mRNA_P-canaliculata_contig104379.601.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104379.601.1
Unique NamemRNA_P-canaliculata_contig104379.601.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: UPI00167A21C7 (tetratricopeptide repeat protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167A21C7)

HSP 1 Score: 246 bits (627), Expect = 1.820e-79
Identity = 128/182 (70.33%), Postives = 152/182 (83.52%), Query Frame = 1
Query:    1 EKKAQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAITAPEPVEETVPETQ 546
            +KKAQ VSAVYTAADK+LD G+ D AV  FVELG  GPDGYAGL+LMRAAAIR  +GD + A++ FDQAAE+F+ PRHKQLAQLKAAYLLA  GAYSDVI R+  LA  DAPYE L+RELLG+A+SE+G+AS+AREQF++LTS+PGVP TVKQRAEQSMALM  KT ++APEP++    ETQ
Sbjct:   50 DKKAQVVSAVYTAADKKLDSGDADAAVQAFVELGETGPDGYAGLSLMRAAAIRQEQGDTMGAVRLFDQAAERFTMPRHKQLAQLKAAYLLADMGAYSDVIGRLATLAVKDAPYEHLSRELLGYAHSEAGDASAAREQFSFLTSVPGVPTTVKQRAEQSMALMNAKTGLSAPEPIDVLQTETQ 231          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: UPI0004231EA6 (tetratricopeptide repeat protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0004231EA6)

HSP 1 Score: 183 bits (464), Expect = 7.340e-55
Identity = 97/176 (55.11%), Postives = 127/176 (72.16%), Query Frame = 1
Query:    1 EKKAQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTA---ITAPEP 519
            +K A++ SA Y AA  +   GN D+++A+F+ +    P GYAGL+L+RAAA++   GD   A++  D+AA  F APRH QLAQ+KAAY+LA  GAYSDVI R+ PL E DAPYEFLAREL+GFA  +SG+   AREQF YL SIPGVP T+K+RA+Q+++LM    A   I+APEP
Sbjct:   50 DKSARATSASYVAAANKAAAGNDDDSIADFMAIADEAPAGYAGLSLVRAAALKLEAGDSGEAVRLLDRAASTFEAPRHAQLAQIKAAYILANDGAYSDVINRLGPLIEKDAPYEFLARELMGFAALKSGDEILAREQFGYLESIPGVPATIKERAKQNLSLMRTAAASATISAPEP 225          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A420WKN2_9PROT (TPR_21 domain-containing protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WKN2_9PROT)

HSP 1 Score: 152 bits (383), Expect = 1.810e-42
Identity = 82/173 (47.40%), Postives = 113/173 (65.32%), Query Frame = 1
Query:   10 AQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMG--VKTAITAPEPV 522
            A++ SA Y +A +    G  D AV  F+ L    P GY+GL+LMRAA +   +G    A+  FD+AA +F  PRH  LA+LKAAY+LA  GAY+DV  R+  LA  DAPYE+LAREL GF   +SG+ ++AR++F YL SIPGVP ++ QRA Q ++L+   ++    APEP+
Sbjct:   53 ARAASASYISAAELAQNGEVDRAVDSFLALADKAPAGYSGLSLMRAATLELEQGSRAKAVALFDEAAAQFKLPRHAHLAKLKAAYILADNGAYADVSMRLDSLAAKDAPYEYLARELAGFVAFQSGDMTTARQEFTYLKSIPGVPSSIAQRATQYLSLVPAELEAETVAPEPL 225          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A520XIX9_9ACTN (Tetratricopeptide repeat protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XIX9_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 1.250e-39
Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 1
Query:    7 KAQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAITAPEPVEETVPETQED 552
            KA+  SA + AADK  DEG+   A+ +F+ L    P+GY GL+  RAAA++   GD   A+  FD+AA  F+ P HK LA LKAAY+L  +G Y DV  R   L+  DAPY  LA+ELL  A  +SG+  +AR QF YL+++PGV   VK RAEQS+ LM    A+ AP     T+ E+ ED
Sbjct:   52 KARKASASFVAADKLADEGDLQAAIDKFLALAEVSPEGYTGLSYSRAAALKVQLGDMDGAVNLFDRAAGAFTKPIHKDLASLKAAYILMDEGRYDDVKARANSLSVDDAPYADLAKELLAHAALQSGDEQTARTQFTYLSNVPGVLNGVKMRAEQSLLLMNASRAVPAP-----TLEESTED 228          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A2G1Y612_9PROT (TPR_21 domain-containing protein n=3 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G1Y612_9PROT)

HSP 1 Score: 126 bits (316), Expect = 1.500e-32
Identity = 75/165 (45.45%), Postives = 98/165 (59.39%), Query Frame = 1
Query:   10 AQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAI 504
            A+S SA Y +A K    G+   A+A+FV L    PDGYAGL+L RAA ++   GD   A+  FDQA EKF  P HK LA LKA Y+L  QG Y +V  R + LA   APY  LA+E+L  A   S +  SAR QF+YL++ PGV   VK R+  ++AL+     +
Sbjct:   53 AKSASAAYMSAGKIEASGDLQAAIAKFVALAEVAPDGYAGLSLTRAAGMKVQLGDLEGAVSLFDQATEKFGKPVHKDLAGLKAVYILLDQGLYDEVQVRASALAVDGAPYADLAKEVLAHAAFNSEDIDSARSQFSYLSNAPGVLSGVKARSGAALALINANRPV 217          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A7V5NY22_9PROT (Tetratricopeptide repeat protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7V5NY22_9PROT)

HSP 1 Score: 115 bits (287), Expect = 3.090e-28
Identity = 71/169 (42.01%), Postives = 97/169 (57.40%), Query Frame = 1
Query:    4 KKAQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAITA 510
            K A++ SA Y AA +   EG+  +A A+++ L    PDGYAGL+L RAA I    G+   A+   DQA   +S   HK LA LKA Y+L   G Y+DV  R   L + D+PY  LA+E+   A  +SG    AR+ F YL + PGV   VK RA Q++AL+  K ++ A
Sbjct:   51 KLAKAASASYMAAARLEKEGDLQKAQAKYLALSKVAPDGYAGLSLERAAGIAVRLGNYDKAVNLLDQAVVHYSDKLHKDLAALKAVYILMDAGRYADVELRAGALVDGDSPYRDLAQEIQAQAEMKSGKIERARKTFTYLANAPGVQAGVKARAGQALALLKAKKSVEA 219          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A258CA13_9PROT (TPR_21 domain-containing protein n=1 Tax=Caulobacterales bacterium 32-67-6 TaxID=1970502 RepID=A0A258CA13_9PROT)

HSP 1 Score: 109 bits (272), Expect = 5.510e-26
Identity = 65/167 (38.92%), Postives = 89/167 (53.29%), Query Frame = 1
Query:   22 SAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAITAPEPV 522
            S  Y    +   EG+  +A   F E+ A+GP+GYA LALM+ A +R N+GD   A+K FD+AAEK S P     A+LK+A+ L      S++  R+ PL E   PY  LA E L FA    G    AR  F  L  +PGV    +QRA+ + A++    A   P+ V
Sbjct:   57 SQAYAEGVEAFGEGDLKKAEQRFAEVAADGPEGYAALALMQQAGLRVNDGDVEAAVKLFDEAAEKASDPVLADAARLKSAFALLDTAPLSELKTRLEPLTEEGRPYRALALEALAFAKLLGGEMDEARSDFGVLALLPGVSDVARQRAQAARAMIDSGAASALPDVV 223          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A6N1VDG4_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Oricola thermophila TaxID=2742145 RepID=A0A6N1VDG4_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 7.450e-18
Identity = 55/137 (40.15%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   58 EGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRH-KQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRA 465
            EG  DEA+AE   L A G   Y  LA MRAA     +GD   A+  FD  A   SAP   +++A+++AAY+L   G+ +DV ER  PL+  D P    ARE LG A  + G    AR  F  +   P  P   +QRA
Sbjct:   71 EGKADEALAELRALEAEGYGAYPVLARMRAATALQEKGDVEGAVAAFDAVAADTSAPEAIREMARIRAAYILVDTGSAADVAERAEPLSSDDHPLRHAAREALGLAAWKEGRLGDARALFNQIVDDPAAPRNAQQRA 207          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A2D7ZJ66_9CAUL (TPR_21 domain-containing protein n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A2D7ZJ66_9CAUL)

HSP 1 Score: 86.7 bits (213), Expect = 2.440e-17
Identity = 57/167 (34.13%), Postives = 76/167 (45.51%), Query Frame = 1
Query:   22 SAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALMGVKTAITAPEPV 522
            S  Y    +    G+ D+A   F E+ A GPDGYA LALM+ A +R N+                   P     A+LK+A+ L      S++  R+ PL E   PY  LA E L FA    G    AR  F  L  +PGV    +QRA+ + A++   TA   PE V
Sbjct:   57 SETYAEGVEAFGAGDMDKAEQRFAEVAAEGPDGYAALALMQQAGLRVNDXXXXXXXXXXXXXXXXXXXPILADAARLKSAFALLDTAPLSELKTRLEPLTEEGRPYRALALEALAFAKLMGGEMDEARADFGVLALMPGVSELARQRAQAARAMIDSGTAGALPEAV 223          
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Match: A0A4R0PAT9_9HYPH (Tetratricopeptide repeat protein n=1 Tax=Oricola cellulosilytica TaxID=1429082 RepID=A0A4R0PAT9_9HYPH)

HSP 1 Score: 84.7 bits (208), Expect = 7.830e-17
Identity = 55/153 (35.95%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   31 YTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAAAIRHNEGDEITAIKYFDQAAEKFSAPRH-KQLAQLKAAYLLAGQGAYSDVIERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPTVKQRAEQSMALM 486
            + AA     EGN + A+AE   L  +G   Y  LA MRAA +   +GD   A+  FD+ A   SAP   + +A+++AAY+L   G+ SDV ER  PLA    P    ARE LG A  +    + A+  F  +   P  P    QRA   + L+
Sbjct:   62 FLAALNDAGEGNTEAALAELRSLEQDGYGAYPVLARMRAATLLQQQGDAAGAVAAFDEVAADGSAPDAIRDIARIRAAYILVDSGSASDVAERAEPLASDSHPMRHAAREALGLAAWKEERLADAKALFQQILDDPAAPRNTMQRASLMLDLI 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104379.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167A21C71.820e-7970.33tetratricopeptide repeat protein n=1 Tax=Litorimon... [more]
UPI0004231EA67.340e-5555.11tetratricopeptide repeat protein n=1 Tax=Hellea ba... [more]
A0A420WKN2_9PROT1.810e-4247.40TPR_21 domain-containing protein n=1 Tax=Litorimon... [more]
A0A520XIX9_9ACTN1.250e-3946.70Tetratricopeptide repeat protein n=2 Tax=Bacteria ... [more]
A0A2G1Y612_9PROT1.500e-3245.45TPR_21 domain-containing protein n=3 Tax=Robiginit... [more]
A0A7V5NY22_9PROT3.090e-2842.01Tetratricopeptide repeat protein n=1 Tax=Hellea ba... [more]
A0A258CA13_9PROT5.510e-2638.92TPR_21 domain-containing protein n=1 Tax=Caulobact... [more]
A0A6N1VDG4_9HYPH7.450e-1840.15Tetratricopeptide repeat protein n=1 Tax=Oricola t... [more]
A0A2D7ZJ66_9CAUL2.440e-1734.13TPR_21 domain-containing protein n=1 Tax=Phenyloba... [more]
A0A4R0PAT9_9HYPH7.830e-1735.95Tetratricopeptide repeat protein n=1 Tax=Oricola c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104379contigP-canaliculata_contig104379:3..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score187.6
Seed ortholog evalue5.5e-45
Seed eggNOG ortholog1121948.AUAC01000003_gene2296
EggNOG OGs1PDJJ@1224,2VAA9@28211,43YBA@69657,COG4649@1,COG4649@2
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size570
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.5017602-CDS-P-canaliculata_contig104379:2..5721622815614.5017602-CDS-P-canaliculata_contig104379:2..572Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104379 3..572 +
1693494166.9407647-CDS-P-canaliculata_contig104379:2..5721693494166.9407647-CDS-P-canaliculata_contig104379:2..572Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104379 3..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104379.601.1prot_P-canaliculata_contig104379.601.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104379 3..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104379.601.1

>prot_P-canaliculata_contig104379.601.1 ID=prot_P-canaliculata_contig104379.601.1|Name=mRNA_P-canaliculata_contig104379.601.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=190bp
EKKAQSVSAVYTAADKQLDEGNPDEAVAEFVELGANGPDGYAGLALMRAA
AIRHNEGDEITAIKYFDQAAEKFSAPRHKQLAQLKAAYLLAGQGAYSDVI
ERMTPLAETDAPYEFLARELLGFAYSESGNASSAREQFAYLTSIPGVPPT
VKQRAEQSMALMGVKTAITAPEPVEETVPETQEDATDEE*
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mRNA from alignment at P-canaliculata_contig104379:3..572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104379.601.1 ID=mRNA_P-canaliculata_contig104379.601.1|Name=mRNA_P-canaliculata_contig104379.601.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at P-canaliculata_contig104379:3..572+ (Pelvetia canaliculata dioecious)
GAAAAGAAAGCGCAATCTGTCTCCGCCGTTTACACGGCAGCGGATAAACA GCTGGACGAGGGCAACCCCGACGAAGCGGTTGCTGAATTCGTAGAATTGG GCGCAAATGGTCCCGACGGCTATGCGGGACTAGCTCTGATGCGAGCAGCA GCCATCCGCCACAATGAAGGCGACGAAATCACCGCCATCAAATATTTTGA CCAAGCGGCGGAGAAATTTTCTGCCCCGCGGCATAAGCAGTTGGCGCAGT TAAAAGCCGCATATTTGCTCGCGGGTCAGGGCGCGTATTCAGATGTGATT GAGCGTATGACTCCACTGGCTGAAACGGATGCGCCGTATGAATTTTTGGC GCGGGAGCTCTTGGGCTTCGCCTATTCCGAATCCGGCAATGCGTCATCGG CGCGGGAGCAATTTGCCTATCTGACGTCTATCCCGGGTGTGCCCCCTACG GTCAAACAACGGGCAGAACAATCTATGGCTCTGATGGGCGTGAAGACAGC CATTACGGCTCCCGAGCCGGTTGAAGAGACCGTTCCAGAAACGCAGGAAG ACGCGACTGATGAAGAATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104379:3..572+

>mRNA_P-canaliculata_contig104379.601.1 ID=mRNA_P-canaliculata_contig104379.601.1|Name=mRNA_P-canaliculata_contig104379.601.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at P-canaliculata_contig104379:3..572+ (Pelvetia canaliculata dioecious)
GAAAAGAAAGCGCAATCTGTCTCCGCCGTTTACACGGCAGCGGATAAACA
GCTGGACGAGGGCAACCCCGACGAAGCGGTTGCTGAATTCGTAGAATTGG
GCGCAAATGGTCCCGACGGCTATGCGGGACTAGCTCTGATGCGAGCAGCA
GCCATCCGCCACAATGAAGGCGACGAAATCACCGCCATCAAATATTTTGA
CCAAGCGGCGGAGAAATTTTCTGCCCCGCGGCATAAGCAGTTGGCGCAGT
TAAAAGCCGCATATTTGCTCGCGGGTCAGGGCGCGTATTCAGATGTGATT
GAGCGTATGACTCCACTGGCTGAAACGGATGCGCCGTATGAATTTTTGGC
GCGGGAGCTCTTGGGCTTCGCCTATTCCGAATCCGGCAATGCGTCATCGG
CGCGGGAGCAATTTGCCTATCTGACGTCTATCCCGGGTGTGCCCCCTACG
GTCAAACAACGGGCAGAACAATCTATGGCTCTGATGGGCGTGAAGACAGC
CATTACGGCTCCCGAGCCGGTTGAAGAGACCGTTCCAGAAACGCAGGAAG
ACGCGACTGATGAAGAATAAGAAAAGAAAGCGCAATCTGTCTCCGCCGTT
TACACGGCAGCGGATAAACAGCTGGACGAGGGCAACCCCGACGAAGCGGT
TGCTGAATTCGTAGAATTGGGCGCAAATGGTCCCGACGGCTATGCGGGAC
TAGCTCTGATGCGAGCAGCAGCCATCCGCCACAATGAAGGCGACGAAATC
ACCGCCATCAAATATTTTGACCAAGCGGCGGAGAAATTTTCTGCCCCGCG
GCATAAGCAGTTGGCGCAGTTAAAAGCCGCATATTTGCTCGCGGGTCAGG
GCGCGTATTCAGATGTGATTGAGCGTATGACTCCACTGGCTGAAACGGAT
GCGCCGTATGAATTTTTGGCGCGGGAGCTCTTGGGCTTCGCCTATTCCGA
ATCCGGCAATGCGTCATCGGCGCGGGAGCAATTTGCCTATCTGACGTCTA
TCCCGGGTGTGCCCCCTACGGTCAAACAACGGGCAGAACAATCTATGGCT
CTGATGGGCGTGAAGACAGCCATTACGGCTCCCGAGCCGGTTGAAGAGAC
CGTTCCAGAAACGCAGGAAGACGCGACTGATGAAGAATAA
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