mRNA_P-canaliculata_contig104463.614.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104463.614.1
Unique NamemRNA_P-canaliculata_contig104463.614.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig104463.614.1 vs. uniprot
Match: A0A3T0RQX9_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrio sp. qaytius TaxID=1916293 RepID=A0A3T0RQX9_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 7.120e-8
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   10 IVRLGDIAQVVDPSKKDSRWPGRVDLQARGD--GVSSRYKRLVYPGILFGH-GHAQEKREFIVDPLGMVRYGVTDWLTIETTPIYYLAERFNLGATFRA 297
            +++ GDI + +D +  +  + G  DL  +     +SS+Y+ LVY GI  G       K EF+++ LG V YG TDWLT+ T     L +R N  A F+A
Sbjct:  106 LIQKGDIIKKLDMTSYNEEFIGTTDLIVKKSELNISSKYRPLVYQGISIGETAQTLYKNEFLINYLGNVFYGATDWLTLGTFAPGNLIDRPN--ANFKA 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104463.614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3T0RQX9_9PROT7.120e-836.36Uncharacterized protein n=1 Tax=Bdellovibrio sp. q... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104463contigP-canaliculata_contig104463:544..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.297922-CDS-P-canaliculata_contig104463:543..8461622815615.297922-CDS-P-canaliculata_contig104463:543..846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104463 544..846 +
1693494167.3903997-CDS-P-canaliculata_contig104463:543..8461693494167.3903997-CDS-P-canaliculata_contig104463:543..846Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104463 544..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104463.614.1prot_P-canaliculata_contig104463.614.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104463 544..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104463.614.1

>prot_P-canaliculata_contig104463.614.1 ID=prot_P-canaliculata_contig104463.614.1|Name=mRNA_P-canaliculata_contig104463.614.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
QNQIVRLGDIAQVVDPSKKDSRWPGRVDLQARGDGVSSRYKRLVYPGILF
GHGHAQEKREFIVDPLGMVRYGVTDWLTIETTPIYYLAERFNLGATFRAI
D
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mRNA from alignment at P-canaliculata_contig104463:544..846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104463.614.1 ID=mRNA_P-canaliculata_contig104463.614.1|Name=mRNA_P-canaliculata_contig104463.614.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at P-canaliculata_contig104463:544..846+ (Pelvetia canaliculata dioecious)
CAAAATCAAATTGTACGACTAGGGGATATTGCGCAAGTCGTCGATCCGTC
GAAGAAAGACTCGCGATGGCCCGGTCGGGTGGACTTACAAGCTCGGGGAG
ACGGGGTATCATCTCGGTACAAACGACTCGTGTATCCGGGCATTCTCTTT
GGTCACGGTCACGCGCAGGAAAAACGCGAATTTATCGTCGATCCGCTTGG
CATGGTGCGGTACGGAGTAACGGATTGGCTCACGATTGAGACGACGCCAA
TTTACTATCTGGCCGAAAGGTTCAATCTTGGTGCAACGTTCCGCGCAATC
GAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig104463:544..846+

>mRNA_P-canaliculata_contig104463.614.1 ID=mRNA_P-canaliculata_contig104463.614.1|Name=mRNA_P-canaliculata_contig104463.614.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig104463:544..846+ (Pelvetia canaliculata dioecious)
CAAAATCAAATTGTACGACTAGGGGATATTGCGCAAGTCGTCGATCCGTC
GAAGAAAGACTCGCGATGGCCCGGTCGGGTGGACTTACAAGCTCGGGGAG
ACGGGGTATCATCTCGGTACAAACGACTCGTGTATCCGGGCATTCTCTTT
GGTCACGGTCACGCGCAGGAAAAACGCGAATTTATCGTCGATCCGCTTGG
CATGGTGCGGTACGGAGTAACGGATTGGCTCACGATTGAGACGACGCCAA
TTTACTATCTGGCCGAAAGGTTCAATCTTGGTGCAACGTTCCGCGCAATC
GACCAAAATCAAATTGTACGACTAGGGGATATTGCGCAAGTCGTCGATCC
GTCGAAGAAAGACTCGCGATGGCCCGGTCGGGTGGACTTACAAGCTCGGG
GAGACGGGGTATCATCTCGGTACAAACGACTCGTGTATCCGGGCATTCTC
TTTGGTCACGGTCACGCGCAGGAAAAACGCGAATTTATCGTCGATCCGCT
TGGCATGGTGCGGTACGGAGTAACGGATTGGCTCACGATTGAGACGACGC
CAATTTACTATCTGGCCGAAAGGTTCAATCTTGGTGCAACGTTCCGCGCA
ATCGAC
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