mRNA_P-canaliculata_contig104352.598.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104352.598.1
Unique NamemRNA_P-canaliculata_contig104352.598.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: UPI00167AC658 (O-antigen ligase family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167AC658)

HSP 1 Score: 324 bits (830), Expect = 3.550e-106
Identity = 162/268 (60.45%), Postives = 205/268 (76.49%), Query Frame = 1
Query:   16 WAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHW 819
            WA+I   I+G A++  DAA+GYALS++GDPV  G +PV+R  DAEMNLGRGQVSYA   WPVAAL++ + K+G  LA+   + L VSAQ N+LSIVIPAL L+ GFA  AW RP+ G+ L F LAI +I+ APL+G  SS  D E MR++PLSWEHRLRMWAYSW+LI+QTP IG+GFDS+R++D++TF+APDGR+I V+SMHPHNIGLQIWLETG++G +L  G L+ALL+ +LK C     +    GL+   AT  AVTVGVWQHW
Sbjct:  122 WALIIGSIIGVAIIWIDAATGYALSIWGDPVAPGANPVQRRSDAEMNLGRGQVSYALLAWPVAALMIAKMKRGVWLAIALLIGLAVSAQLNNLSIVIPALALSAGFAGFAWWRPRWGVILAFSLAIASIVFAPLLGIFSSLFDIETMRKIPLSWEHRLRMWAYSWELIQQTPWIGHGFDSSRIYDQVTFQAPDGRNIPVISMHPHNIGLQIWLETGLIGVVLMVGTLVALLETSLKTCQNSLQSIGVAGLVSATATCSAVTVGVWQHW 389          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A8J3CQU2_9PROT (O-antigen polymerase n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CQU2_9PROT)

HSP 1 Score: 200 bits (508), Expect = 1.080e-57
Identity = 119/293 (40.61%), Postives = 170/293 (58.02%), Query Frame = 1
Query:   10 IIWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQG--WILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPA-AAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIE 879
            I+ AV  AG+   A+L  D ASGY ++ F DPV  GED  +R GDAEMN+GRG V+YA  L  + A    R   G  W   +     +++    N LSIV   + LA  F ++ ++ P+ G+ L       +I+ APLVG +S       M RLP+SW+HRLRMW YS   I ++P IG G DS+R F E  F    G D+  +S+HPHNIGLQ W+E G +GALL +  +++L  P  +L    A    A +G+L++   + AVTVG WQ+WWW L+ L ++L+ L+   ++
Sbjct:  121 ILMAVAFAGV---AILALDVASGYGINTFLDPVGVGEDLNQRQGDAEMNIGRGHVAYAVILPLLLAFFATRLPPGRFWPTTITFIALILIGTMLNRLSIVPMIMLLAAPFFIMGYKTPRWGLRLSLSALAASIVFAPLVGVVSRMAGEGTMARLPMSWDHRLRMWDYSLSRITESPWIGKGLDSSRSFQE-AFTTRIGVDVPFVSLHPHNIGLQTWVEAGAIGALLLTLAIVSLYAPLRRLTGDHAWRGAAVSGMLMSATVASAVTVGAWQYWWWGLLGLCLALVLLIPTKLD 409          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: UPI00042211A6 (O-antigen ligase family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00042211A6)

HSP 1 Score: 180 bits (457), Expect = 3.150e-50
Identity = 113/296 (38.18%), Postives = 165/296 (55.74%), Query Frame = 1
Query:   22 VIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWIL-ALGAFLTLIVSAQF-NHLSIVIPALGLAG--GFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLL---RQPIETVD 888
            ++   I GA LL+ D  S + L+LF +P     + + R+ DAEMNLG           PV+ L+L R  +     A+  F+ L+  A   N LS+ +  LGL G  G   L +  P+   +     AI  I+ APL+ + +SH        +PLSW+HRLRMW Y W++I   PLIG GFD++R FDE T+ A DGR+I  +S+HPHN G+QIW ETG++GALLAS  + +L+KP  K       A A +G+++      ++T G WQ WWW  +  +V  + LL   ++P+   D
Sbjct:  118 LMSTSIFGAGLLVIDLLSDFGLTLFFNPANDFNEKIFRIIDAEMNLGHAITILVLLAAPVSMLMLARLPKALAKPAMALFIGLLACATLLNDLSVGL--LGLMGVLGAMTLGYFLPRRTPAALLIFAICVIMAAPLMAYFASHYAQNPPGDVPLSWDHRLRMWGYCWNVIIDNPLIGAGFDASRSFDE-TYIAKDGREIVTVSLHPHNAGVQIWTETGLIGALLASAVIASLIKPVQKFVQSRGHAGAISGVIIATLIISSLTYGAWQFWWWGCVFFAVGTLHLLPASKRPVPIDD 410          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2J2P8_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J2P8_9PROT)

HSP 1 Score: 159 bits (402), Expect = 5.630e-42
Identity = 110/304 (36.18%), Postives = 164/304 (53.95%), Query Frame = 1
Query:    1 KPAIIWAVIGAGILGAAL-LLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIV--------SAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDEL-TFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALL---ASGFLLALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQP 873
            K  I+  ++  G L  ++ +L D  SGYA+S   DP+  G+D   R+GD   N+G         L PV+ LL  R + G      A LTL+V        + Q       + AL L G    LA RRP L +  GF LA  +IL APL+ F+S+H+   +   LP SWE R+  W+Y    + Q P++G+GFD+ R+F++  T R  +GR   ++S+HPHN GL IW+E G++GA+L   A  F L  L    +L      A  ++GLL+ V T  +++ GVWQ WWWA I+ + + +  + +P
Sbjct:  138 KAKILTGILCVGTLALSVSILVDQLSGYAISFAVDPLDPGQDLTARIGDMIQNIGHATSVLTLLLAPVSVLLWTRGRIGK----AASLTLVVLTLACGFTTGQSASTLGALTALLLMG----LASRRPVLALRTGFLLAGASILFAPLLAFLSAHLGANIKNALPFSWEERVENWSYLSQKLSQHPIVGHGFDAVRMFNDTHTIRGFEGR--ALVSLHPHNAGLHIWVELGVIGAVLSCTALYFALRYLSVPNRLSKTQMVA--TSGLLIAVVTMSSLSYGVWQDWWWASIIFAGAQVFFINKP 429          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2MQY4_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MQY4_9PROT)

HSP 1 Score: 158 bits (399), Expect = 9.840e-42
Identity = 107/295 (36.27%), Postives = 155/295 (52.54%), Query Frame = 1
Query:   22 VIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSA-------QFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVF-DELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAA----FASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQ 870
            +IG   + + ++L D  SGY ++   DP+  GED   + GD   NLG           PV+ LL ++   G   AL  F  ++ SA       +F  L +++P  GLA     + W  P+  +   F  A  +I  AP++G+++S +  E   +LP SWE R+  WAY +D I Q P  G+GFD+ R F D  T R  +GR   ++S+HPHN GLQIW E G+VGA+LA    LAL     +L  +   A     A  GL V+V     +T GVWQ WWWA ++ S +LI  +R+
Sbjct:  132 LIGMTFIWSVVVLMDVLSGYGVTRLIDPLAVGEDMEAKWGDMIQNLGHAVSVLTLLFVPVSVLLWLKGGAGKFAALALFALVLSSAIFADMNSRFIALVVLVPLFGLA-----IYW--PRFAVRGAFFAAAASIFFAPVLGYVASKVTSEWRSQLPFSWEERVENWAYMYDKILQKPWFGHGFDAVRTFTDTHTIRGFEGR--ALVSLHPHNAGLQIWGELGLVGAVLAC---LALFFAQKRLTEQGVLAKPQLVALAGLTVSVTVIAGITYGVWQDWWWATVIFSAALISFVRK 414          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2GJ66_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJ66_9PROT)

HSP 1 Score: 151 bits (381), Expect = 4.200e-39
Identity = 96/270 (35.56%), Postives = 151/270 (55.93%), Query Frame = 1
Query:   52 LLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDEL-TFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAA-----FASTGLLVTVATSGAVTVGVWQHWWWALIVLS 843
            L+L D+ S YA++L  DP++ G+    + GD   NLG G    +  L PV+ L  ++  +G I+A+   + +I      + S  +     A  F LLA  +PK  +S  F +A+ ++L APL+ F +S +  +    LP SWE R+  W Y ++ IR+ P++G+GFD+ R F++  T R  +GR   ++S+HPHN GL IW+E G VGA LA    +AL+   +K    P         A +G+ V V+   +++ GVWQ WWWA+I+ S
Sbjct:  137 LILCDSVSNYAVTLTFDPIKDGQSLHAKYGDMVQNLGHGTSVLSLMLAPVSILFWLQGGRGKIIAIAYVIFVIACCVATNQSASLIGTVCALVFMLLANWKPKFMVSSAFIVAMCSVLFAPLLAFFASRLSIDAKNSLPFSWEERVENWGYLFEKIREHPILGHGFDAVRTFNDTHTIRGFEGR--ALVSLHPHNAGLHIWVELGGVGACLAC---IALVF-AMKFLIHPGRLSKIQLVAVSGITVAVSMMASLSYGVWQDWWWAIIIFS 400          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A7Y1X6G6_9PROT (O-antigen ligase family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y1X6G6_9PROT)

HSP 1 Score: 147 bits (370), Expect = 1.690e-37
Identity = 99/295 (33.56%), Postives = 149/295 (50.51%), Query Frame = 1
Query:   13 IWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVF-DELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRP---AAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIETV 885
            IW  I + I     +L D  +GYA+SL  DPV  GE    R GD   NLG G         PVA  L     +G   ++     ++ +  F  +S  + AL LA  F      +PK+ +     LA +++L AP + F+SS +    +  LP SWE R+  W Y +  I + P++G+GFD+ R F D+ + R  D R   ++S+HPHN GL IW+E G++G  ++   +    K   ++  R    A A   TG      T+ ++T GVWQ WWWA I+L+ S+I L+    E +
Sbjct:  130 IWGTIASAIA----ILIDLTTGYAISLAVDPVSPGESFESRRGDVIQNLGHGVAVLTLLFPPVATALWQAGAKGRAASIVLAAIILATGFFAGMSASMLALCLALVFMAFVLLKPKIAVGTVHILAGLSLLTAPFIAFLSSRLSNAQLAALPFSWEERIHNWRYIYHKILEHPIVGHGFDAVRTFEDKHSIRGFDDR--AIVSLHPHNAGLHIWVELGLIGISISVLAIYLSYKTMRRISERNKFFAIAICGTG--AAALTNASLTFGVWQDWWWASIILAFSVIALIPYTTENI 416          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A848V2G7_9PROT (O-antigen ligase family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V2G7_9PROT)

HSP 1 Score: 142 bits (357), Expect = 1.280e-35
Identity = 97/290 (33.45%), Postives = 144/290 (49.66%), Query Frame = 1
Query:   34 GILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDI-------TVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPA-AAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIE 879
            G +  +LLL D  +GYAL    DP+  G+ P +R      NL       A  +  +   L    + G  LA+   + +IVSA    L+    A+G A  F ++A   PK  +     LAI +I+ APL G+    +       +  SWEHR+ MW+Y  + I + P  G+GFD++R FD    R  DG  +       T++S+HPHN GLQ+W+ETG +GALL S FL  L K       + + +A    G +    T   +T GVWQ WWW  ++   +LI +++   E
Sbjct:  131 GFVTLSLLLFDQITGYALIDLFDPLDEGQHPEKRQHIIYQNLSHSVTILALLVPIITPRLWQEGRTGKGLAVIFLVGVIVSAILGKLAAGALAVGAAALFMIIARHWPKRAVKAVMALAIASIMFAPLAGYAMQKVPQSTKENVADSWEHRIEMWSYVSEKIGEKPFFGHGFDASRTFD----RKYDGMSVNGKPYEQTIISLHPHNSGLQVWVETGAIGALLFSLFLFMLQKKLTSYVEKDSYSAVYIAGYVAAALTICTLTYGVWQEWWWGALIFIGALIPIVKMNTE 416          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A2G2QZU6_9PROT (Uncharacterized protein n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QZU6_9PROT)

HSP 1 Score: 121 bits (304), Expect = 4.500e-28
Identity = 92/283 (32.51%), Postives = 133/283 (47.00%), Query Frame = 1
Query:   55 LLADAASGYALSLFGDPVRAGEDPVRRLGDAEMNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLL----------ALLKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQP 873
            +L D  + ++L+L  DP+  GE+  +R GD   N+            PV+ LL  + + G I A+   + +  S    + S     L  A  F  LA  +PK  +   F  A   ILLAPL  F S  + PE    LP SWE R+  W   +  I + P IG+GFD+ R F+  T       D  ++S+HPHN GL +W+E G VG +LA   L            L KP L          A++GL    A   +++ GVWQ WW   I+ S + I L+++P
Sbjct:  138 VLIDLLANHSLTLLVDPLAEGENFAQRSGDMTQNISHAVSVLVLLAAPVSMLLWQKGRFGKISAVMIIVLIGFSTHKANASAAQXGLLAALIFMGLASFKPKFVLXSAFFTAGACILLAPLFAFXSGKLSPETRTXLPFSWEERVFNWEALYQKILEHPFIGHGFDAVRTFNG-THTIRGFEDRALVSLHPHNAGLHLWVEVGFVGVVLACLALYLGARTLTGSEGLSKPRL---------IAASGLCAATAVMASLSYGVWQDWWXXXIIFSSTSIVLIKKP 410          
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Match: A0A8J6LQU3_9PROT (Uncharacterized protein n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6LQU3_9PROT)

HSP 1 Score: 116 bits (290), Expect = 3.580e-26
Identity = 81/238 (34.03%), Postives = 121/238 (50.84%), Query Frame = 1
Query:  154 NLGRGQVSYAQFLWPVAALLLVRFKQG-WI-LALGAFLTLIVSAQFNHLSIVIPALGLAGGFALLAWRRPKLGISLGFGLAI---MTILLAPLVGFISSHIDPELMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGRDITVMSMHPHNIGLQIWLETGIVGALLASGFLLAL-LKPTLKLCTRPAAAFASTGLLVTVATSGAVTVGVWQHWWWALIVLSVS 849
            N+GRG   +     P AA+ L  F+ G W+ LALGA   + ++  F+ ++  +  +  AG FAL  WR P+  +   FG A+   + I+ AP+V   +  + PE+   +  SWE R   W Y+ +LI Q P  G+G D++R FD++   A  G D+  M +HPH+  LQ+WLE G+VGALL +    A  +    +     A                 V+ GVWQ WWWA   L+ S
Sbjct:  158 NVGRGASVFVVLAGPAAAMALAHFRHGRWVALALGAA-AVSIALSFDMIANAVALVAAAGAFALACWR-PRSAL---FGAALAAALWIVFAPMVITAAGPLSPEMRADMAFSWEWRWETWTYARELIVQRPFQGWGMDASRTFDQIV--AMRGFDLERMPLHPHSAALQLWLELGMVGALLGAAAACARGMSRWSEAAWTSAXXXXXXXXXXXXXXXSFVSYGVWQEWWWATAFLAAS 388          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104352.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167AC6583.550e-10660.45O-antigen ligase family protein n=1 Tax=Litorimona... [more]
A0A8J3CQU2_9PROT1.080e-5740.61O-antigen polymerase n=1 Tax=Algimonas arctica Tax... [more]
UPI00042211A63.150e-5038.18O-antigen ligase family protein n=1 Tax=Hellea bal... [more]
A0A2G2J2P8_9PROT5.630e-4236.18Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A2G2MQY4_9PROT9.840e-4236.27Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A2G2GJ66_9PROT4.200e-3935.56Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A7Y1X6G6_9PROT1.690e-3733.56O-antigen ligase family protein n=2 Tax=Bacteria T... [more]
A0A848V2G7_9PROT1.280e-3533.45O-antigen ligase family protein n=1 Tax=Hellea sp.... [more]
A0A2G2QZU6_9PROT4.500e-2832.51Uncharacterized protein n=2 Tax=Robiginitomaculum ... [more]
A0A8J6LQU3_9PROT3.580e-2634.03Uncharacterized protein n=2 Tax=Euryhalocaulis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104352contigP-canaliculata_contig104352:32..928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score181.8
Seed ortholog evalue4.7e-43
Seed eggNOG ortholog1121948.AUAC01000004_gene202
EggNOG free text desc.O-Antigen ligase
EggNOG OGs1N8BD@1224,2UG6G@28211,43Y4C@69657,COG3307@1,COG3307@2
COG Functional cat.M
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size897
Cds size897
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.3601377-CDS-P-canaliculata_contig104352:31..9281622815614.3601377-CDS-P-canaliculata_contig104352:31..928Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104352 32..928 +
1693494166.8878932-CDS-P-canaliculata_contig104352:31..9281693494166.8878932-CDS-P-canaliculata_contig104352:31..928Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104352 32..928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104352.598.1prot_P-canaliculata_contig104352.598.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104352 32..928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104352.598.1

>prot_P-canaliculata_contig104352.598.1 ID=prot_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=299bp
KPAIIWAVIGAGILGAALLLADAASGYALSLFGDPVRAGEDPVRRLGDAE
MNLGRGQVSYAQFLWPVAALLLVRFKQGWILALGAFLTLIVSAQFNHLSI
VIPALGLAGGFALLAWRRPKLGISLGFGLAIMTILLAPLVGFISSHIDPE
LMRRLPLSWEHRLRMWAYSWDLIRQTPLIGYGFDSARVFDELTFRAPDGR
DITVMSMHPHNIGLQIWLETGIVGALLASGFLLALLKPTLKLCTRPAAAF
ASTGLLVTVATSGAVTVGVWQHWWWALIVLSVSLICLLRQPIETVDVL*
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mRNA from alignment at P-canaliculata_contig104352:32..928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104352.598.1 ID=mRNA_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at P-canaliculata_contig104352:32..928+ (Pelvetia canaliculata dioecious)
AAGCCAGCCATCATTTGGGCCGTGATCGGTGCGGGGATACTCGGCGCAGC TCTGCTTCTTGCCGATGCAGCGAGTGGATATGCGCTGTCGCTGTTTGGGG ATCCCGTGCGTGCGGGCGAAGATCCCGTGCGGCGACTCGGCGATGCGGAA ATGAATTTGGGGCGCGGCCAAGTCAGTTATGCTCAGTTTTTATGGCCGGT GGCAGCCTTACTGCTCGTGCGGTTCAAGCAAGGTTGGATATTGGCGCTGG GGGCCTTTCTGACGCTCATCGTCTCTGCCCAATTTAACCATCTGTCGATT GTGATTCCGGCCTTGGGATTAGCGGGAGGCTTTGCCTTGCTCGCGTGGCG GCGGCCTAAACTCGGGATAAGTTTGGGATTCGGTCTCGCCATCATGACGA TCCTTTTAGCCCCGCTCGTCGGCTTTATCTCCTCTCACATAGACCCGGAG TTGATGCGCCGGCTTCCGCTGTCATGGGAACACCGTTTGCGCATGTGGGC CTATAGCTGGGATCTCATCCGGCAGACCCCGCTCATTGGTTACGGCTTTG ACTCGGCCCGCGTCTTTGACGAGCTGACATTCCGCGCGCCGGACGGCCGA GACATCACCGTCATGTCCATGCACCCGCATAATATTGGACTTCAAATCTG GCTGGAGACCGGCATTGTTGGGGCGTTATTGGCGTCCGGATTTCTTCTCG CCTTGCTCAAACCCACGCTCAAACTTTGCACCCGGCCCGCGGCGGCTTTC GCATCCACAGGCCTATTGGTGACTGTCGCGACGAGCGGCGCGGTAACAGT CGGAGTCTGGCAGCATTGGTGGTGGGCTTTGATCGTTTTGTCCGTCAGTT TGATCTGTCTTCTGCGCCAACCCATTGAGACCGTTGACGTTTTGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104352:32..928+

>mRNA_P-canaliculata_contig104352.598.1 ID=mRNA_P-canaliculata_contig104352.598.1|Name=mRNA_P-canaliculata_contig104352.598.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1794bp|location=Sequence derived from alignment at P-canaliculata_contig104352:32..928+ (Pelvetia canaliculata dioecious)
AAGCCAGCCATCATTTGGGCCGTGATCGGTGCGGGGATACTCGGCGCAGC
TCTGCTTCTTGCCGATGCAGCGAGTGGATATGCGCTGTCGCTGTTTGGGG
ATCCCGTGCGTGCGGGCGAAGATCCCGTGCGGCGACTCGGCGATGCGGAA
ATGAATTTGGGGCGCGGCCAAGTCAGTTATGCTCAGTTTTTATGGCCGGT
GGCAGCCTTACTGCTCGTGCGGTTCAAGCAAGGTTGGATATTGGCGCTGG
GGGCCTTTCTGACGCTCATCGTCTCTGCCCAATTTAACCATCTGTCGATT
GTGATTCCGGCCTTGGGATTAGCGGGAGGCTTTGCCTTGCTCGCGTGGCG
GCGGCCTAAACTCGGGATAAGTTTGGGATTCGGTCTCGCCATCATGACGA
TCCTTTTAGCCCCGCTCGTCGGCTTTATCTCCTCTCACATAGACCCGGAG
TTGATGCGCCGGCTTCCGCTGTCATGGGAACACCGTTTGCGCATGTGGGC
CTATAGCTGGGATCTCATCCGGCAGACCCCGCTCATTGGTTACGGCTTTG
ACTCGGCCCGCGTCTTTGACGAGCTGACATTCCGCGCGCCGGACGGCCGA
GACATCACCGTCATGTCCATGCACCCGCATAATATTGGACTTCAAATCTG
GCTGGAGACCGGCATTGTTGGGGCGTTATTGGCGTCCGGATTTCTTCTCG
CCTTGCTCAAACCCACGCTCAAACTTTGCACCCGGCCCGCGGCGGCTTTC
GCATCCACAGGCCTATTGGTGACTGTCGCGACGAGCGGCGCGGTAACAGT
CGGAGTCTGGCAGCATTGGTGGTGGGCTTTGATCGTTTTGTCCGTCAGTT
TGATCTGTCTTCTGCGCCAACCCATTGAGACCGTTGACGTTTTGTAAAAG
CCAGCCATCATTTGGGCCGTGATCGGTGCGGGGATACTCGGCGCAGCTCT
GCTTCTTGCCGATGCAGCGAGTGGATATGCGCTGTCGCTGTTTGGGGATC
CCGTGCGTGCGGGCGAAGATCCCGTGCGGCGACTCGGCGATGCGGAAATG
AATTTGGGGCGCGGCCAAGTCAGTTATGCTCAGTTTTTATGGCCGGTGGC
AGCCTTACTGCTCGTGCGGTTCAAGCAAGGTTGGATATTGGCGCTGGGGG
CCTTTCTGACGCTCATCGTCTCTGCCCAATTTAACCATCTGTCGATTGTG
ATTCCGGCCTTGGGATTAGCGGGAGGCTTTGCCTTGCTCGCGTGGCGGCG
GCCTAAACTCGGGATAAGTTTGGGATTCGGTCTCGCCATCATGACGATCC
TTTTAGCCCCGCTCGTCGGCTTTATCTCCTCTCACATAGACCCGGAGTTG
ATGCGCCGGCTTCCGCTGTCATGGGAACACCGTTTGCGCATGTGGGCCTA
TAGCTGGGATCTCATCCGGCAGACCCCGCTCATTGGTTACGGCTTTGACT
CGGCCCGCGTCTTTGACGAGCTGACATTCCGCGCGCCGGACGGCCGAGAC
ATCACCGTCATGTCCATGCACCCGCATAATATTGGACTTCAAATCTGGCT
GGAGACCGGCATTGTTGGGGCGTTATTGGCGTCCGGATTTCTTCTCGCCT
TGCTCAAACCCACGCTCAAACTTTGCACCCGGCCCGCGGCGGCTTTCGCA
TCCACAGGCCTATTGGTGACTGTCGCGACGAGCGGCGCGGTAACAGTCGG
AGTCTGGCAGCATTGGTGGTGGGCTTTGATCGTTTTGTCCGTCAGTTTGA
TCTGTCTTCTGCGCCAACCCATTGAGACCGTTGACGTTTTGTAA
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