mRNA_P-canaliculata_contig104602.631.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104602.631.1
Unique NamemRNA_P-canaliculata_contig104602.631.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104602.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104602contigP-canaliculata_contig104602:131..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104602.631.1prot_P-canaliculata_contig104602.631.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104602 142..399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6112487-UTR-P-canaliculata_contig104602:130..1411622815616.6112487-UTR-P-canaliculata_contig104602:130..141Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104602 131..141 +
1693494168.0453155-UTR-P-canaliculata_contig104602:130..1411693494168.0453155-UTR-P-canaliculata_contig104602:130..141Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104602 131..141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.624293-CDS-P-canaliculata_contig104602:141..2701622815616.624293-CDS-P-canaliculata_contig104602:141..270Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104602 142..270 +
1693494168.0573804-CDS-P-canaliculata_contig104602:141..2701693494168.0573804-CDS-P-canaliculata_contig104602:141..270Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104602 142..270 +
1622815616.6375556-CDS-P-canaliculata_contig104602:279..3991622815616.6375556-CDS-P-canaliculata_contig104602:279..399Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104602 280..399 +
1693494168.0672255-CDS-P-canaliculata_contig104602:279..3991693494168.0672255-CDS-P-canaliculata_contig104602:279..399Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104602 280..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104602.631.1

>prot_P-canaliculata_contig104602.631.1 ID=prot_P-canaliculata_contig104602.631.1|Name=mRNA_P-canaliculata_contig104602.631.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=83bp
MRLYKQWHRPIQTVHQTSLLHIESSLDLLDCCRLPTTSVLSNKRTNTFQP
VLINKSKFLKATPYKIRKIEIPRSMVVEALSW*
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mRNA from alignment at P-canaliculata_contig104602:131..399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104602.631.1 ID=mRNA_P-canaliculata_contig104602.631.1|Name=mRNA_P-canaliculata_contig104602.631.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=269bp|location=Sequence derived from alignment at P-canaliculata_contig104602:131..399+ (Pelvetia canaliculata dioecious)
CGACAAAAAGTATGCGACTCTACAAGCAATGGCACCGACCAATACAAACG
GTTCATCAAACCTCCTTACTCCATATCGAGAGCAGCCTCGATTTACTCGA
TTGTTGCCGCCTACCCACGACCAGCGTTCTCAGCAACAAAGCGACAAAGC
GGACAAATACGTTCCAACCAGTTTTGATCAACAAGTCCAAGTTTCTCAAG
GCCACACCGTACAAAATAAGGAAAATTGAGATACCGAGGTCCATGGTGGT
GGAGGCCTTGAGCTGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104602:131..399+

>mRNA_P-canaliculata_contig104602.631.1 ID=mRNA_P-canaliculata_contig104602.631.1|Name=mRNA_P-canaliculata_contig104602.631.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at P-canaliculata_contig104602:131..399+ (Pelvetia canaliculata dioecious)
ATGCGACTCTACAAGCAATGGCACCGACCAATACAAACGGTTCATCAAAC
CTCCTTACTCCATATCGAGAGCAGCCTCGATTTACTCGATTGTTGCCGCC
TACCCACGACCAGCGTTCTCAGCAACAAAATGCGACTCTACAAGCAATGG
CACCGACCAATACAAACGGTTCATCAAACCTCCTTACTCCATATCGAGAG
CAGCCTCGATTTACTCGATTGTTGCCGCCTACCCACGACCAGCGTTCTCA
GCAACAAACGGACAAATACGTTCCAACCAGTTTTGATCAACAAGTCCAAG
TTTCTCAAGGCCACACCGTACAAAATAAGGAAAATTGAGATACCGAGGTC
CATGGTGGTGGAGGCCTTGAGCTGGTGACGGACAAATACGTTCCAACCAG
TTTTGATCAACAAGTCCAAGTTTCTCAAGGCCACACCGTACAAAATAAGG
AAAATTGAGATACCGAGGTCCATGGTGGTGGAGGCCTTGAGCTGGTGA
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