mRNA_P-canaliculata_contig105195.703.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105195.703.1
Unique NamemRNA_P-canaliculata_contig105195.703.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105195.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105195contigP-canaliculata_contig105195:51..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.684285-CDS-P-canaliculata_contig105195:50..5061622815622.684285-CDS-P-canaliculata_contig105195:50..506Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105195 51..506 +
1693494171.7315657-CDS-P-canaliculata_contig105195:50..5061693494171.7315657-CDS-P-canaliculata_contig105195:50..506Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105195 51..506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.7005918-UTR-P-canaliculata_contig105195:506..5681622815622.7005918-UTR-P-canaliculata_contig105195:506..568Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105195 507..568 +
1693494171.7420526-UTR-P-canaliculata_contig105195:506..5681693494171.7420526-UTR-P-canaliculata_contig105195:506..568Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105195 507..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105195.703.1prot_P-canaliculata_contig105195.703.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105195 51..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105195.703.1

>prot_P-canaliculata_contig105195.703.1 ID=prot_P-canaliculata_contig105195.703.1|Name=mRNA_P-canaliculata_contig105195.703.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
PSKSAVDLLTPEVRTRQKEVHHDILLPSKAVVPPLGRTRQHPAALAPAQC
YSTVRHLPAVHCGKRTSGPNQSCGRGGGLAAAAQMSHRTPRYHRRRVRTA
GADSRWYRSRCCYRCIAAGTTGYHSRCRRCDHCITEATLVNRTRCHRGRY
G*
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mRNA from alignment at P-canaliculata_contig105195:51..568+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105195.703.1 ID=mRNA_P-canaliculata_contig105195.703.1|Name=mRNA_P-canaliculata_contig105195.703.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=518bp|location=Sequence derived from alignment at P-canaliculata_contig105195:51..568+ (Pelvetia canaliculata dioecious)
CCTTCGAAGTCCGCTGTTGATCTTCTGACACCGGAGGTCCGAACACGTCA
GAAAGAGGTCCACCATGATATTCTACTTCCGTCGAAGGCCGTTGTCCCTC
CTCTTGGTCGTACACGCCAACATCCCGCTGCGCTTGCCCCTGCGCAATGC
TATTCGACAGTCCGCCATTTACCGGCGGTCCATTGCGGCAAGCGTACCTC
TGGTCCCAACCAAAGCTGCGGAAGGGGCGGGGGGCTTGCTGCCGCTGCGC
AAATGTCGCACCGTACCCCGCGCTATCATCGACGCCGCGTCCGTACTGCT
GGTGCGGACTCTCGTTGGTACCGTAGCCGTTGTTGCTACCGCTGTATTGC
GGCGGGGACCACGGGATATCATAGCCGGTGCCGCCGCTGCGACCACTGTA
TAACGGAGGCGACATTGGTGAATCGTACCCGGTGCCACCGCGGCCGCTAC
GGTTGATCTGCGGTGAGGAGGAAAGGGTTGGGACGTCGGAATATATGCGA
TCGCGCTGGAGGAGGCAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig105195:51..568+

>mRNA_P-canaliculata_contig105195.703.1 ID=mRNA_P-canaliculata_contig105195.703.1|Name=mRNA_P-canaliculata_contig105195.703.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig105195:51..568+ (Pelvetia canaliculata dioecious)
CCTTCGAAGTCCGCTGTTGATCTTCTGACACCGGAGGTCCGAACACGTCA
GAAAGAGGTCCACCATGATATTCTACTTCCGTCGAAGGCCGTTGTCCCTC
CTCTTGGTCGTACACGCCAACATCCCGCTGCGCTTGCCCCTGCGCAATGC
TATTCGACAGTCCGCCATTTACCGGCGGTCCATTGCGGCAAGCGTACCTC
TGGTCCCAACCAAAGCTGCGGAAGGGGCGGGGGGCTTGCTGCCGCTGCGC
AAATGTCGCACCGTACCCCGCGCTATCATCGACGCCGCGTCCGTACTGCT
GGTGCGGACTCTCGTTGGTACCGTAGCCGTTGTTGCTACCGCTGTATTGC
GGCGGGGACCACGGGATATCATAGCCGGTGCCGCCGCTGCGACCACTGTA
TAACGGAGGCGACATTGGTGAATCGTACCCGGTGCCACCGCGGCCGCTAC
GGTTGACCTTCGAAGTCCGCTGTTGATCTTCTGACACCGGAGGTCCGAAC
ACGTCAGAAAGAGGTCCACCATGATATTCTACTTCCGTCGAAGGCCGTTG
TCCCTCCTCTTGGTCGTACACGCCAACATCCCGCTGCGCTTGCCCCTGCG
CAATGCTATTCGACAGTCCGCCATTTACCGGCGGTCCATTGCGGCAAGCG
TACCTCTGGTCCCAACCAAAGCTGCGGAAGGGGCGGGGGGCTTGCTGCCG
CTGCGCAAATGTCGCACCGTACCCCGCGCTATCATCGACGCCGCGTCCGT
ACTGCTGGTGCGGACTCTCGTTGGTACCGTAGCCGTTGTTGCTACCGCTG
TATTGCGGCGGGGACCACGGGATATCATAGCCGGTGCCGCCGCTGCGACC
ACTGTATAACGGAGGCGACATTGGTGAATCGTACCCGGTGCCACCGCGGC
CGCTACGGTTGA
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