mRNA_P-canaliculata_contig104439.607.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104439.607.1
Unique NamemRNA_P-canaliculata_contig104439.607.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A402D5M7_9BACT (Uncharacterized protein n=1 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402D5M7_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 5.990e-8
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   79 SLLQTEIAIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKVLE 306
            + L+ E+A+R Y+ +    PE LA+L P  +  VP D  +   T S +Y    +G S++LYSVG D +DDGGK +E
Sbjct:  338 AFLEVELALRAYQLQHHAYPESLAALTPTLIPNVPADPFAP--THSLNYRK--EGASYRLYSVGPDGVDDGGKAIE 409
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A2A2R984_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium Tous-C9LFEB TaxID=1982333 RepID=A0A2A2R984_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.130e-7
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    4 LMLHFCEDSAENSIRRSLVRRNVKRSLLQTEIAIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKVL 303
            L+L F  +     I + ++ +N    L Q    +  YR   G  P  LA L P+F+ +VP   H     +  HY + +DGN + LYSVG +S+DDGGK++
Sbjct:  353 LLLAFMTEGTSGCIEKIVMTQNYL-DLAQLACGLERYRLANGKYPATLAELEPKFIERVP---HDLCTGEPLHYRVESDGN-YALYSVGFNSVDDGGKIV 447
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A2S8SNV7_9BACT (Uncharacterized protein n=1 Tax=Abditibacterium utsteinense TaxID=1960156 RepID=A0A2S8SNV7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 7.280e-7
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   79 SLLQTEIAIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKVLE 306
            ++L   +A+R + ++ G  P+KL+ L P  L+K+P DA++  D   FH+     G   +LYSVG D  DDGGK L+
Sbjct:  351 NVLLLRLALRAFEAENGRLPQKLSELSPRILAKIPTDAYA--DGAPFHFLWK--GQKPRLYSVGPDGKDDGGKPLK 422
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A3B8Q7P2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3B8Q7P2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.240e-5
Identity = 34/79 (43.04%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:   58 VRRNVKRSLLQTEIAIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGG 294
            VR  V      T  A+  YR + G  PEKLA+LVP+FLS VP D     D Q   Y  + D    +L+SVG +  DDGG
Sbjct:  538 VRAEVTARCAATACALERYRLRTGAYPEKLAALVPDFLSAVPRDP---MDNQPLRYARTTD-ELFRLWSVGENGRDDGG 612
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A518LGM5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium RAS2 TaxID=2528035 RepID=A0A518LGM5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   73 KRSLLQTEIAIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKV 300
            +R +L   IA   +R + G  P +L  L PEFL + P+D    FD +    E   DG   KL++VG D IDDGG++
Sbjct:  372 RRQMLIAAIACEAFRVRRGQWPARLEELTPEFLERTPVDP---FDGRPIRLESIPDGI--KLWTVGSDFIDDGGRI 442
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BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Match: A0A1T4XRL4_9BACT (Uncharacterized protein n=2 Tax=Prosthecobacter debontii TaxID=48467 RepID=A0A1T4XRL4_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 7.920e-5
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  100 AIRLYRSKFGHPPEKLASLVPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKV 300
            A+  Y  K  + P+KL  L+P+FL+ VP+D     D Q   Y L+ D   +KL+ VG D  DDGGKV
Sbjct:  424 ALERYYLKHQNYPDKLQQLLPDFLNSVPLDP---MDHQPVRYTLT-DSGRYKLWCVGVDGRDDGGKV 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104439.607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A402D5M7_9BACT5.990e-840.79Uncharacterized protein n=1 Tax=Capsulimonas corti... [more]
A0A2A2R984_9BACT1.130e-735.00Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2S8SNV7_9BACT7.280e-739.47Uncharacterized protein n=1 Tax=Abditibacterium ut... [more]
A0A3B8Q7P2_9BACT1.240e-543.04Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A518LGM5_9BACT1.650e-539.47Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A1T4XRL4_9BACT7.920e-543.28Uncharacterized protein n=2 Tax=Prosthecobacter de... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104439contigP-canaliculata_contig104439:561..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog595460.RRSWK_00770
EggNOG OGs2EJMI@1,2J1MT@203682,33DCE@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.9993002-CDS-P-canaliculata_contig104439:560..8631622815614.9993002-CDS-P-canaliculata_contig104439:560..863Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104439 561..863 -
1693494167.2331498-CDS-P-canaliculata_contig104439:560..8631693494167.2331498-CDS-P-canaliculata_contig104439:560..863Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104439 561..863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.0097432-UTR-P-canaliculata_contig104439:863..8691622815615.0097432-UTR-P-canaliculata_contig104439:863..869Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104439 864..869 -
1693494167.2445555-UTR-P-canaliculata_contig104439:863..8691693494167.2445555-UTR-P-canaliculata_contig104439:863..869Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104439 864..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104439.607.1prot_P-canaliculata_contig104439.607.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104439 561..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104439.607.1

>prot_P-canaliculata_contig104439.607.1 ID=prot_P-canaliculata_contig104439.607.1|Name=mRNA_P-canaliculata_contig104439.607.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
MLHFCEDSAENSIRRSLVRRNVKRSLLQTEIAIRLYRSKFGHPPEKLASL
VPEFLSKVPIDAHSTFDTQSFHYELSADGNSHKLYSVGRDSIDDGGKVLE
P
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mRNA from alignment at P-canaliculata_contig104439:561..869-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104439.607.1 ID=mRNA_P-canaliculata_contig104439.607.1|Name=mRNA_P-canaliculata_contig104439.607.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at P-canaliculata_contig104439:561..869- (Pelvetia canaliculata dioecious)
CGATTAATGCTCCATTTCTGCGAAGATTCAGCAGAAAATTCAATAAGAAG
GTCGCTCGTTCGTCGAAACGTGAAACGTTCGCTATTGCAAACAGAGATAG
CGATCCGGTTGTACCGATCTAAGTTTGGGCACCCTCCAGAAAAGCTGGCG
AGTTTAGTTCCCGAGTTTCTTAGCAAGGTTCCCATCGACGCACACTCAAC
CTTTGATACTCAATCCTTTCACTACGAACTTTCAGCCGATGGCAACAGTC
ACAAGCTGTACAGTGTTGGTAGAGACAGCATTGACGACGGCGGAAAAGTG
CTCGAACCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104439:561..869-

>mRNA_P-canaliculata_contig104439.607.1 ID=mRNA_P-canaliculata_contig104439.607.1|Name=mRNA_P-canaliculata_contig104439.607.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig104439:561..869- (Pelvetia canaliculata dioecious)
ATGCTCCATTTCTGCGAAGATTCAGCAGAAAATTCAATAAGAAGGTCGCT
CGTTCGTCGAAACGTGAAACGTTCGCTATTGCAAACAGAGATAGCGATCC
GGTTGTACCGATCTAAGTTTGGGCACCCTCCAGAAAAGCTGGCGAGTTTA
GTTCCCGAGTTTCTTAGCAAGGTTCCCATCGACGCACACTCAACCTTTGA
TACTCAATCCTTTCACTACGAACTTTCAGCCGATGGCAACAGTCACAAGC
TGTACAGTGTTGGTAGAGACAGCATTGACGACGGCGGAAAAGTGCTCGAA
CCAATGCTCCATTTCTGCGAAGATTCAGCAGAAAATTCAATAAGAAGGTC
GCTCGTTCGTCGAAACGTGAAACGTTCGCTATTGCAAACAGAGATAGCGA
TCCGGTTGTACCGATCTAAGTTTGGGCACCCTCCAGAAAAGCTGGCGAGT
TTAGTTCCCGAGTTTCTTAGCAAGGTTCCCATCGACGCACACTCAACCTT
TGATACTCAATCCTTTCACTACGAACTTTCAGCCGATGGCAACAGTCACA
AGCTGTACAGTGTTGGTAGAGACAGCATTGACGACGGCGGAAAAGTGCTC
GAACCA
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