mRNA_P-canaliculata_contig104702.648.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104702.648.1
Unique NamemRNA_P-canaliculata_contig104702.648.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig104702.648.1 vs. uniprot
Match: A0A518F0G9_9BACT (Dioxygenase n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518F0G9_9BACT)

HSP 1 Score: 238 bits (608), Expect = 1.330e-68
Identity = 123/274 (44.89%), Postives = 167/274 (60.95%), Query Frame = 1 
Query:    1 DAAGYFSIRNQAAGRYQFHATHPEHPSAELEGTTERPGQSVSDLEVVLRDGIRLLGTVAGLPQDQLRYFAVADVGKPETVSLVLKAGPETERVGEVQADGSFAIYGLEPSTKYRVLLREGRPRLWNSSDRRSQFVDVTTPAKGSAPPANMTYSTGTLLSFTAKGADGAPVIPDRIEAGFEFERAWSDIEADESTGTCILSGLWPKRDGEELILRLTAKGYEPWEAKSLVLYPGETVDLDQIWLVPRASVRVTVLDDATGEPLEGASVTMAPPKE 822
            D +GYF I  QA G Y+FH +HPEHP A L+G TER G++VSDL +V+  G  + G   G+P      FA A              GPET R   V  DG+F + GL     Y+V LR+G+ R +    RRS  V V  P +G+     + +S G  + FT    +GAP +PDRIEAGF++ +   D E DE+TG C+++GLWP+ DG+ L   L A+G++ WEAK L++YP + VDL QI L  R SVRVTV++DATG+P+EGA+VT+  P E
Sbjct:  238 DPSGYFEILRQAPGAYEFHFSHPEHPPATLKGQTERAGETVSDLRIVMDPGGVIRGAAVGVPAGTADLFAEAVPRDGADQGFRFHTGPETGRSAAVGPDGTFELRGLAAGAPYQVYLRKGQ-RTFGEGKRRSVSVAVWVPKEGTGATVQVPFSLGASVRFTVVDGNGAPHVPDRIEAGFDYPQRREDAEKDEATGRCVVTGLWPQADGQVLQFALVAQGFQKWEAKGLMIYPDDQVDLGQIVLEARPSVRVTVVEDATGKPVEGATVTLLSPPE 510
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BLAST of mRNA_P-canaliculata_contig104702.648.1 vs. uniprot
Match: A0A7Y5PZU5_9PLAN (Carboxypeptidase regulatory-like domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PZU5_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 3.820e-14
Identity = 71/255 (27.84%), Postives = 113/255 (44.31%), Query Frame = 1 
Query:   73 HPSAELEGTTERPGQSVSDLEVVLRDGIRLLGTVAGLPQDQLRYFAVADVGKPETVSLVLKAGPETE-RVGEVQADGSFAIYGLEPSTKYRVLLREGRPRLWNSSDRRSQF---VDVTTPAKGSAPPANMTYSTGTLLSFTAKGADGA-PVIPDRIEAGFE---FERAWSD--IEADESTGTCILSGLWPKRDGEELILRLTAKGYEPWEAKSLVLYPGETVDLDQIWLVPRASVRVTVLDDATGEPLEGASVTM 807
            HP+ + E T  +P +   ++ + L  G  + G   G+P++Q     V    + E  +     G E E R  ++ ADG+F + GL     Y + LR  R       D    F   +     A+       + Y   + ++FTA  A    PV   R E       FE  +     E     G   + GL P+       L++ A GY+ WE++++ L  GE +DL  I L     +RVTVLDD++G+P++GA V +
Sbjct:   89 HPNLKHELTGLKPYERRENVLLRLEPGSTIAGVAVGVPENQRGQLVVLASPRRERGADFPMPGEEEESRQAKLAADGTFLVQGLRDGKPYDLSLRRQR------GDEPVMFAARLSARVAARSGDRKVELRYLPESSIAFTAIDATTRKPVENFRAEGRMNDRFFEGGFDPGAREQKHPEGKGRVEGLRPRTPNATARLKIRAPGYQDWESENIALSEGEELDLGVIELAQAPVLRVTVLDDSSGKPVQGARVRL 337
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104702.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A518F0G9_9BACT1.330e-6844.89Dioxygenase n=1 Tax=Planctomycetes bacterium Poly3... [more]
A0A7Y5PZU5_9PLAN3.820e-1427.84Carboxypeptidase regulatory-like domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104702contigP-canaliculata_contig104702:131..958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.9486852-CDS-P-canaliculata_contig104702:130..9581622815617.9486852-CDS-P-canaliculata_contig104702:130..958Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104702 131..958 -
1693494168.8331463-CDS-P-canaliculata_contig104702:130..9581693494168.8331463-CDS-P-canaliculata_contig104702:130..958Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104702 131..958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104702.648.1prot_P-canaliculata_contig104702.648.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104702 131..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104702.648.1

>prot_P-canaliculata_contig104702.648.1 ID=prot_P-canaliculata_contig104702.648.1|Name=mRNA_P-canaliculata_contig104702.648.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=276bp
DAAGYFSIRNQAAGRYQFHATHPEHPSAELEGTTERPGQSVSDLEVVLRD
GIRLLGTVAGLPQDQLRYFAVADVGKPETVSLVLKAGPETERVGEVQADG
SFAIYGLEPSTKYRVLLREGRPRLWNSSDRRSQFVDVTTPAKGSAPPANM
TYSTGTLLSFTAKGADGAPVIPDRIEAGFEFERAWSDIEADESTGTCILS
GLWPKRDGEELILRLTAKGYEPWEAKSLVLYPGETVDLDQIWLVPRASVR
VTVLDDATGEPLEGASVTMAPPKEQG
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mRNA from alignment at P-canaliculata_contig104702:131..958-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104702.648.1 ID=mRNA_P-canaliculata_contig104702.648.1|Name=mRNA_P-canaliculata_contig104702.648.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig104702:131..958- (Pelvetia canaliculata dioecious)
GACGCCGCTGGCTACTTCTCAATACGCAATCAGGCGGCTGGTCGCTACCA
GTTCCATGCGACCCACCCCGAGCATCCCTCTGCGGAGCTAGAGGGCACGA
CGGAACGACCGGGCCAGTCGGTCTCAGATCTCGAGGTGGTTCTGCGCGAC
GGCATTCGATTGCTTGGCACCGTGGCAGGGCTACCCCAAGACCAGCTGCG
ATACTTCGCTGTCGCCGACGTCGGCAAACCGGAGACTGTGAGCCTCGTAT
TGAAAGCGGGGCCGGAAACAGAGCGCGTCGGCGAGGTTCAGGCGGATGGC
TCCTTTGCCATCTACGGGCTCGAGCCGAGTACGAAATACCGCGTGCTCCT
TAGGGAGGGCAGGCCTCGCCTATGGAACTCCTCGGACCGCCGCAGTCAGT
TCGTTGACGTCACGACACCCGCAAAAGGGAGCGCGCCTCCGGCGAATATG
ACCTACAGCACCGGCACCCTCTTGAGCTTCACGGCCAAGGGAGCGGATGG
TGCACCGGTCATTCCAGATCGGATCGAAGCGGGGTTTGAATTTGAGCGGG
CGTGGTCCGATATAGAAGCGGATGAGAGCACCGGAACCTGCATCCTCAGT
GGCCTTTGGCCCAAGCGTGATGGCGAGGAGCTGATCCTGCGCCTGACGGC
CAAGGGCTACGAGCCCTGGGAGGCGAAGAGCCTCGTGCTCTACCCCGGCG
AGACCGTCGATCTGGATCAAATCTGGCTCGTGCCGCGAGCAAGCGTCCGC
GTCACGGTTTTGGACGACGCGACGGGGGAGCCTCTTGAGGGTGCATCGGT
GACGATGGCTCCGCCGAAAGAGCAGGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig104702:131..958-

>mRNA_P-canaliculata_contig104702.648.1 ID=mRNA_P-canaliculata_contig104702.648.1|Name=mRNA_P-canaliculata_contig104702.648.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at P-canaliculata_contig104702:131..958- (Pelvetia canaliculata dioecious)
GACGCCGCTGGCTACTTCTCAATACGCAATCAGGCGGCTGGTCGCTACCA
GTTCCATGCGACCCACCCCGAGCATCCCTCTGCGGAGCTAGAGGGCACGA
CGGAACGACCGGGCCAGTCGGTCTCAGATCTCGAGGTGGTTCTGCGCGAC
GGCATTCGATTGCTTGGCACCGTGGCAGGGCTACCCCAAGACCAGCTGCG
ATACTTCGCTGTCGCCGACGTCGGCAAACCGGAGACTGTGAGCCTCGTAT
TGAAAGCGGGGCCGGAAACAGAGCGCGTCGGCGAGGTTCAGGCGGATGGC
TCCTTTGCCATCTACGGGCTCGAGCCGAGTACGAAATACCGCGTGCTCCT
TAGGGAGGGCAGGCCTCGCCTATGGAACTCCTCGGACCGCCGCAGTCAGT
TCGTTGACGTCACGACACCCGCAAAAGGGAGCGCGCCTCCGGCGAATATG
ACCTACAGCACCGGCACCCTCTTGAGCTTCACGGCCAAGGGAGCGGATGG
TGCACCGGTCATTCCAGATCGGATCGAAGCGGGGTTTGAATTTGAGCGGG
CGTGGTCCGATATAGAAGCGGATGAGAGCACCGGAACCTGCATCCTCAGT
GGCCTTTGGCCCAAGCGTGATGGCGAGGAGCTGATCCTGCGCCTGACGGC
CAAGGGCTACGAGCCCTGGGAGGCGAAGAGCCTCGTGCTCTACCCCGGCG
AGACCGTCGATCTGGATCAAATCTGGCTCGTGCCGCGAGCAAGCGTCCGC
GTCACGGTTTTGGACGACGCGACGGGGGAGCCTCTTGAGGGTGCATCGGT
GACGATGGCTCCGCCGAAAGAGCAGGGCGACGCCGCTGGCTACTTCTCAA
TACGCAATCAGGCGGCTGGTCGCTACCAGTTCCATGCGACCCACCCCGAG
CATCCCTCTGCGGAGCTAGAGGGCACGACGGAACGACCGGGCCAGTCGGT
CTCAGATCTCGAGGTGGTTCTGCGCGACGGCATTCGATTGCTTGGCACCG
TGGCAGGGCTACCCCAAGACCAGCTGCGATACTTCGCTGTCGCCGACGTC
GGCAAACCGGAGACTGTGAGCCTCGTATTGAAAGCGGGGCCGGAAACAGA
GCGCGTCGGCGAGGTTCAGGCGGATGGCTCCTTTGCCATCTACGGGCTCG
AGCCGAGTACGAAATACCGCGTGCTCCTTAGGGAGGGCAGGCCTCGCCTA
TGGAACTCCTCGGACCGCCGCAGTCAGTTCGTTGACGTCACGACACCCGC
AAAAGGGAGCGCGCCTCCGGCGAATATGACCTACAGCACCGGCACCCTCT
TGAGCTTCACGGCCAAGGGAGCGGATGGTGCACCGGTCATTCCAGATCGG
ATCGAAGCGGGGTTTGAATTTGAGCGGGCGTGGTCCGATATAGAAGCGGA
TGAGAGCACCGGAACCTGCATCCTCAGTGGCCTTTGGCCCAAGCGTGATG
GCGAGGAGCTGATCCTGCGCCTGACGGCCAAGGGCTACGAGCCCTGGGAG
GCGAAGAGCCTCGTGCTCTACCCCGGCGAGACCGTCGATCTGGATCAAAT
CTGGCTCGTGCCGCGAGCAAGCGTCCGCGTCACGGTTTTGGACGACGCGA
CGGGGGAGCCTCTTGAGGGTGCATCGGTGACGATGGCTCCGCCGAAAGAG
CAGGGC
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