mRNA_P-canaliculata_contig105122.695.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig105122.695.1
Unique NamemRNA_P-canaliculata_contig105122.695.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig105122.695.1 vs. uniprot
Match: A0A349FYH4_9BACT (DUF4430 domain-containing protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A349FYH4_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:  130 DLELEVGCSGDSTVFDVLQRAEKKSELEVDHSANVVQESA-SVFIKGINGVTGANGQFWTYYVNDELAKESCGTRPVKPDDKIRW 381
            D + EV     ++VF++++  E+KS      S    + S    FI  INGV GA G++W YYVND+LA        +K  D I W
Sbjct:   77 DKKYEVETREGASVFEMMKTLEEKSTPPDTFSFKYKEVSGLGSFITEINGVKGAPGEYWMYYVNDKLASIGVSQYILKEGDIISW 161
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BLAST of mRNA_P-canaliculata_contig105122.695.1 vs. uniprot
Match: A0A4Q1REF1_9FIRM (DUF4430 domain-containing protein n=1 Tax=Blautia faecicola TaxID=2509240 RepID=A0A4Q1REF1_9FIRM)

HSP 1 Score: 50.4 bits (119), Expect = 9.390e-5
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  166 TVFDVLQRAEKKSELEVDHSANVVQESASVFIKGINGV---TGANGQFWTYYVNDELAKESCGTRPVKPDDKIRWVY 387
            TVFD+L+RA +  +++++++       ++V IKGIN +   +  +   W Y VN +   + C +  +K  DKI WVY
Sbjct:   92 TVFDILKRACRYHQIQMEYNGPDTNVYSTVMIKGINYLYEFSCGDLSGWMYKVNGKFPGKGCSSYKLKDKDKIEWVY 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig105122.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A349FYH4_9BACT2.190e-536.47DUF4430 domain-containing protein n=1 Tax=Candidat... [more]
A0A4Q1REF1_9FIRM9.390e-532.47DUF4430 domain-containing protein n=1 Tax=Blautia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig105122contigP-canaliculata_contig105122:20..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size384
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.9992552-CDS-P-canaliculata_contig105122:19..4031622815621.9992552-CDS-P-canaliculata_contig105122:19..403Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105122 20..403 -
1693494171.3000667-CDS-P-canaliculata_contig105122:19..4031693494171.3000667-CDS-P-canaliculata_contig105122:19..403Pelvetia canaliculata dioeciousCDSP-canaliculata_contig105122 20..403 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.0111973-UTR-P-canaliculata_contig105122:403..4331622815622.0111973-UTR-P-canaliculata_contig105122:403..433Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105122 404..433 -
1693494171.3080335-UTR-P-canaliculata_contig105122:403..4331693494171.3080335-UTR-P-canaliculata_contig105122:403..433Pelvetia canaliculata dioeciousUTRP-canaliculata_contig105122 404..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig105122.695.1prot_P-canaliculata_contig105122.695.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig105122 20..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig105122.695.1

>prot_P-canaliculata_contig105122.695.1 ID=prot_P-canaliculata_contig105122.695.1|Name=mRNA_P-canaliculata_contig105122.695.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=128bp
MVFGCNSAVESPPKADIGTVSLVVDFPDDSQQTDLELEVGCSGDSTVFDV
LQRAEKKSELEVDHSANVVQESASVFIKGINGVTGANGQFWTYYVNDELA
KESCGTRPVKPDDKIRWVYGQPPAELK*
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mRNA from alignment at P-canaliculata_contig105122:20..433-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig105122.695.1 ID=mRNA_P-canaliculata_contig105122.695.1|Name=mRNA_P-canaliculata_contig105122.695.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at P-canaliculata_contig105122:20..433- (Pelvetia canaliculata dioecious)
GCAAGCTTGCTGGTTGTGTTTGCATTCTGCATGGTGTTTGGGTGTAACTC
AGCCGTAGAATCGCCGCCCAAAGCGGATATTGGCACCGTTTCTCTAGTGG
TCGATTTTCCTGACGATTCTCAGCAAACCGATTTAGAGCTCGAAGTAGGT
TGCTCGGGGGATTCGACAGTGTTTGACGTGCTGCAACGAGCTGAAAAAAA
ATCGGAGCTGGAAGTGGACCACAGCGCCAACGTCGTGCAAGAGTCGGCTT
CGGTTTTCATCAAAGGAATCAACGGCGTGACTGGAGCCAACGGCCAGTTT
TGGACCTACTACGTCAACGATGAATTGGCGAAAGAAAGCTGTGGCACTCG
CCCGGTCAAACCCGATGATAAAATTCGCTGGGTCTACGGACAGCCGCCAG
CTGAATTGAAATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig105122:20..433-

>mRNA_P-canaliculata_contig105122.695.1 ID=mRNA_P-canaliculata_contig105122.695.1|Name=mRNA_P-canaliculata_contig105122.695.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at P-canaliculata_contig105122:20..433- (Pelvetia canaliculata dioecious)
ATGGTGTTTGGGTGTAACTCAGCCGTAGAATCGCCGCCCAAAGCGGATAT
TGGCACCGTTTCTCTAGTGGTCGATTTTCCTGACGATTCTCAGCAAACCG
ATTTAGAGCTCGAAGTAGGTTGCTCGGGGGATTCGACAGTGTTTGACGTG
CTGCAACGAGCTGAAAAAAAATCGGAGCTGGAAGTGGACCACAGCGCCAA
CGTCGTGCAAGAGTCGGCTTCGGTTTTCATCAAAGGAATCAACGGCGTGA
CTGGAGCCAACGGCCAGTTTTGGACCTACTACGTCAACGATGAATTGGCG
AAAGAAAGCTGTGGCACTCGCCCGGTCAAACCCGATGATAAAATTCGCTG
GGTCTACGGACAGCCGCCAGCTGAATTGAAATAAATGGTGTTTGGGTGTA
ACTCAGCCGTAGAATCGCCGCCCAAAGCGGATATTGGCACCGTTTCTCTA
GTGGTCGATTTTCCTGACGATTCTCAGCAAACCGATTTAGAGCTCGAAGT
AGGTTGCTCGGGGGATTCGACAGTGTTTGACGTGCTGCAACGAGCTGAAA
AAAAATCGGAGCTGGAAGTGGACCACAGCGCCAACGTCGTGCAAGAGTCG
GCTTCGGTTTTCATCAAAGGAATCAACGGCGTGACTGGAGCCAACGGCCA
GTTTTGGACCTACTACGTCAACGATGAATTGGCGAAAGAAAGCTGTGGCA
CTCGCCCGGTCAAACCCGATGATAAAATTCGCTGGGTCTACGGACAGCCG
CCAGCTGAATTGAAATAA
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