mRNA_P-canaliculata_contig105153.699.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105153.699.1
Unique NamemRNA_P-canaliculata_contig105153.699.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A518EPX9_9BACT (Hydroxyacylglutathione hydrolase n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EPX9_9BACT)

HSP 1 Score: 104 bits (259), Expect = 3.610e-24
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   28 MKRVRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGFAPAAL 264
            M + RI+TAA+VT+G+   V VL VRR+P LRFFGGYWAFPGG VD  DHDG+ D D AH++C+ REL EEVG   A L
Sbjct:    1 MGKTRIATAALVTRGSGHGVEVLCVRRNPILRFFGGYWAFPGGGVDLADHDGEPDADVAHQRCSFRELFEEVGLLDARL 79          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A6L8EJ66_9GAMM (NUDIX hydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EJ66_9GAMM)

HSP 1 Score: 81.3 bits (199), Expect = 4.490e-18
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   37 VRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDT-DAAHRQCALRELLEEVGFAPAALG 267
            ++ + + I+ +G+  +  V +VRR+PEL+FFGGYW FPGG V P DH G+DD  +   ++CA+RE+LEE     A LG
Sbjct:   15 IKSAASVILVRGSDEEPEVYLVRRAPELKFFGGYWVFPGGNVSPVDHHGEDDPGELVLKRCAVREILEETDILSATLG 92          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A7K0QLY4_9ACTN (NUDIX domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0QLY4_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 5.380e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   40 RISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGF---APAAL 264
            R +   I+ +GA+  + +L+VRR+P+ RF GGYW FPGG VD  + DGD     AHR  A+REL EE G    APA L
Sbjct:   22 RQAATIILLRGAAAGLEILLVRRTPQARFMGGYWVFPGGAVDAHEGDGDQ----AHRAAAVRELEEEAGISGIAPAQL 95          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: UPI00196B4508 (NUDIX domain-containing protein n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196B4508)

HSP 1 Score: 70.9 bits (172), Expect = 5.480e-13
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 PGDSVRVRAMKRVRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGFAPAALGDPDP 279
            PG ++   A    R S + I+ +G +  + +L+V+R+PE RF GG W FPGG VD  + +GD+    AHR CA+REL EE     AA+G  DP
Sbjct:    9 PGTTLNEGAPVTPRQSASVILLRGGADALELLLVQRTPEARFMGGVWVFPGGAVDAGEGEGDE----AHRVCAVRELEEE-----AAVGGVDP 92          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A538LV90_9ACTN (NUDIX hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LV90_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 1.090e-12
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 RISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGFA---PAAL 264
            R +   I+ +G +  + VL+VRRSP+ RF GG W FPGG VD  + +GDD    AHR  ALREL EE       PAAL
Sbjct:   25 RQAATVILLRGGAARLEVLLVRRSPQARFMGGVWVFPGGAVDAGEGEGDD----AHRAAALRELREEAAITLADPAAL 98          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A7W1RCZ3_9ACTN (NUDIX hydrolase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W1RCZ3_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 3.010e-12
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 RISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGFA---PAAL 264
            R + + I+ +G    + VL+VRR+P+ RF GG W FPGG VD  + DGD+    AHR  ALREL EE       PAAL
Sbjct:   25 RQAASVILLRGGGGALEVLLVRRTPQARFMGGVWVFPGGAVDAHEGDGDE----AHRTAALRELSEEAAIELDDPAAL 98          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A7K0S307_9ACTN (NUDIX domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0S307_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 6.700e-12
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   40 RISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEV---GFAPAAL 264
            R + + I+ +G S  + +L+V+R+P+ RF GG+W FPGG VD  + +GD+    AHR  A+REL EE    G APA L
Sbjct:   58 RQAASVILLRGGSEALELLLVQRTPDARFMGGFWVFPGGAVDAHEGEGDE----AHRLAAVRELDEEASVGGIAPAEL 131          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A538C1I4_9ACTN (NUDIX hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538C1I4_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   40 RISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAAHRQCALRELLEEVGF 249
            R +   I+ +G    + VL+VRR+PE RF GG W FPGG VD  + +GDD    AHR  A+REL EE   
Sbjct:   31 RQAATVILLRGGDDSLEVLLVRRTPEARFMGGAWVFPGGAVDHAEGEGDD----AHRAAAIRELREEAAI 96          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A7C8D0P4_9BACT (MBL fold metallo-hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8D0P4_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.390e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   28 MKRVRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDDDTDAA-HRQCALRELLEEVGFAPAAL 264
            + ++R S+A ++T+G   ++ V +V R+PELRFFGG+WA PGGVV+  D  G+ +       + ALREL EE G    +L
Sbjct:    3 LPKMRHSSAVLLTRGEGVELEVFLVERAPELRFFGGFWALPGGVVEGLDRRGETEIKLEISARSALRELFEETGILAGSL 82          
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Match: A0A7C1X9P9_9BACT (MBL fold metallo-hydrolase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1X9P9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 3.620e-11
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   34 RVRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDHDGDD-----DTDAAHRQCALRELLEEVGF 249
            R R + A ++T+G  R+  V +  R+PELRFFGGYWA PGG +  ED   D      D   A + CA REL EE G 
Sbjct:    2 RRRTAAALMITRGHGRERTVFLAERAPELRFFGGYWAMPGGTIGDEDLHPDGGGNPVDEATALQHCAHRELFEETGL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105153.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518EPX9_9BACT3.610e-2462.03Hydroxyacylglutathione hydrolase n=1 Tax=Planctomy... [more]
A0A6L8EJ66_9GAMM4.490e-1846.15NUDIX hydrolase n=1 Tax=Gammaproteobacteria bacter... [more]
A0A7K0QLY4_9ACTN5.380e-1448.72NUDIX domain-containing protein n=2 Tax=root TaxID... [more]
UPI00196B45085.480e-1343.01NUDIX domain-containing protein n=1 Tax=Conexibact... [more]
A0A538LV90_9ACTN1.090e-1248.72NUDIX hydrolase n=1 Tax=Actinomycetia bacterium Ta... [more]
A0A7W1RCZ3_9ACTN3.010e-1247.44NUDIX hydrolase n=1 Tax=Solirubrobacterales bacter... [more]
A0A7K0S307_9ACTN6.700e-1244.87NUDIX domain-containing protein n=2 Tax=root TaxID... [more]
A0A538C1I4_9ACTN1.380e-1147.14NUDIX hydrolase n=1 Tax=Actinomycetia bacterium Ta... [more]
A0A7C8D0P4_9BACT2.390e-1142.50MBL fold metallo-hydrolase n=1 Tax=Planctomycetes ... [more]
A0A7C1X9P9_9BACT3.620e-1145.45MBL fold metallo-hydrolase (Fragment) n=1 Tax=bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105153contigP-canaliculata_contig105153:5..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog469383.Cwoe_1558
EggNOG free text desc.NUDIX domain
EggNOG OGs2HG54@201174,4CT7E@84995,COG1051@1,COG1051@2
COG Functional cat.F
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size279
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.2652886-CDS-P-canaliculata_contig105153:4..2561622815622.2652886-CDS-P-canaliculata_contig105153:4..256Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105153 5..256 -
1693494171.4062805-CDS-P-canaliculata_contig105153:4..2561693494171.4062805-CDS-P-canaliculata_contig105153:4..256Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105153 5..256 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.2763748-UTR-P-canaliculata_contig105153:256..2831622815622.2763748-UTR-P-canaliculata_contig105153:256..283Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105153 257..283 -
1693494171.420324-UTR-P-canaliculata_contig105153:256..2831693494171.420324-UTR-P-canaliculata_contig105153:256..283Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105153 257..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105153.699.1prot_P-canaliculata_contig105153.699.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105153 5..256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105153.699.1

>prot_P-canaliculata_contig105153.699.1 ID=prot_P-canaliculata_contig105153.699.1|Name=mRNA_P-canaliculata_contig105153.699.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=84bp
MKRVRISTAAIVTKGASRDVRVLVVRRSPELRFFGGYWAFPGGVVDPEDH
DGDDDTDAAHRQCALRELLEEVGFAPAALGDPDP
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mRNA from alignment at P-canaliculata_contig105153:5..283-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105153.699.1 ID=mRNA_P-canaliculata_contig105153.699.1|Name=mRNA_P-canaliculata_contig105153.699.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at P-canaliculata_contig105153:5..283- (Pelvetia canaliculata dioecious)
CCCGGCGACTCGGTTAGAGTCCGCGCCATGAAGCGAGTCCGCATATCCAC CGCCGCAATCGTTACGAAGGGCGCCAGCCGCGACGTGCGAGTTCTCGTCG TCAGGCGCTCCCCGGAGCTACGTTTTTTTGGGGGTTACTGGGCCTTCCCA GGTGGGGTGGTCGACCCGGAGGACCACGATGGAGACGACGATACCGACGC AGCCCACCGCCAGTGCGCTCTGCGCGAGCTTCTGGAAGAGGTCGGCTTTG CTCCTGCGGCCCTCGGAGACCCCGACCCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig105153:5..283-

>mRNA_P-canaliculata_contig105153.699.1 ID=mRNA_P-canaliculata_contig105153.699.1|Name=mRNA_P-canaliculata_contig105153.699.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at P-canaliculata_contig105153:5..283- (Pelvetia canaliculata dioecious)
ATGAAGCGAGTCCGCATATCCACCGCCGCAATCGTTACGAAGGGCGCCAG
CCGCGACGTGCGAGTTCTCGTCGTCAGGCGCTCCCCGGAGCTACGTTTTT
TTGGGGGTTACTGGGCCTTCCCAGGTGGGGTGGTCGACCCGGAGGACCAC
GATGGAGACGACGATACCGACGCAGCCCACCGCCAGTGCGCTCTGCGCGA
GCTTCTGGAAGAGGTCGGCTTTGCTCCTGCGGCCCTCGGAGACCCCGACC
CGATGAAGCGAGTCCGCATATCCACCGCCGCAATCGTTACGAAGGGCGCC
AGCCGCGACGTGCGAGTTCTCGTCGTCAGGCGCTCCCCGGAGCTACGTTT
TTTTGGGGGTTACTGGGCCTTCCCAGGTGGGGTGGTCGACCCGGAGGACC
ACGATGGAGACGACGATACCGACGCAGCCCACCGCCAGTGCGCTCTGCGC
GAGCTTCTGGAAGAGGTCGGCTTTGCTCCTGCGGCCCTCGGAGACCCCGA
CCCG
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