mRNA_P-canaliculata_contig10498.674.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10498.674.1
Unique NamemRNA_P-canaliculata_contig10498.674.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10498.674.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.730e-14
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   97 EKDLASKRRAEWVHLKILQEPLLATYFRGEVSARNAYLINRLRSGRRATNKVSAILRHHNQAGGYKYRFP 306
            +KDL  ++RAEWV LK L++P LA YF+ E++ARN Y+IN+LR  RRA N V++ L+ +N+ GG KY FP
Sbjct:  482 QKDLERQKRAEWVRLKQLEDPQLAMYFKEEMTARNVYVINKLRWDRRALNNVASALKDYNRTGGRKYDFP 551
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10498.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQR2_ECTSI5.730e-1454.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10498contigP-canaliculata_contig10498:5275..6522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FQR2
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2A3HT@1,2RY5B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_000200.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size551
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10498.674.1prot_P-canaliculata_contig10498.674.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10498 5340..6522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.0189047-UTR-P-canaliculata_contig10498:5274..53391622815620.0189047-UTR-P-canaliculata_contig10498:5274..5339Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10498 5275..5339 -
1693494170.103789-UTR-P-canaliculata_contig10498:5274..53391693494170.103789-UTR-P-canaliculata_contig10498:5274..5339Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10498 5275..5339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.0318527-CDS-P-canaliculata_contig10498:5339..56551622815620.0318527-CDS-P-canaliculata_contig10498:5339..5655Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10498 5340..5655 -
1693494170.1139395-CDS-P-canaliculata_contig10498:5339..56551693494170.1139395-CDS-P-canaliculata_contig10498:5339..5655Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10498 5340..5655 -
1622815620.0447505-CDS-P-canaliculata_contig10498:6352..65221622815620.0447505-CDS-P-canaliculata_contig10498:6352..6522Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10498 6353..6522 -
1693494170.1243682-CDS-P-canaliculata_contig10498:6352..65221693494170.1243682-CDS-P-canaliculata_contig10498:6352..6522Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10498 6353..6522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10498.674.1

>prot_P-canaliculata_contig10498.674.1 ID=prot_P-canaliculata_contig10498.674.1|Name=mRNA_P-canaliculata_contig10498.674.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=162bp
TSSTGERLAAGFRHGRPLLQAREILRREDEAREKDLASKRRAEWVHLKIL
QEPLLATYFRGEVSARNAYLINRLRSGRRATNKVSAILRHHNQAGGYKYR
FPPNVRGDAFQIHFCSGEHLSTINVLCRNQHDSLVYTVYTVAVLDTIITM
IEVDLALHIQC*
back to top

mRNA from alignment at P-canaliculata_contig10498:5275..6522-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10498.674.1 ID=mRNA_P-canaliculata_contig10498.674.1|Name=mRNA_P-canaliculata_contig10498.674.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1248bp|location=Sequence derived from alignment at P-canaliculata_contig10498:5275..6522- (Pelvetia canaliculata dioecious)
ACAAGTTCTACGGGAGAACGACTAGCTGCTGGTTTCCGCCACGGACGTCC
ATTGCTGCAAGCAAGAGAAATTCTGCGGCGGGAGGACGAAGCTAGGGAGA
AGGATCTCGCAAGTAAGCGACGGGCGGAGTGGGTGCACCTCAAGATTCTC
CAAGAGCCTCTGCTGGCTACGTGAGCAAAAACATCGAACCATGTTGCAAA
GTTCGTGGACGCGTTGTGCTTATTAATAACATGATTGGTTGAGACAGCGC
GTTATCACATCAATAGTTTACCGGGGGAGATGTTAGAGCGGCCGGCGGTG
GCCGATCGCGTCAACGAGTAACAACTGTATACGTTTTCCTCTTACGGATG
TTTATCTTGAACAAGTGAAACTTAACCACTTACCAGGTAGATGAGTTGGC
GATGACAGATGGAGCGGGTATGGGTAATTTCTGACTTTTTAAAAATCGGT
TGATTCTAAACTTATAATAGTAATGTCTCGAGGGAACATTATTTGACAAA
ACTGTGACAGAAGACTTTCTATCTGGACCGAATTTTTTACAGTTGAAAAA
CAACCCTCGTCGACCAGTCAGCGTTCATAGTCCGGGTCGAGTCCGTACGT
ACTTCGTACTCGAAGCGTACGAGACAAACGTTCATAAGGAGGGAAAAGCA
GCCCTCTTTAAGTTATCAATGTTAAGAGTCTCGTTTAACCCTCCCGTGGT
ACCTGGTCCTCCGTCTTTTTCTGCACAAAAACCTTTACAAATCTTGCACC
CTCCGAGAACTCGAAGTTCTGCATCGAAATTTTGTTGACGTCATTTTGAA
CGGCCATGCCCATCCGCGATGGTTAAGGCTCGTTCGCATCAGCATATCCT
TTTTGCTCTTTCGGTAGGTACTTCCGCGGCGAAGTTAGTGCGCGGAACGC
GTACTTGATCAACAGGTTGCGCTCGGGTCGACGAGCTACCAACAAAGTCT
CGGCCATTCTGCGGCATCACAACCAAGCCGGGGGTTACAAGTACAGATTT
CCGCCGAATGTACGTGGTGATGCATTTCAGATTCACTTCTGCTCCGGAGA
GCACCTTTCAACCATAAATGTCCTGTGTCGAAACCAGCACGATTCATTGG
TGTACACGGTGTACACGGTTGCCGTTCTAGATACAATCATAACAATGATA
GAGGTAGATTTGGCGTTGCATATCCAGTGTTAGAAACGGTTGCATTTGCG
GCGGCGGTGACCCGACATCTCAGCGTTGACACATCATCGGAAGCGTTC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10498:5275..6522-

>mRNA_P-canaliculata_contig10498.674.1 ID=mRNA_P-canaliculata_contig10498.674.1|Name=mRNA_P-canaliculata_contig10498.674.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at P-canaliculata_contig10498:5275..6522- (Pelvetia canaliculata dioecious)
ACAAGTTCTACGGGAGAACGACTAGCTGCTGGTTTCCGCCACGGACGTCC
ATTGCTGCAAGCAAGAGAAATTCTGCGGCGGGAGGACGAAGCTAGGGAGA
AGGATCTCGCAAGTAAGCGACGGGCGGAGTGGGTGCACCTCAAGATTCTC
CAAGAGCCTCTGCTGGCTACACAAGTTCTACGGGAGAACGACTAGCTGCT
GGTTTCCGCCACGGACGTCCATTGCTGCAAGCAAGAGAAATTCTGCGGCG
GGAGGACGAAGCTAGGGAGAAGGATCTCGCAAGTAAGCGACGGGCGGAGT
GGGTGCACCTCAAGATTCTCCAAGAGCCTCTGCTGGCTACGTACTTCCGC
GGCGAAGTTAGTGCGCGGAACGCGTACTTGATCAACAGGTTGCGCTCGGG
TCGACGAGCTACCAACAAAGTCTCGGCCATTCTGCGGCATCACAACCAAG
CCGGGGGTTACAAGTACAGATTTCCGCCGAATGTACGTGGTGATGCATTT
CAGATTCACTTCTGCTCCGGAGAGCACCTTTCAACCATAAATGTCCTGTG
TCGAAACCAGCACGATTCATTGGTGTACACGGTGTACACGGTTGCCGTTC
TAGATACAATCATAACAATGATAGAGGTAGATTTGGCGTTGCATATCCAG
TGTTAGGTACTTCCGCGGCGAAGTTAGTGCGCGGAACGCGTACTTGATCA
ACAGGTTGCGCTCGGGTCGACGAGCTACCAACAAAGTCTCGGCCATTCTG
CGGCATCACAACCAAGCCGGGGGTTACAAGTACAGATTTCCGCCGAATGT
ACGTGGTGATGCATTTCAGATTCACTTCTGCTCCGGAGAGCACCTTTCAA
CCATAAATGTCCTGTGTCGAAACCAGCACGATTCATTGGTGTACACGGTG
TACACGGTTGCCGTTCTAGATACAATCATAACAATGATAGAGGTAGATTT
GGCGTTGCATATCCAGTGTTAG
back to top