mRNA_P-canaliculata_contig104352.598.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: UPI00167AC658 (O-antigen ligase family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167AC658) HSP 1 Score: 324 bits (830), Expect = 3.550e-106 Identity = 162/268 (60.45%), Postives = 205/268 (76.49%), Query Frame = 1
Query: 16 WAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHW 819
WA+I I+G A++ DAA+GYALS++GDPV G +PV+R DAEMNLGRGQVSYA WPVAAL++ + K+G LA+ + L VSAQ N+LSIVIPAL L+ GFA AW RP+ G+ L F LAI +I+ APL+G SS D E MR++PLSWEHRLRMWAYSW+LI+QTP IG+GFDS+R++D++TF+APDGR+I V+SMHPHNIGLQIWLETG++G +L G L+ALL+ +LK C + GL+ AT AVTVGVWQHW
Sbjct: 122 WALIIGSIIGVAIIWIDAATGYALSIWGDPVAPGANPVQRRSDAEMNLGRGQVSYALLAWPVAALMIAKMKRGVWLAIALLIGLAVSAQLNNLSIVIPALALSAGFAGFAWWRPRWGVILAFSLAIASIVFAPLLGIFSSLFDIETMRKIPLSWEHRLRMWAYSWELIQQTPWIGHGFDSSRIYDQVTFQAPDGRNIPVISMHPHNIGLQIWLETGLIGVVLMVGTLVALLETSLKTCQNSLQSIGVAGLVSATATCSAVTVGVWQHW 389
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A8J3CQU2_9PROT (O-antigen polymerase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CQU2_9PROT) HSP 1 Score: 200 bits (508), Expect = 1.080e-57 Identity = 119/293 (40.61%), Postives = 170/293 (58.02%), Query Frame = 1
Query: 10 IIWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQG--WILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPA-AAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIE 879
I+ AV AG+ A+L D ASGY ++ F DPV GED +R GDAEMN+GRG V+YA L + A R G W + +++ N LSIV + LA F ++ ++ P+ G+ L +I+ APLVG +S M RLP+SW+HRLRMW YS I ++P IG G DS+R F E F G D+ +S+HPHNIGLQ W+E G +GALL + +++L P +L A A +G+L++ + AVTVG WQ+WWW L+ L ++L+ L+ ++
Sbjct: 121 ILMAVAFAGV---AILALDVASGYGINTFLDPVGVGEDLNQRQGDAEMNIGRGHVAYAVILPLLLAFFATRLPPGRFWPTTITFIALILIGTMLNRLSIVPMIMLLAAPFFIMGYKTPRWGLRLSLSALAASIVFAPLVGVVSRMAGEGTMARLPMSWDHRLRMWDYSLSRITESPWIGKGLDSSRSFQE-AFTTRIGVDVPFVSLHPHNIGLQTWVEAGAIGALLLTLAIVSLYAPLRRLTGDHAWRGAAVSGMLMSATVASAVTVGAWQYWWWGLLGLCLALVLLIPTKLD 409
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: UPI00042211A6 (O-antigen ligase family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00042211A6) HSP 1 Score: 180 bits (457), Expect = 3.150e-50 Identity = 113/296 (38.18%), Postives = 165/296 (55.74%), Query Frame = 1
Query: 22 VIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWIL-ALGAFLTLIVSAQF-NHLSIVIPALGLAG--GFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLL---RQPIETVD 888
++ I GA LL+ D S + L+LF +P + + R+ DAEMNLG PV+ L+L R + A+ F+ L+ A N LS+ + LGL G G L + P+ + AI I+ APL+ + +SH +PLSW+HRLRMW Y W++I PLIG GFD++R FDE T+ A DGR+I +S+HPHN G+QIW ETG++GALLAS + +L+KP K A A +G+++ ++T G WQ WWW + +V + LL ++P+ D
Sbjct: 118 LMSTSIFGAGLLVIDLLSDFGLTLFFNPANDFNEKIFRIIDAEMNLGHAITILVLLAAPVSMLMLARLPKALAKPAMALFIGLLACATLLNDLSVGL--LGLMGVLGAMTLGYFLPRRTPAALLIFAICVIMAAPLMAYFASHYAQNPPGDVPLSWDHRLRMWGYCWNVIIDNPLIGAGFDASRSFDE-TYIAKDGREIVTVSLHPHNAGVQIWTETGLIGALLASAVIASLIKPVQKFVQSRGHAGAISGVIIATLIISSLTYGAWQFWWWGCVFFAVGTLHLLPASKRPVPIDD 410
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2J2P8_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J2P8_9PROT) HSP 1 Score: 159 bits (402), Expect = 5.630e-42 Identity = 110/304 (36.18%), Postives = 164/304 (53.95%), Query Frame = 1
Query: 1 KPAIIWAVIGAGILGAAL-LLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIV--------SAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDEL-TFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALL---ASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQP 873
K I+ ++ G L ++ +L D SGYA+S DP+ G+D R+GD N+G L PV+ LL R + G A LTL+V + Q + AL L G LA RRP L + GF LA +IL APL+ F+S+H+ + LP SWE R+ W+Y + Q P++G+GFD+ R+F++ T R +GR ++S+HPHN GL IW+E G++GA+L A F L L +L A ++GLL+ V T +++ GVWQ WWWA I+ + + + + +P
Sbjct: 138 KAKILTGILCVGTLALSVSILVDQLSGYAISFAVDPLDPGQDLTARIGDMIQNIGHATSVLTLLLAPVSVLLWTRGRIGK----AASLTLVVLTLACGFTTGQSASTLGALTALLLMG----LASRRPVLALRTGFLLAGASILFAPLLAFLSAHLGANIKNALPFSWEERVENWSYLSQKLSQHPIVGHGFDAVRMFNDTHTIRGFEGR--ALVSLHPHNAGLHIWVELGVIGAVLSCTALYFALRYLSVPNRLSKTQMVA--TSGLLIAVVTMSSLSYGVWQDWWWASIIFAGAQVFFINKP 429
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2MQY4_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MQY4_9PROT) HSP 1 Score: 158 bits (399), Expect = 9.840e-42 Identity = 107/295 (36.27%), Postives = 155/295 (52.54%), Query Frame = 1
Query: 22 VIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSA-------QFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVF-DELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAA----FASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQ 870
+IG + + ++L D SGY ++ DP+ GED + GD NLG PV+ LL ++ G AL F ++ SA +F L +++P GLA + W P+ + F A +I AP++G+++S + E +LP SWE R+ WAY +D I Q P G+GFD+ R F D T R +GR ++S+HPHN GLQIW E G+VGA+LA LAL +L + A A GL V+V +T GVWQ WWWA ++ S +LI +R+
Sbjct: 132 LIGMTFIWSVVVLMDVLSGYGVTRLIDPLAVGEDMEAKWGDMIQNLGHAVSVLTLLFVPVSVLLWLKGGAGKFAALALFALVLSSAIFADMNSRFIALVVLVPLFGLA-----IYW--PRFAVRGAFFAAAASIFFAPVLGYVASKVTSEWRSQLPFSWEERVENWAYMYDKILQKPWFGHGFDAVRTFTDTHTIRGFEGR--ALVSLHPHNAGLQIWGELGLVGAVLAC---LALFFAQKRLTEQGVLAKPQLVALAGLTVSVTVIAGITYGVWQDWWWATVIFSAALISFVRK 414
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2GJ66_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJ66_9PROT) HSP 1 Score: 151 bits (381), Expect = 4.200e-39 Identity = 96/270 (35.56%), Postives = 151/270 (55.93%), Query Frame = 1
Query: 52 LLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDEL-TFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAA-----FASTGLLVTVATSGAVTVGVWQHWWWALIVLS 843
L+L D+ S YA++L DP++ G+ + GD NLG G + L PV+ L ++ +G I+A+ + +I + S + A F LLA +PK +S F +A+ ++L APL+ F +S + + LP SWE R+ W Y ++ IR+ P++G+GFD+ R F++ T R +GR ++S+HPHN GL IW+E G VGA LA +AL+ +K P A +G+ V V+ +++ GVWQ WWWA+I+ S
Sbjct: 137 LILCDSVSNYAVTLTFDPIKDGQSLHAKYGDMVQNLGHGTSVLSLMLAPVSILFWLQGGRGKIIAIAYVIFVIACCVATNQSASLIGTVCALVFMLLANWKPKFMVSSAFIVAMCSVLFAPLLAFFASRLSIDAKNSLPFSWEERVENWGYLFEKIREHPILGHGFDAVRTFNDTHTIRGFEGR--ALVSLHPHNAGLHIWVELGGVGACLAC---IALVF-AMKFLIHPGRLSKIQLVAVSGITVAVSMMASLSYGVWQDWWWAIIIFS 400
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A7Y1X6G6_9PROT (O-antigen ligase family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y1X6G6_9PROT) HSP 1 Score: 147 bits (370), Expect = 1.690e-37 Identity = 99/295 (33.56%), Postives = 149/295 (50.51%), Query Frame = 1
Query: 13 IWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVF-DELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRP---AAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIETV 885
IW I + I +L D +GYA+SL DPV GE R GD NLG G PVA L +G ++ ++ + F +S + AL LA F +PK+ + LA +++L AP + F+SS + + LP SWE R+ W Y + I + P++G+GFD+ R F D+ + R D R ++S+HPHN GL IW+E G++G ++ + K ++ R A A TG T+ ++T GVWQ WWWA I+L+ S+I L+ E +
Sbjct: 130 IWGTIASAIA----ILIDLTTGYAISLAVDPVSPGESFESRRGDVIQNLGHGVAVLTLLFPPVATALWQAGAKGRAASIVLAAIILATGFFAGMSASMLALCLALVFMAFVLLKPKIAVGTVHILAGLSLLTAPFIAFLSSRLSNAQLAALPFSWEERIHNWRYIYHKILEHPIVGHGFDAVRTFEDKHSIRGFDDR--AIVSLHPHNAGLHIWVELGLIGISISVLAIYLSYKTMRRISERNKFFAIAICGTG--AAALTNASLTFGVWQDWWWASIILAFSVIALIPYTTENI 416
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A848V2G7_9PROT (O-antigen ligase family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V2G7_9PROT) HSP 1 Score: 142 bits (357), Expect = 1.280e-35 Identity = 97/290 (33.45%), Postives = 144/290 (49.66%), Query Frame = 1
Query: 34 GILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDI-------TVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPA-AAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIE 879
G + +LLL D +GYAL DP+ G+ P +R NL A + + L + G LA+ + +IVSA L+ A+G A F ++A PK + LAI +I+ APL G+ + + SWEHR+ MW+Y + I + P G+GFD++R FD R DG + T++S+HPHN GLQ+W+ETG +GALL S FL L K + + +A G + T +T GVWQ WWW ++ +LI +++ E
Sbjct: 131 GFVTLSLLLFDQITGYALIDLFDPLDEGQHPEKRQHIIYQNLSHSVTILALLVPIITPRLWQEGRTGKGLAVIFLVGVIVSAILGKLAAGALAVGAAALFMIIARHWPKRAVKAVMALAIASIMFAPLAGYAMQKVPQSTKENVADSWEHRIEMWSYVSEKIGEKPFFGHGFDASRTFD----RKYDGMSVNGKPYEQTIISLHPHNSGLQVWVETGAIGALLFSLFLFMLQKKLTSYVEKDSYSAVYIAGYVAAALTICTLTYGVWQEWWWGALIFIGALIPIVKMNTE 416
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2QZU6_9PROT (Uncharacterized protein n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QZU6_9PROT) HSP 1 Score: 121 bits (304), Expect = 4.500e-28 Identity = 92/283 (32.51%), Postives = 133/283 (47.00%), Query Frame = 1
Query: 55 LLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLL----------ALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQP 873
+L D + ++L+L DP+ GE+ +R GD N+ PV+ LL + + G I A+ + + S + S L A F LA +PK + F A ILLAPL F S + PE LP SWE R+ W + I + P IG+GFD+ R F+ T D ++S+HPHN GL +W+E G VG +LA L L KP L A++GL A +++ GVWQ WW I+ S + I L+++P
Sbjct: 138 VLIDLLANHSLTLLVDPLAEGENFAQRSGDMTQNISHAVSVLVLLAAPVSMLLWQKGRFGKISAVMIIVLIGFSTHKANASAAQXGLLAALIFMGLASFKPKFVLXSAFFTAGACILLAPLFAFXSGKLSPETRTXLPFSWEERVFNWEALYQKILEHPFIGHGFDAVRTFNG-THTIRGFEDRALVSLHPHNAGLHLWVEVGFVGVVLACLALYLGARTLTGSEGLSKPRL---------IAASGLCAATAVMASLSYGVWQDWWXXXIIFSSTSIVLIKKP 410
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A8J6LQU3_9PROT (Uncharacterized protein n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6LQU3_9PROT) HSP 1 Score: 116 bits (290), Expect = 3.580e-26 Identity = 81/238 (34.03%), Postives = 121/238 (50.84%), Query Frame = 1
Query: 154 NLGRGQVSYAQFLWPVAALLLVRFKQG-WI-LALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAI---MTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLAL-LKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVS 849
N+GRG + P AA+ L F+ G W+ LALGA + ++ F+ ++ + + AG FAL WR P+ + FG A+ + I+ AP+V + + PE+ + SWE R W Y+ +LI Q P G+G D++R FD++ A G D+ M +HPH+ LQ+WLE G+VGALL + A + + A V+ GVWQ WWWA L+ S
Sbjct: 158 NVGRGASVFVVLAGPAAAMALAHFRHGRWVALALGAA-AVSIALSFDMIANAVALVAAAGAFALACWR-PRSAL---FGAALAAALWIVFAPMVITAAGPLSPEMRADMAFSWEWRWETWTYARELIVQRPFQGWGMDASRTFDQIV--AMRGFDLERMPLHPHSAALQLWLELGMVGALLGAAAACARGMSRWSEAAWTSAXXXXXXXXXXXXXXXSFVSYGVWQEWWWATAFLAAS 388 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104352.598.1 >prot_P-canaliculata_contig104352.598.1 ID=prot_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=299bp KPAIIWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEback to top mRNA from alignment at P-canaliculata_contig104352:32..928+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104352.598.1 ID=mRNA_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at P-canaliculata_contig104352:32..928+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104352:32..928+ >mRNA_P-canaliculata_contig104352.598.1 ID=mRNA_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1794bp|location=Sequence derived from alignment at P-canaliculata_contig104352:32..928+ (Pelvetia canaliculata dioecious)back to top |