mRNA_P-canaliculata_contig104576.622.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104576.622.1
Unique NamemRNA_P-canaliculata_contig104576.622.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: UPI0016758414 (peptide chain release factor 3 n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016758414)

HSP 1 Score: 499 bits (1284), Expect = 6.380e-174
Identity = 248/264 (93.94%), Postives = 257/264 (97.35%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MSKA+E+EP RRRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTF+IIAEIQDKLALDVVPMQWPAASGRRFKGV DLRT  FLHFVKPEDGGEHVMT+VDGNSI  MF+NDDL +EF+EEQELA+EYPDFNEQSFREGHMTPVYFGSALRKFGVLEL
Sbjct:    1 MSKAIEIEPKRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFEIIAEIQDKLALDVVPMQWPAASGRRFKGVADLRTGAFLHFVKPEDGGEHVMTQVDGNSIQAMFNNDDLFDEFMEEQELAKEYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 264          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: UPI00041CF647 (peptide chain release factor 3 n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041CF647)

HSP 1 Score: 460 bits (1183), Expect = 1.360e-158
Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MSKALE+EP +RRVFAIISHPDAGKTTLTENMLLA+GAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEHK+LIFNLLDTPGHEDFSEDTYRTLTAADCAVMV+D AKGIEPQTLKLFEVCRLRDIPIITFVNKLDRE RDTF+IIAEI+DKLALDVVPMQWPAASGRRF+GV DLRT  FL F K + G  H  T +DGNSIG  FD+ DLL EF EEQELA+EYPDFN QSFREGHMTPVYFGSALRKFGVLEL
Sbjct:    1 MSKALEIEPNKRRVFAIISHPDAGKTTLTENMLLASGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKELIFNLLDTPGHEDFSEDTYRTLTAADCAVMVIDAAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREARDTFEIIAEIEDKLALDVVPMQWPAASGRRFRGVSDLRTGQFLKFAKADSGDAHEWTPMDGNSIGAHFDDTDLLEEFSEEQELAKEYPDFNVQSFREGHMTPVYFGSALRKFGVLEL 264          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A420WKV4_9PROT (Peptide chain release factor 3 n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WKV4_9PROT)

HSP 1 Score: 454 bits (1167), Expect = 4.130e-156
Identity = 226/264 (85.61%), Postives = 241/264 (91.29%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MS AL+ EP +RRVFAIISHPDAGKTTLTENMLLA+GAIH AG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEH DLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITF+NKLDREG D F++I+EIQDKLALDV+PMQWPAASGRRFKG+ DLRT  FL FVKP+D GEH +T VDG  I   FD+DDLL EFLEEQELA+EY +FN QSFREGHMTPVYFGSALRKFGV EL
Sbjct:    5 MSNALQTEPGKRRVFAIISHPDAGKTTLTENMLLASGAIHAAGQVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHADLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFINKLDREGHDPFELISEIQDKLALDVIPMQWPAASGRRFKGISDLRTGQFLRFVKPDDDGEHSLTPVDGTDIVDHFDDDDLLEEFLEEQELAKEYGEFNAQSFREGHMTPVYFGSALRKFGVREL 268          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A8J3CNC8_9PROT (Peptide chain release factor 3 n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CNC8_9PROT)

HSP 1 Score: 449 bits (1155), Expect = 2.390e-154
Identity = 226/264 (85.61%), Postives = 241/264 (91.29%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MSKAL+ EP+ RRVFAIISHPDAGKTTLTENMLLA+GAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEH+ L FNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPI+TF+NKLDREG D FD+I+EI+DKLALDVVPMQWPAASGRRFKGVVDLRT  FL F KPE G +H    V G+SI   F++D LL+EF EE ELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL
Sbjct:    1 MSKALQTEPLTRRVFAIISHPDAGKTTLTENMLLASGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHRGLTFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIVTFINKLDREGVDPFDLISEIEDKLALDVVPMQWPAASGRRFKGVVDLRTQKFLAFEKPESGKDHSWMPVGGDSITTHFNDDALLDEFREEAELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 264          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A848V448_9PROT (Peptide chain release factor 3 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V448_9PROT)

HSP 1 Score: 419 bits (1076), Expect = 2.460e-142
Identity = 213/268 (79.48%), Postives = 239/268 (89.18%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVM----TKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MSKA  +E  RRRVFAIISHPDAGKTTLTENML +AGAIH AG+VAARG+ARRTQSDWMKIEQERGISVSSSVMTFEH DLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREG++TFD+++EI+DKLALDV PMQWPAASGRRF+GV DLRT++FL +++P++GG+  M      ++G +I   F++DDLL EF EE ELA+EY  FN QSFREGHMTPVYFGSALR+FGV EL
Sbjct:    1 MSKAA-IEAPRRRVFAIISHPDAGKTTLTENMLYSAGAIHLAGQVAARGQARRTQSDWMKIEQERGISVSSSVMTFEHSDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGQETFDLLSEIEDKLALDVRPMQWPAASGRRFRGVADLRTNEFLKYIRPDEGGDAGMGAERIPMEGEAITAHFNDDDLLLEFQEEVELAKEYGGFNVQSFREGHMTPVYFGSALRRFGVREL 267          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A7Y1SNL1_9PROT (Peptide chain release factor 3 n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7Y1SNL1_9PROT)

HSP 1 Score: 407 bits (1047), Expect = 5.160e-138
Identity = 205/264 (77.65%), Postives = 226/264 (85.61%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            M+K L L+  RRRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARG  RRTQSDWMKIEQERGISVSSSVMTFEH+DLIFNLLDTPGHEDFSEDTYRTLTAAD A+MVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FDI++EI+DKLALDV+PMQWP ASG+RFKG+VDLRTD F+ F    DG          + +     +DDL +EF EE ELA+EY +FNEQSFREGHMTPVYFGSALRKFGVL+L
Sbjct:    1 MNKPLNLQSTRRRVFAIISHPDAGKTTLTENMLYAAGAIHQAGQVAARGARRRTQSDWMKIEQERGISVSSSVMTFEHQDLIFNLLDTPGHEDFSEDTYRTLTAADSAIMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDMFDILSEIEDKLALDVIPMQWPCASGKRFKGIVDLRTDQFVPFAA--DGEHPAPVDFASDEMNAHIGDDDLTSEFSEEMELAKEYGEFNEQSFREGHMTPVYFGSALRKFGVLQL 262          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2J7M6_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J7M6_9PROT)

HSP 1 Score: 400 bits (1028), Expect = 3.880e-135
Identity = 205/264 (77.65%), Postives = 226/264 (85.61%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MS   + +  RRRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARG+ RRTQSDWMKIEQERGISVSSSVMTFEH DL+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FD+++EI+DKLALDVVPMQWP ASGRRF+G+ DLRT+ FL F    + GE V  ++ G+++    D+ DL  EF EE ELAREY  F  QSF EGHMTPVYFGSALRKFGVLEL
Sbjct:    1 MSNPSQSQSERRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGQVAARGQRRRTQSDWMKIEQERGISVSSSVMTFEHCDLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDIFDLLSEIEDKLALDVVPMQWPCASGRRFRGIADLRTNQFLPFSANGEHGESV--ELGGSAMDKFIDDVDLSLEFCEEAELAREYGPFKLQSFLEGHMTPVYFGSALRKFGVLEL 262          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2N447_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N447_9PROT)

HSP 1 Score: 399 bits (1024), Expect = 1.560e-134
Identity = 206/265 (77.74%), Postives = 225/265 (84.91%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKV-DGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            M K  E    +RRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARG+ RRTQSDWMKIEQERGISVSSSVMTFEH+ L+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITFVNK DRE RD F+ +AEI+DKLALDVVPMQWP ASGRRF+G+ DL  + FL F  P+  GEH    V D   +  + D+DDL++EF EE ELAREY +F EQSF EGHMTPVYFGSALRKFGVL+L
Sbjct:    1 MIKNSEHPSSKRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGQVAARGQRRRTQSDWMKIEQERGISVSSSVMTFEHRGLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFVNKFDREARDVFETLAEIEDKLALDVVPMQWPCASGRRFRGIADLSDNTFLPF-SPD--GEHGTAVVFDSAEMSALIDDDDLVSEFSEEVELAREYGEFKEQSFLEGHMTPVYFGSALRKFGVLQL 262          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2GDC1_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GDC1_9PROT)

HSP 1 Score: 396 bits (1017), Expect = 1.790e-133
Identity = 200/264 (75.76%), Postives = 222/264 (84.09%), Query Frame = 1
Query:    1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            MS   + +   RRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARGE RRTQSDWMKIEQERGISVSSSVMTFEH  L+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FD+IAE++DKLALDVVPMQWP ASGRRF+G+ DLRT+ F+ F    + GE  +  +D   +    D++D+  EF EE ELAREY +F  QSF EGHMTPVYFGSAL+KFGVLEL
Sbjct:    1 MSNPAQNQSESRRVFAIISHPDAGKTTLTENMLFAAGAIHQAGQVAARGERRRTQSDWMKIEQERGISVSSSVMTFEHSGLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDVFDLIAEVEDKLALDVVPMQWPCASGRRFRGLADLRTNAFIPFKTNGEHGE--IMAMDSPEMAAFIDDEDIAQEFSEEAELAREYGEFKLQSFLEGHMTPVYFGSALKKFGVLEL 262          
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A7C5QVG9_9PROT (GTP-binding protein (Fragment) n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5QVG9_9PROT)

HSP 1 Score: 386 bits (992), Expect = 1.260e-132
Identity = 201/255 (78.82%), Postives = 217/255 (85.10%), Query Frame = 1
Query:   34 RRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHV--MTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
            RRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARGE RRTQSDWMKIEQERGISVSSSVMTFEHK LIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NK DRE  D F+II+EI+DKLALDVVPMQWP ASGRRFKGV++  TD F+ F  P+  GEH   +   D  ++     +D+LL E+ EE ELAREY  F E SF EGHMTPVYFGSALRKFGVL+L
Sbjct:   12 RRVFAIISHPDAGKTTLTENMLFAAGAIHQAGQVAARGERRRTQSDWMKIEQERGISVSSSVMTFEHKGLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKYDREALDVFEIISEIEDKLALDVVPMQWPFASGRRFKGVLEFATDTFIPF-SPD--GEHPQPIDFADKQALKAFMKDDELLEEYSEEAELAREYGPFVETSFLEGHMTPVYFGSALRKFGVLQL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167584146.380e-17493.94peptide chain release factor 3 n=1 Tax=Litorimonas... [more]
UPI00041CF6471.360e-15887.12peptide chain release factor 3 n=1 Tax=Hellea baln... [more]
A0A420WKV4_9PROT4.130e-15685.61Peptide chain release factor 3 n=1 Tax=Litorimonas... [more]
A0A8J3CNC8_9PROT2.390e-15485.61Peptide chain release factor 3 n=1 Tax=Algimonas a... [more]
A0A848V448_9PROT2.460e-14279.48Peptide chain release factor 3 n=1 Tax=Hellea sp. ... [more]
A0A7Y1SNL1_9PROT5.160e-13877.65Peptide chain release factor 3 n=1 Tax=Hyphomonada... [more]
A0A2G2J7M6_9PROT3.880e-13577.65Peptide chain release factor 3 n=1 Tax=Robiginitom... [more]
A0A2G2N447_9PROT1.560e-13477.74Peptide chain release factor 3 n=1 Tax=Robiginitom... [more]
A0A2G2GDC1_9PROT1.790e-13375.76Peptide chain release factor 3 n=1 Tax=Robiginitom... [more]
A0A7C5QVG9_9PROT1.260e-13278.82GTP-binding protein (Fragment) n=1 Tax=Hellea baln... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104576contigP-canaliculata_contig104576:1..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score462.2
Seed ortholog evalue1.6e-127
Seed eggNOG ortholog1121948.AUAC01000002_gene1307
Preferred nameprfC
KEGG koko:K02837,ko:K07133
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
EggNOG OGs1MU7X@1224,2TRP5@28211,43WSS@69657,COG4108@1,COG4108@2
COG Functional cat.J
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons1
Model size792
Cds size792
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0969658-CDS-P-canaliculata_contig104576:0..7921622815616.0969658-CDS-P-canaliculata_contig104576:0..792Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104576 1..792 -
1693494167.819449-CDS-P-canaliculata_contig104576:0..7921693494167.819449-CDS-P-canaliculata_contig104576:0..792Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104576 1..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104576.622.1prot_P-canaliculata_contig104576.622.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104576 1..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104576.622.1

>prot_P-canaliculata_contig104576.622.1 ID=prot_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=264bp
MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGE
ARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYR
TLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDT
FDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGE
HVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPV
YFGSALRKFGVLEL
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mRNA from alignment at P-canaliculata_contig104576:1..792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104576.622.1 ID=mRNA_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at P-canaliculata_contig104576:1..792- (Pelvetia canaliculata dioecious)
ATGTCTAAAGCCCTCGAACTCGAACCCATGCGCCGCCGCGTTTTTGCGAT CATCTCTCATCCTGATGCGGGTAAGACGACGCTGACGGAGAACATGTTGC TGGCCGCGGGCGCTATCCACCAAGCGGGCCGCGTCGCCGCGCGGGGCGAA GCGCGGCGGACGCAATCGGATTGGATGAAGATCGAGCAAGAGCGCGGCAT CTCCGTTTCCTCCTCCGTCATGACGTTTGAGCATAAGGACCTCATCTTTA ACCTGCTCGACACGCCGGGCCATGAGGATTTCTCCGAAGATACCTACCGC ACCCTCACCGCCGCCGATTGCGCCGTTATGGTGCTCGATGTGGCCAAGGG TATTGAGCCGCAAACCTTGAAGCTCTTCGAGGTGTGCCGCCTGCGAGATA TTCCGATTATTACCTTCGTCAATAAGCTGGACCGCGAGGGCCGCGACACC TTCGATATCATCGCCGAGATCCAAGATAAACTCGCGCTCGACGTCGTGCC GATGCAATGGCCCGCCGCCTCCGGCCGCCGGTTCAAAGGCGTCGTCGATT TGCGCACCGATGACTTCCTCCACTTCGTCAAACCCGAGGACGGCGGCGAG CACGTCATGACCAAGGTCGACGGTAATTCCATCGGCGGCATGTTTGACAA TGACGATCTGCTCAATGAGTTTCTGGAAGAGCAGGAACTCGCCCGAGAAT ATCCTGACTTTAACGAACAGAGCTTTCGCGAGGGCCATATGACGCCCGTT TATTTCGGCTCCGCCCTGCGGAAATTTGGCGTGCTGGAACTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig104576:1..792-

>mRNA_P-canaliculata_contig104576.622.1 ID=mRNA_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at P-canaliculata_contig104576:1..792- (Pelvetia canaliculata dioecious)
ATGTCTAAAGCCCTCGAACTCGAACCCATGCGCCGCCGCGTTTTTGCGAT
CATCTCTCATCCTGATGCGGGTAAGACGACGCTGACGGAGAACATGTTGC
TGGCCGCGGGCGCTATCCACCAAGCGGGCCGCGTCGCCGCGCGGGGCGAA
GCGCGGCGGACGCAATCGGATTGGATGAAGATCGAGCAAGAGCGCGGCAT
CTCCGTTTCCTCCTCCGTCATGACGTTTGAGCATAAGGACCTCATCTTTA
ACCTGCTCGACACGCCGGGCCATGAGGATTTCTCCGAAGATACCTACCGC
ACCCTCACCGCCGCCGATTGCGCCGTTATGGTGCTCGATGTGGCCAAGGG
TATTGAGCCGCAAACCTTGAAGCTCTTCGAGGTGTGCCGCCTGCGAGATA
TTCCGATTATTACCTTCGTCAATAAGCTGGACCGCGAGGGCCGCGACACC
TTCGATATCATCGCCGAGATCCAAGATAAACTCGCGCTCGACGTCGTGCC
GATGCAATGGCCCGCCGCCTCCGGCCGCCGGTTCAAAGGCGTCGTCGATT
TGCGCACCGATGACTTCCTCCACTTCGTCAAACCCGAGGACGGCGGCGAG
CACGTCATGACCAAGGTCGACGGTAATTCCATCGGCGGCATGTTTGACAA
TGACGATCTGCTCAATGAGTTTCTGGAAGAGCAGGAACTCGCCCGAGAAT
ATCCTGACTTTAACGAACAGAGCTTTCGCGAGGGCCATATGACGCCCGTT
TATTTCGGCTCCGCCCTGCGGAAATTTGGCGTGCTGGAACTCATGTCTAA
AGCCCTCGAACTCGAACCCATGCGCCGCCGCGTTTTTGCGATCATCTCTC
ATCCTGATGCGGGTAAGACGACGCTGACGGAGAACATGTTGCTGGCCGCG
GGCGCTATCCACCAAGCGGGCCGCGTCGCCGCGCGGGGCGAAGCGCGGCG
GACGCAATCGGATTGGATGAAGATCGAGCAAGAGCGCGGCATCTCCGTTT
CCTCCTCCGTCATGACGTTTGAGCATAAGGACCTCATCTTTAACCTGCTC
GACACGCCGGGCCATGAGGATTTCTCCGAAGATACCTACCGCACCCTCAC
CGCCGCCGATTGCGCCGTTATGGTGCTCGATGTGGCCAAGGGTATTGAGC
CGCAAACCTTGAAGCTCTTCGAGGTGTGCCGCCTGCGAGATATTCCGATT
ATTACCTTCGTCAATAAGCTGGACCGCGAGGGCCGCGACACCTTCGATAT
CATCGCCGAGATCCAAGATAAACTCGCGCTCGACGTCGTGCCGATGCAAT
GGCCCGCCGCCTCCGGCCGCCGGTTCAAAGGCGTCGTCGATTTGCGCACC
GATGACTTCCTCCACTTCGTCAAACCCGAGGACGGCGGCGAGCACGTCAT
GACCAAGGTCGACGGTAATTCCATCGGCGGCATGTTTGACAATGACGATC
TGCTCAATGAGTTTCTGGAAGAGCAGGAACTCGCCCGAGAATATCCTGAC
TTTAACGAACAGAGCTTTCGCGAGGGCCATATGACGCCCGTTTATTTCGG
CTCCGCCCTGCGGAAATTTGGCGTGCTGGAACTC
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