mRNA_P-canaliculata_contig104576.622.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: UPI0016758414 (peptide chain release factor 3 n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016758414) HSP 1 Score: 499 bits (1284), Expect = 6.380e-174 Identity = 248/264 (93.94%), Postives = 257/264 (97.35%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MSKA+E+EP RRRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTF+IIAEIQDKLALDVVPMQWPAASGRRFKGV DLRT FLHFVKPEDGGEHVMT+VDGNSI MF+NDDL +EF+EEQELA+EYPDFNEQSFREGHMTPVYFGSALRKFGVLEL
Sbjct: 1 MSKAIEIEPKRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFEIIAEIQDKLALDVVPMQWPAASGRRFKGVADLRTGAFLHFVKPEDGGEHVMTQVDGNSIQAMFNNDDLFDEFMEEQELAKEYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 264
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: UPI00041CF647 (peptide chain release factor 3 n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041CF647) HSP 1 Score: 460 bits (1183), Expect = 1.360e-158 Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MSKALE+EP +RRVFAIISHPDAGKTTLTENMLLA+GAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEHK+LIFNLLDTPGHEDFSEDTYRTLTAADCAVMV+D AKGIEPQTLKLFEVCRLRDIPIITFVNKLDRE RDTF+IIAEI+DKLALDVVPMQWPAASGRRF+GV DLRT FL F K + G H T +DGNSIG FD+ DLL EF EEQELA+EYPDFN QSFREGHMTPVYFGSALRKFGVLEL
Sbjct: 1 MSKALEIEPNKRRVFAIISHPDAGKTTLTENMLLASGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKELIFNLLDTPGHEDFSEDTYRTLTAADCAVMVIDAAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREARDTFEIIAEIEDKLALDVVPMQWPAASGRRFRGVSDLRTGQFLKFAKADSGDAHEWTPMDGNSIGAHFDDTDLLEEFSEEQELAKEYPDFNVQSFREGHMTPVYFGSALRKFGVLEL 264
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A420WKV4_9PROT (Peptide chain release factor 3 n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WKV4_9PROT) HSP 1 Score: 454 bits (1167), Expect = 4.130e-156 Identity = 226/264 (85.61%), Postives = 241/264 (91.29%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MS AL+ EP +RRVFAIISHPDAGKTTLTENMLLA+GAIH AG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEH DLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITF+NKLDREG D F++I+EIQDKLALDV+PMQWPAASGRRFKG+ DLRT FL FVKP+D GEH +T VDG I FD+DDLL EFLEEQELA+EY +FN QSFREGHMTPVYFGSALRKFGV EL
Sbjct: 5 MSNALQTEPGKRRVFAIISHPDAGKTTLTENMLLASGAIHAAGQVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHADLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFINKLDREGHDPFELISEIQDKLALDVIPMQWPAASGRRFKGISDLRTGQFLRFVKPDDDGEHSLTPVDGTDIVDHFDDDDLLEEFLEEQELAKEYGEFNAQSFREGHMTPVYFGSALRKFGVREL 268
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A8J3CNC8_9PROT (Peptide chain release factor 3 n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CNC8_9PROT) HSP 1 Score: 449 bits (1155), Expect = 2.390e-154 Identity = 226/264 (85.61%), Postives = 241/264 (91.29%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MSKAL+ EP+ RRVFAIISHPDAGKTTLTENMLLA+GAIHQAG+VAARGEARRTQSDWMKIEQERGISVSSSVMTFEH+ L FNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPI+TF+NKLDREG D FD+I+EI+DKLALDVVPMQWPAASGRRFKGVVDLRT FL F KPE G +H V G+SI F++D LL+EF EE ELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL
Sbjct: 1 MSKALQTEPLTRRVFAIISHPDAGKTTLTENMLLASGAIHQAGKVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHRGLTFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIVTFINKLDREGVDPFDLISEIEDKLALDVVPMQWPAASGRRFKGVVDLRTQKFLAFEKPESGKDHSWMPVGGDSITTHFNDDALLDEFREEAELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 264
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A848V448_9PROT (Peptide chain release factor 3 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V448_9PROT) HSP 1 Score: 419 bits (1076), Expect = 2.460e-142 Identity = 213/268 (79.48%), Postives = 239/268 (89.18%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVM----TKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MSKA +E RRRVFAIISHPDAGKTTLTENML +AGAIH AG+VAARG+ARRTQSDWMKIEQERGISVSSSVMTFEH DLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREG++TFD+++EI+DKLALDV PMQWPAASGRRF+GV DLRT++FL +++P++GG+ M ++G +I F++DDLL EF EE ELA+EY FN QSFREGHMTPVYFGSALR+FGV EL
Sbjct: 1 MSKAA-IEAPRRRVFAIISHPDAGKTTLTENMLYSAGAIHLAGQVAARGQARRTQSDWMKIEQERGISVSSSVMTFEHSDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGQETFDLLSEIEDKLALDVRPMQWPAASGRRFRGVADLRTNEFLKYIRPDEGGDAGMGAERIPMEGEAITAHFNDDDLLLEFQEEVELAKEYGGFNVQSFREGHMTPVYFGSALRRFGVREL 267
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A7Y1SNL1_9PROT (Peptide chain release factor 3 n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7Y1SNL1_9PROT) HSP 1 Score: 407 bits (1047), Expect = 5.160e-138 Identity = 205/264 (77.65%), Postives = 226/264 (85.61%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
M+K L L+ RRRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARG RRTQSDWMKIEQERGISVSSSVMTFEH+DLIFNLLDTPGHEDFSEDTYRTLTAAD A+MVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FDI++EI+DKLALDV+PMQWP ASG+RFKG+VDLRTD F+ F DG + + +DDL +EF EE ELA+EY +FNEQSFREGHMTPVYFGSALRKFGVL+L
Sbjct: 1 MNKPLNLQSTRRRVFAIISHPDAGKTTLTENMLYAAGAIHQAGQVAARGARRRTQSDWMKIEQERGISVSSSVMTFEHQDLIFNLLDTPGHEDFSEDTYRTLTAADSAIMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDMFDILSEIEDKLALDVIPMQWPCASGKRFKGIVDLRTDQFVPFAA--DGEHPAPVDFASDEMNAHIGDDDLTSEFSEEMELAKEYGEFNEQSFREGHMTPVYFGSALRKFGVLQL 262
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2J7M6_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J7M6_9PROT) HSP 1 Score: 400 bits (1028), Expect = 3.880e-135 Identity = 205/264 (77.65%), Postives = 226/264 (85.61%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MS + + RRRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARG+ RRTQSDWMKIEQERGISVSSSVMTFEH DL+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FD+++EI+DKLALDVVPMQWP ASGRRF+G+ DLRT+ FL F + GE V ++ G+++ D+ DL EF EE ELAREY F QSF EGHMTPVYFGSALRKFGVLEL
Sbjct: 1 MSNPSQSQSERRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGQVAARGQRRRTQSDWMKIEQERGISVSSSVMTFEHCDLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDIFDLLSEIEDKLALDVVPMQWPCASGRRFRGIADLRTNQFLPFSANGEHGESV--ELGGSAMDKFIDDVDLSLEFCEEAELAREYGPFKLQSFLEGHMTPVYFGSALRKFGVLEL 262
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2N447_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N447_9PROT) HSP 1 Score: 399 bits (1024), Expect = 1.560e-134 Identity = 206/265 (77.74%), Postives = 225/265 (84.91%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKV-DGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
M K E +RRVFAIISHPDAGKTTLTENMLLAAGAIHQAG+VAARG+ RRTQSDWMKIEQERGISVSSSVMTFEH+ L+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITFVNK DRE RD F+ +AEI+DKLALDVVPMQWP ASGRRF+G+ DL + FL F P+ GEH V D + + D+DDL++EF EE ELAREY +F EQSF EGHMTPVYFGSALRKFGVL+L
Sbjct: 1 MIKNSEHPSSKRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGQVAARGQRRRTQSDWMKIEQERGISVSSSVMTFEHRGLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFVNKFDREARDVFETLAEIEDKLALDVVPMQWPCASGRRFRGIADLSDNTFLPF-SPD--GEHGTAVVFDSAEMSALIDDDDLVSEFSEEVELAREYGEFKEQSFLEGHMTPVYFGSALRKFGVLQL 262
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A2G2GDC1_9PROT (Peptide chain release factor 3 n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GDC1_9PROT) HSP 1 Score: 396 bits (1017), Expect = 1.790e-133 Identity = 200/264 (75.76%), Postives = 222/264 (84.09%), Query Frame = 1
Query: 1 MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHVMTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
MS + + RRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARGE RRTQSDWMKIEQERGISVSSSVMTFEH L+FNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NKLDRE +D FD+IAE++DKLALDVVPMQWP ASGRRF+G+ DLRT+ F+ F + GE + +D + D++D+ EF EE ELAREY +F QSF EGHMTPVYFGSAL+KFGVLEL
Sbjct: 1 MSNPAQNQSESRRVFAIISHPDAGKTTLTENMLFAAGAIHQAGQVAARGERRRTQSDWMKIEQERGISVSSSVMTFEHSGLVFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKLDREAQDVFDLIAEVEDKLALDVVPMQWPCASGRRFRGLADLRTNAFIPFKTNGEHGE--IMAMDSPEMAAFIDDEDIAQEFSEEAELAREYGEFKLQSFLEGHMTPVYFGSALKKFGVLEL 262
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Match: A0A7C5QVG9_9PROT (GTP-binding protein (Fragment) n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5QVG9_9PROT) HSP 1 Score: 386 bits (992), Expect = 1.260e-132 Identity = 201/255 (78.82%), Postives = 217/255 (85.10%), Query Frame = 1
Query: 34 RRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEARRTQSDWMKIEQERGISVSSSVMTFEHKDLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDVAKGIEPQTLKLFEVCRLRDIPIITFVNKLDREGRDTFDIIAEIQDKLALDVVPMQWPAASGRRFKGVVDLRTDDFLHFVKPEDGGEHV--MTKVDGNSIGGMFDNDDLLNEFLEEQELAREYPDFNEQSFREGHMTPVYFGSALRKFGVLEL 792
RRVFAIISHPDAGKTTLTENML AAGAIHQAG+VAARGE RRTQSDWMKIEQERGISVSSSVMTFEHK LIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLD AKGIEPQTLKLFEVCRLRDIPIITF+NK DRE D F+II+EI+DKLALDVVPMQWP ASGRRFKGV++ TD F+ F P+ GEH + D ++ +D+LL E+ EE ELAREY F E SF EGHMTPVYFGSALRKFGVL+L
Sbjct: 12 RRVFAIISHPDAGKTTLTENMLFAAGAIHQAGQVAARGERRRTQSDWMKIEQERGISVSSSVMTFEHKGLIFNLLDTPGHEDFSEDTYRTLTAADCAVMVLDAAKGIEPQTLKLFEVCRLRDIPIITFINKYDREALDVFEIISEIEDKLALDVVPMQWPFASGRRFKGVLEFATDTFIPF-SPD--GEHPQPIDFADKQALKAFMKDDELLEEYSEEAELAREYGPFVETSFLEGHMTPVYFGSALRKFGVLQL 263 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104576.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104576.622.1 >prot_P-canaliculata_contig104576.622.1 ID=prot_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=264bp MSKALELEPMRRRVFAIISHPDAGKTTLTENMLLAAGAIHQAGRVAARGEback to top mRNA from alignment at P-canaliculata_contig104576:1..792- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104576.622.1 ID=mRNA_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at P-canaliculata_contig104576:1..792- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104576:1..792- >mRNA_P-canaliculata_contig104576.622.1 ID=mRNA_P-canaliculata_contig104576.622.1|Name=mRNA_P-canaliculata_contig104576.622.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at P-canaliculata_contig104576:1..792- (Pelvetia canaliculata dioecious)back to top |