAGVQLRPRETRPLL 191 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10533.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10533.728.1 >prot_P-canaliculata_contig10533.728.1 ID=prot_P-canaliculata_contig10533.728.1|Name=mRNA_P-canaliculata_contig10533.728.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=255bp MSQTKPHDPDRIYNVAARNLREYHGVPSMTPGKLMRTLALLKLCPRHLTKback to top mRNA from alignment at P-canaliculata_contig10533:7846..10909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10533.728.1 ID=mRNA_P-canaliculata_contig10533.728.1|Name=mRNA_P-canaliculata_contig10533.728.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3064bp|location=Sequence derived from alignment at P-canaliculata_contig10533:7846..10909+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10533:7846..10909+ >mRNA_P-canaliculata_contig10533.728.1 ID=mRNA_P-canaliculata_contig10533.728.1|Name=mRNA_P-canaliculata_contig10533.728.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at P-canaliculata_contig10533:7846..10909+ (Pelvetia canaliculata dioecious)back to top |