mRNA_P-canaliculata_contig105258.711.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105258.711.1
Unique NamemRNA_P-canaliculata_contig105258.711.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105258.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105258contigP-canaliculata_contig105258:197..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.3751287-CDS-P-canaliculata_contig105258:196..5261622815623.3751287-CDS-P-canaliculata_contig105258:196..526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105258 197..526 +
1693494172.0779266-CDS-P-canaliculata_contig105258:196..5261693494172.0779266-CDS-P-canaliculata_contig105258:196..526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105258 197..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105258.711.1prot_P-canaliculata_contig105258.711.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105258 197..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105258.711.1

>prot_P-canaliculata_contig105258.711.1 ID=prot_P-canaliculata_contig105258.711.1|Name=mRNA_P-canaliculata_contig105258.711.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=110bp
SFQVGSEEITTIIVEASLYKGVTTHSIDAAGVSSRTHRGPCKLQIGQHDR
HVVEVCADRSARMALLIDGELVERNLFPRMRVLTLCLVALFFISISAATL
LGVSFLFDH*
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mRNA from alignment at P-canaliculata_contig105258:197..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105258.711.1 ID=mRNA_P-canaliculata_contig105258.711.1|Name=mRNA_P-canaliculata_contig105258.711.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at P-canaliculata_contig105258:197..526+ (Pelvetia canaliculata dioecious)
AGTTTCCAAGTTGGCAGCGAAGAGATCACCACGATCATTGTCGAAGCGTC
TCTCTATAAAGGCGTCACCACACATTCGATTGACGCCGCTGGTGTCTCAT
CACGAACGCATCGCGGCCCTTGCAAACTTCAAATCGGTCAGCATGATCGG
CATGTGGTTGAAGTCTGCGCAGACCGATCTGCAAGGATGGCTTTGCTGAT
TGACGGCGAGCTGGTCGAACGCAATTTGTTCCCTCGAATGAGAGTACTAA
CCCTCTGCTTAGTTGCTTTGTTTTTCATCTCAATCTCGGCCGCGACGTTG
CTGGGTGTAAGCTTCCTTTTCGATCACTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig105258:197..526+

>mRNA_P-canaliculata_contig105258.711.1 ID=mRNA_P-canaliculata_contig105258.711.1|Name=mRNA_P-canaliculata_contig105258.711.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at P-canaliculata_contig105258:197..526+ (Pelvetia canaliculata dioecious)
AGTTTCCAAGTTGGCAGCGAAGAGATCACCACGATCATTGTCGAAGCGTC
TCTCTATAAAGGCGTCACCACACATTCGATTGACGCCGCTGGTGTCTCAT
CACGAACGCATCGCGGCCCTTGCAAACTTCAAATCGGTCAGCATGATCGG
CATGTGGTTGAAGTCTGCGCAGACCGATCTGCAAGGATGGCTTTGCTGAT
TGACGGCGAGCTGGTCGAACGCAATTTGTTCCCTCGAATGAGAGTACTAA
CCCTCTGCTTAGTTGCTTTGTTTTTCATCTCAATCTCGGCCGCGACGTTG
CTGGGTGTAAGCTTCCTTTTCGATCACTAAAGTTTCCAAGTTGGCAGCGA
AGAGATCACCACGATCATTGTCGAAGCGTCTCTCTATAAAGGCGTCACCA
CACATTCGATTGACGCCGCTGGTGTCTCATCACGAACGCATCGCGGCCCT
TGCAAACTTCAAATCGGTCAGCATGATCGGCATGTGGTTGAAGTCTGCGC
AGACCGATCTGCAAGGATGGCTTTGCTGATTGACGGCGAGCTGGTCGAAC
GCAATTTGTTCCCTCGAATGAGAGTACTAACCCTCTGCTTAGTTGCTTTG
TTTTTCATCTCAATCTCGGCCGCGACGTTGCTGGGTGTAAGCTTCCTTTT
CGATCACTAA
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