mRNA_P-canaliculata_contig105279.720.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105279.720.1
Unique NamemRNA_P-canaliculata_contig105279.720.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig105279.720.1 vs. uniprot
Match: A0A518G4I6_9BACT (SWIM-type domain-containing protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G4I6_9BACT)

HSP 1 Score: 303 bits (776), Expect = 7.180e-101
Identity = 146/253 (57.71%), Postives = 181/253 (71.54%), Query Frame = 1 
Query:    1 EEVAQDGELNHKEIKQLARWLNENEEGRKTWPASQFFPLLKDVFADGKIERSEAERVGRLIQKVRREWAREHALSGSKLDQSLLDNLITKFDPEQPELPVIENEIEVTS-RLSDMEPSSKLNPKYQVDFSKPTCSCDDFRTYRQHLPERHISRCCEHIMLGYSQVRPKEGWPSWLNSLLEAGYRPLPSQSWAIVESDKCDFLVSSADPDWGNVYAKIDGNDVKYSYHVSEKRWAYDHVPGEAETLAETVNRLT 756
            EEVA+DGEL H+EI +LA+WLN+N +GRKTWPASQF PLLKDVFADGKI+ +EA +VGRLIQKVRREWAREHALSG K     LD+ I  FD   P L  I  +++V S R  D+         Y +D + P+CSC DF++YRQHLP  HISRCC+HIM GY+++RP  GWPSWL   LEAG+RP P Q W +VE   C++LVSSA P+WGNVYA+IDG   KY + + E RW+Y   P E  +LA  + RL+
Sbjct:   14 EEVAEDGELTHREIVRLAKWLNDNMDGRKTWPASQFLPLLKDVFADGKIDEAEAIQVGRLIQKVRREWAREHALSGVKPFGVKLDDAIGCFDDGAPRLIAIPTKLQVASFREPDL--------TYDLDLTAPSCSCPDFQSYRQHLPVGHISRCCKHIMQGYAEIRPSSGWPSWLEPFLEAGFRPHPEQEWCVVEVSTCNYLVSSASPEWGNVYARIDGVSEKYGFSIDEHRWSYGKEPAEPASLANAIRRLS 258
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BLAST of mRNA_P-canaliculata_contig105279.720.1 vs. uniprot
Match: A0A7C3DQU4_9BACT (SWIM-type domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3DQU4_9BACT)

HSP 1 Score: 175 bits (443), Expect = 1.690e-50
Identity = 80/248 (32.26%), Postives = 138/248 (55.65%), Query Frame = 1 
Query:    1 EEVAQDGELNHKEIKQLARWLNENEEGRKTWPASQFFPLLKDVFADGKIERSEAERVGRLIQKVRREWAREHALSGSKLDQSLLDNLITKFDPEQPELPVIENEIEVTSRLSDMEPSSKLNPKYQVDFSKPTCSCDDFRTYRQHLPERHISRCCEHIMLGYSQVRPKEGWPSWLNSLLEAGYRPLPSQSWAIVESDKCDFLVSSADPDWGNVYAKIDGNDVKYSYHVSEKRWAYDHVPGEAETLAETV 744
            E + +DGEL+  E+  LA WLN++ E    WP +     L++V+ADGK+ ++E  ++GRL+ ++R+EWA+  A    +L   L+  +    D  +P LP +         ++ ++  +++  +Y VD S PTCSC ++R YR  LP  H++RCC+H+   YS + P+ GWP WL +       P P Q W +++  +   L S+A   W NV+ +  G+  ++ Y++ E RWAY   P  ++ +   +
Sbjct:   14 ESILEDGELSGDELYHLAEWLNDHREACIHWPGNLLVKPLQEVWADGKLTKTEMRQIGRLLVQIRKEWAKRRAEEAFELAADLVRRIANNIDLSRPLLPSV-------PFITHVKSHTEVGVRYDVDLSGPTCSCPNWRAYRHSLPPGHLTRCCKHVFDAYSLLEPEAGWPGWLGAFFNLASPPHPQQDWMVLQIGQGFILASTAPTGWANVFVEEGGSYDRFGYNIFENRWAYGIEPTGSKQIRRAI 254
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BLAST of mRNA_P-canaliculata_contig105279.720.1 vs. uniprot
Match: A0A1G0PI25_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium GWB2_35_6b TaxID=1798424 RepID=A0A1G0PI25_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.660e-5
Identity = 34/124 (27.42%), Postives = 61/124 (49.19%), Query Frame = 1 
Query:  373 QVDFSKPTCSCDDFRTYRQHLPERHISRCCEHIMLGYSQVRPKEGWPSWLNSLLEAGYRPLPSQSWAIVESDKCDFLVSSADPDWGNVYAKIDGNDVKYSYHVSEKRWAYDHVPGEAETLAETV 744
            + +  K  CSCD+ +   +   +R I   C+HI    +  + K    S    LL+A  +    + + I   D+   L  +   +W NV+   +  + KYS++V+EKRWAY+  P +A+ L+  +
Sbjct:   59 EQNIYKLKCSCDEQKKLSKKYFDRDIRLACKHIYWKLTTTKVKTELDSLTKLLLDAFQKSNEMKLFKISFKDEILILGFTNPAEWINVFTGKEKWN-KYSFNVTEKRWAYNKFPKDAKLLSAKI 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105279.720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518G4I6_9BACT7.180e-10157.71SWIM-type domain-containing protein n=1 Tax=Aureli... [more]
A0A7C3DQU4_9BACT1.690e-5032.26SWIM-type domain-containing protein n=1 Tax=Verruc... [more]
A0A1G0PI25_9BACT1.660e-527.42Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105279contigP-canaliculata_contig105279:46..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size765
Cds size765
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.8100255-CDS-P-canaliculata_contig105279:45..8101622815623.8100255-CDS-P-canaliculata_contig105279:45..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105279 46..810 -
1693494172.2700045-CDS-P-canaliculata_contig105279:45..8101693494172.2700045-CDS-P-canaliculata_contig105279:45..810Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105279 46..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105279.720.1prot_P-canaliculata_contig105279.720.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105279 46..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105279.720.1

>prot_P-canaliculata_contig105279.720.1 ID=prot_P-canaliculata_contig105279.720.1|Name=mRNA_P-canaliculata_contig105279.720.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=255bp
EEVAQDGELNHKEIKQLARWLNENEEGRKTWPASQFFPLLKDVFADGKIE
RSEAERVGRLIQKVRREWAREHALSGSKLDQSLLDNLITKFDPEQPELPV
IENEIEVTSRLSDMEPSSKLNPKYQVDFSKPTCSCDDFRTYRQHLPERHI
SRCCEHIMLGYSQVRPKEGWPSWLNSLLEAGYRPLPSQSWAIVESDKCDF
LVSSADPDWGNVYAKIDGNDVKYSYHVSEKRWAYDHVPGEAETLAETVNR
LTNS*
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mRNA from alignment at P-canaliculata_contig105279:46..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105279.720.1 ID=mRNA_P-canaliculata_contig105279.720.1|Name=mRNA_P-canaliculata_contig105279.720.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at P-canaliculata_contig105279:46..810- (Pelvetia canaliculata dioecious)
GAAGAGGTCGCTCAAGATGGCGAGCTGAACCACAAAGAGATTAAACAGCT
CGCTAGGTGGCTCAACGAAAACGAAGAAGGACGCAAAACGTGGCCGGCGT
CTCAGTTCTTTCCGTTGCTTAAGGACGTGTTCGCTGACGGGAAAATCGAG
AGGTCTGAAGCAGAGCGGGTTGGGCGTTTAATTCAAAAAGTCCGACGAGA
ATGGGCACGAGAGCATGCGTTGTCTGGATCGAAACTTGACCAAAGCCTGC
TTGACAATCTGATAACAAAATTTGACCCGGAACAGCCAGAGCTTCCGGTG
ATTGAAAACGAAATTGAAGTAACGTCTCGGCTGAGCGATATGGAACCGTC
CAGCAAACTCAATCCTAAGTATCAGGTCGATTTCTCTAAACCGACTTGTA
GTTGCGATGATTTTAGAACTTATCGGCAACACCTTCCCGAACGACACATC
TCTCGCTGCTGCGAACACATCATGCTCGGCTACTCACAAGTCAGGCCAAA
AGAAGGATGGCCAAGTTGGCTTAACTCACTACTTGAAGCGGGATATCGGC
CGCTACCCAGTCAATCATGGGCAATCGTCGAATCGGACAAATGCGACTTC
TTGGTTTCCTCCGCCGACCCCGACTGGGGAAATGTGTACGCGAAGATCGA
TGGCAACGACGTGAAATACAGCTACCACGTTTCTGAAAAACGCTGGGCCT
ACGATCACGTGCCGGGTGAGGCCGAAACTCTCGCTGAAACTGTGAATCGC
CTGACAAATAGCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig105279:46..810-

>mRNA_P-canaliculata_contig105279.720.1 ID=mRNA_P-canaliculata_contig105279.720.1|Name=mRNA_P-canaliculata_contig105279.720.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at P-canaliculata_contig105279:46..810- (Pelvetia canaliculata dioecious)
GAAGAGGTCGCTCAAGATGGCGAGCTGAACCACAAAGAGATTAAACAGCT
CGCTAGGTGGCTCAACGAAAACGAAGAAGGACGCAAAACGTGGCCGGCGT
CTCAGTTCTTTCCGTTGCTTAAGGACGTGTTCGCTGACGGGAAAATCGAG
AGGTCTGAAGCAGAGCGGGTTGGGCGTTTAATTCAAAAAGTCCGACGAGA
ATGGGCACGAGAGCATGCGTTGTCTGGATCGAAACTTGACCAAAGCCTGC
TTGACAATCTGATAACAAAATTTGACCCGGAACAGCCAGAGCTTCCGGTG
ATTGAAAACGAAATTGAAGTAACGTCTCGGCTGAGCGATATGGAACCGTC
CAGCAAACTCAATCCTAAGTATCAGGTCGATTTCTCTAAACCGACTTGTA
GTTGCGATGATTTTAGAACTTATCGGCAACACCTTCCCGAACGACACATC
TCTCGCTGCTGCGAACACATCATGCTCGGCTACTCACAAGTCAGGCCAAA
AGAAGGATGGCCAAGTTGGCTTAACTCACTACTTGAAGCGGGATATCGGC
CGCTACCCAGTCAATCATGGGCAATCGTCGAATCGGACAAATGCGACTTC
TTGGTTTCCTCCGCCGACCCCGACTGGGGAAATGTGTACGCGAAGATCGA
TGGCAACGACGTGAAATACAGCTACCACGTTTCTGAAAAACGCTGGGCCT
ACGATCACGTGCCGGGTGAGGCCGAAACTCTCGCTGAAACTGTGAATCGC
CTGACAAATAGCTAAGAAGAGGTCGCTCAAGATGGCGAGCTGAACCACAA
AGAGATTAAACAGCTCGCTAGGTGGCTCAACGAAAACGAAGAAGGACGCA
AAACGTGGCCGGCGTCTCAGTTCTTTCCGTTGCTTAAGGACGTGTTCGCT
GACGGGAAAATCGAGAGGTCTGAAGCAGAGCGGGTTGGGCGTTTAATTCA
AAAAGTCCGACGAGAATGGGCACGAGAGCATGCGTTGTCTGGATCGAAAC
TTGACCAAAGCCTGCTTGACAATCTGATAACAAAATTTGACCCGGAACAG
CCAGAGCTTCCGGTGATTGAAAACGAAATTGAAGTAACGTCTCGGCTGAG
CGATATGGAACCGTCCAGCAAACTCAATCCTAAGTATCAGGTCGATTTCT
CTAAACCGACTTGTAGTTGCGATGATTTTAGAACTTATCGGCAACACCTT
CCCGAACGACACATCTCTCGCTGCTGCGAACACATCATGCTCGGCTACTC
ACAAGTCAGGCCAAAAGAAGGATGGCCAAGTTGGCTTAACTCACTACTTG
AAGCGGGATATCGGCCGCTACCCAGTCAATCATGGGCAATCGTCGAATCG
GACAAATGCGACTTCTTGGTTTCCTCCGCCGACCCCGACTGGGGAAATGT
GTACGCGAAGATCGATGGCAACGACGTGAAATACAGCTACCACGTTTCTG
AAAAACGCTGGGCCTACGATCACGTGCCGGGTGAGGCCGAAACTCTCGCT
GAAACTGTGAATCGCCTGACAAATAGCTAA
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