mRNA_P-canaliculata_contig104331.595.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104331.595.1
Unique NamemRNA_P-canaliculata_contig104331.595.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: A0A7C4II57_9BACT (Tad domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C4II57_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 5.260e-20
Identity = 84/241 (34.85%), Postives = 120/241 (49.79%), Query Frame = 1 
Query:    4 GFVGIESADLRNNIGTNSYNSDNGNYGGSNQLNNGDVCSEGPVTLASGADIVGDAM-GSSVTIAQGSG-ASISGTQTQSPAVLNYPSVDFSQ-VNDNKTSLINTESPPPYGAKFYNESTRDLIIDQGKNLTLSEGTYRFRDLFLRGGSKLSIQGEVKIYIEREMIFDNGTVANLSQVPANMQIFV-GDGPVNIQGGNQLYASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESL 714
            G VGI+   +     T+SY+SD G Y  +N+  NG + S GP+ L    DI GDA  G + T    +G   ISG        L +P VD S   N+N  ++I    PP Y +K   + T       G   T+  GTY F D  L G + L + G V +Y+   +    G V     V AN+ I V G G V++ G + LYA +YAP+A+V ++    F+G+++GKTL   G   +  DE L
Sbjct:  172 GIVGIDWIRMNGTPITDSYDSDLGPYSDANRGENGTITSNGPIRLIGTTDIYGDAQPGPAETDVDANGNVYISGDVEPLTEKLVFPPVDASPYANNNNNAVI----PPAYLSKKGFKMT-------GGTWTVPAGTYYFSDFDLGGNATLIMAGPVTLYVTGSLKIA-GNVETSGSVAANLSIQVAGRGGVDLTGTSNLYADVYAPEANVTISGTHDFFGAVVGKTLTTGGTGRIHHDEQL 400
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: A0A2V9ILD6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ILD6_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.560e-7
Identity = 40/127 (31.50%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:  355 DLIIDQGKNLTLSEGTYRFRDLFLRGGSKLSIQGEVKIYI------EREMIFDNGTVANLSQVPANMQI-FVGDGPVNIQGGNQLYASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESL 714
            +L+   G    LS GTY         G+   + G V I I      +  M F + T+AN S  P+N+   + G   +++ GG + YA +YAP+A V +  G  +YG+ I  +L   GG+ L +D +L
Sbjct:  268 NLVFTGGHTAQLSAGTYNVNSFTKWAGTMKIMSGPVVINIAGIGISKDVMNFSSATIANPSSDPSNLTFNYAGTVNMDLTGGAESYALLYAPNAPVTIGGGGAWYGAGIAGSLTLTGGSRLHYDRAL 394
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: A0A518BEV4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BEV4_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.300e-6
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = 1 
Query:  346 STRDLIIDQGKNLTLSEGTYRFRD-LFLRGGSKLSI---QGEVKIYIEREMIFDNGT-VANLSQVPANMQI-FVGDGPVNIQGGNQL------------YASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESLAVESSA 732
            S   L++ +   LTL+ GT    D L L  G++L I   +G V+I++   ++   GT + NL+Q P  + I ++GDG V++ G   L            +  +YAP+AD+ +AN + + G++    L     A + FD +L  E  A
Sbjct:  280 SIASLLLGESGVLTLAAGTRLVVDSLVLEDGARLEIDSSEGPVEIWVRDTLLVGAGTTLENLTQDPTGLSIIYLGDGQVDLDGDGALDRALDLDSVSSFFGQLYAPEADLRIANQAQYTGAVAANQLTVGQDASVLFDNALLREGEA 426
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: UPI001C7EA7D0 (hypothetical protein n=1 Tax=Shewanella sairae TaxID=190310 RepID=UPI001C7EA7D0)

HSP 1 Score: 55.1 bits (131), Expect = 4.700e-5
Identity = 45/152 (29.61%), Postives = 76/152 (50.00%), Query Frame = 1 
Query:  316 PPYGAKFYNESTRDLIIDQGK---NLTLSEG----TYRFRDLFLRGGSKLSI--QGEVKIYIEREMIFDNGTVANLSQ---VPANMQIFV------GDGPVNIQGG-NQLYASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESL 714
            P   A F  +    L+ D  K   N+ +  G     Y     +L+G S L+I     + + ++  +I  +G+  N        A + +F       G G V+I GG  Q+YA+IYAP +DV++A+   F GS++GK ++ +G  G+ +DE+L
Sbjct:  466 PSTNATFLGDQHNILMYDNVKINGNIEIKPGHNVVLYAKGGFYLQGASTLTIPDNSSLTLIVKGALIIGSGSTINTPTNGLTQAGIPVFSIYSSYSGTG-VDILGGVEQIYAAIYAPLSDVEIASDVAFKGSVLGKKVDISGAGGIHYDEAL 616
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: A0A1V5STE9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Omnitrophica bacterium ADurb.Bin277 TaxID=1852853 RepID=A0A1V5STE9_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 6.910e-5
Identity = 60/244 (24.59%), Postives = 96/244 (39.34%), Query Frame = 1 
Query:    1 SGFVGIESADLRNNIGTNSYNSDNGNYGGSNQLNNGDVCSE--GP--VTLASGADIVGDAMGSSVTIAQGSGASISGTQTQSPAVLNYPSVDFSQV-NDNKTSLINTESPPPYGAKFYNESTRDLIIDQGKNLTLSEGTYRFRDLFLRGGSKLSIQGEVKIYIEREMIFDNGTVANLSQVPANMQIFV-GDGPVNIQGGNQLYASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESL 714
            SG    +S  +  N  T+SY+S NG YGGSN   NG + +   GP  VTL+    I G             G ++  T++ S  V            + N   +I +++  P  A      +  L +       L  GTY F  + + G ++L   G V IY++  +      +A     P N+ ++  G+  V+  G    Y ++YAP                I +     G   + FDE+L
Sbjct:  144 SGVFATDSIYMSGNAQTDSYDSRNGAYGGSNVAYNGSIETNTTGPKKVTLSGNVMIRG-------------GVTVGPTESPSSVVSRXXXXXXXXXXSSNPAPVIFSDAVAPVSA------SGGLKLSGNTTYYLMPGTYHFTSMSITGNARLVPTGPVSIYVDGTIQIAGNGIATSENCPPNLLLYATGNSNVSFSGNASFYGAVYAPXXXXXXXXXXXXXXXXIARDYKNTGNGHIHFDEAL 368
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BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Match: UPI00200FEB54 (pilus assembly PilX N-terminal domain-containing protein n=1 Tax=Shewanella pneumatophori TaxID=314092 RepID=UPI00200FEB54)

HSP 1 Score: 54.3 bits (129), Expect = 8.480e-5
Identity = 44/152 (28.95%), Postives = 76/152 (50.00%), Query Frame = 1 
Query:  316 PPYGAKFYNESTRDLIIDQGK---NLTLSEG----TYRFRDLFLRGGSKLSIQGE--VKIYIEREMIFDNGTVANLSQ---------VPANMQIFVGDGPVNIQGG-NQLYASIYAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESL 714
            P   A+F  +S   L+ D      N+ +  G     Y   + +L G S L+I  +  + + ++  +I  +G+  N            V +    + G G V+I GG  Q+YA+IYAP +DV++A+   F GS++GK +  +G  G+ +DE+L
Sbjct:  471 PATSARFLGQSKNILMYDNVNIKGNIEVKAGHNVVMYAKGNFYLSGASTLTIPDDSSLTLIVKGALIIGSGSTINTPTKGLTKDGIPVFSIYSSYSGTG-VDILGGVEQIYAAIYAPLSDVNIASAVDFKGSVLGKKVEVSGAGGIHYDEAL 621
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104331.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7C4II57_9BACT5.260e-2034.85Tad domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A2V9ILD6_9BACT2.560e-731.50Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A518BEV4_9BACT2.300e-629.93Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001C7EA7D04.700e-529.61hypothetical protein n=1 Tax=Shewanella sairae Tax... [more]
A0A1V5STE9_9BACT6.910e-524.59Uncharacterized protein n=1 Tax=Candidatus Omnitro... [more]
UPI00200FEB548.480e-528.95pilus assembly PilX N-terminal domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104331contigP-canaliculata_contig104331:163..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size759
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.1265998-CDS-P-canaliculata_contig104331:162..9211622815614.1265998-CDS-P-canaliculata_contig104331:162..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104331 163..921 +
1693494166.7966988-CDS-P-canaliculata_contig104331:162..9211693494166.7966988-CDS-P-canaliculata_contig104331:162..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104331 163..921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104331.595.1prot_P-canaliculata_contig104331.595.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104331 163..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104331.595.1

>prot_P-canaliculata_contig104331.595.1 ID=prot_P-canaliculata_contig104331.595.1|Name=mRNA_P-canaliculata_contig104331.595.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=253bp
SGFVGIESADLRNNIGTNSYNSDNGNYGGSNQLNNGDVCSEGPVTLASGA
DIVGDAMGSSVTIAQGSGASISGTQTQSPAVLNYPSVDFSQVNDNKTSLI
NTESPPPYGAKFYNESTRDLIIDQGKNLTLSEGTYRFRDLFLRGGSKLSI
QGEVKIYIEREMIFDNGTVANLSQVPANMQIFVGDGPVNIQGGNQLYASI
YAPDADVDVANGSGFYGSIIGKTLNAAGGAGLFFDESLAVESSAGARAKL
VQ*
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mRNA from alignment at P-canaliculata_contig104331:163..921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104331.595.1 ID=mRNA_P-canaliculata_contig104331.595.1|Name=mRNA_P-canaliculata_contig104331.595.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at P-canaliculata_contig104331:163..921+ (Pelvetia canaliculata dioecious)
AGCGGATTTGTCGGCATCGAGTCAGCGGACTTGCGAAACAACATCGGCAC
CAACAGTTATAATTCAGATAACGGCAATTATGGTGGCTCAAACCAATTGA
ATAACGGAGACGTTTGCAGCGAAGGACCGGTAACGTTGGCTTCTGGTGCG
GACATCGTCGGCGATGCGATGGGATCTTCGGTGACGATTGCTCAAGGAAG
CGGCGCGTCGATCTCCGGCACTCAAACGCAGAGTCCTGCTGTTCTCAATT
ATCCATCCGTTGACTTCTCTCAAGTGAACGACAACAAAACTTCTCTTATC
AATACAGAGTCACCACCGCCATACGGAGCCAAATTCTATAACGAATCCAC
GAGAGACTTGATTATCGACCAAGGAAAAAATCTTACGTTGAGCGAGGGCA
CCTACCGCTTTCGTGACTTATTTCTACGCGGTGGATCAAAGCTAAGTATT
CAAGGCGAAGTCAAAATCTACATCGAACGGGAAATGATTTTTGATAATGG
AACCGTTGCCAACCTCAGTCAAGTTCCTGCCAATATGCAGATATTTGTGG
GCGATGGGCCGGTCAACATCCAAGGCGGCAATCAGTTGTACGCTTCGATC
TATGCTCCTGATGCCGACGTCGACGTCGCTAATGGTTCAGGATTTTACGG
ATCGATCATCGGAAAAACGCTCAACGCAGCCGGTGGTGCTGGATTGTTTT
TTGACGAATCGCTGGCTGTCGAATCAAGCGCCGGTGCGAGAGCAAAATTG
GTTCAGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104331:163..921+

>mRNA_P-canaliculata_contig104331.595.1 ID=mRNA_P-canaliculata_contig104331.595.1|Name=mRNA_P-canaliculata_contig104331.595.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at P-canaliculata_contig104331:163..921+ (Pelvetia canaliculata dioecious)
AGCGGATTTGTCGGCATCGAGTCAGCGGACTTGCGAAACAACATCGGCAC
CAACAGTTATAATTCAGATAACGGCAATTATGGTGGCTCAAACCAATTGA
ATAACGGAGACGTTTGCAGCGAAGGACCGGTAACGTTGGCTTCTGGTGCG
GACATCGTCGGCGATGCGATGGGATCTTCGGTGACGATTGCTCAAGGAAG
CGGCGCGTCGATCTCCGGCACTCAAACGCAGAGTCCTGCTGTTCTCAATT
ATCCATCCGTTGACTTCTCTCAAGTGAACGACAACAAAACTTCTCTTATC
AATACAGAGTCACCACCGCCATACGGAGCCAAATTCTATAACGAATCCAC
GAGAGACTTGATTATCGACCAAGGAAAAAATCTTACGTTGAGCGAGGGCA
CCTACCGCTTTCGTGACTTATTTCTACGCGGTGGATCAAAGCTAAGTATT
CAAGGCGAAGTCAAAATCTACATCGAACGGGAAATGATTTTTGATAATGG
AACCGTTGCCAACCTCAGTCAAGTTCCTGCCAATATGCAGATATTTGTGG
GCGATGGGCCGGTCAACATCCAAGGCGGCAATCAGTTGTACGCTTCGATC
TATGCTCCTGATGCCGACGTCGACGTCGCTAATGGTTCAGGATTTTACGG
ATCGATCATCGGAAAAACGCTCAACGCAGCCGGTGGTGCTGGATTGTTTT
TTGACGAATCGCTGGCTGTCGAATCAAGCGCCGGTGCGAGAGCAAAATTG
GTTCAGTAAAGCGGATTTGTCGGCATCGAGTCAGCGGACTTGCGAAACAA
CATCGGCACCAACAGTTATAATTCAGATAACGGCAATTATGGTGGCTCAA
ACCAATTGAATAACGGAGACGTTTGCAGCGAAGGACCGGTAACGTTGGCT
TCTGGTGCGGACATCGTCGGCGATGCGATGGGATCTTCGGTGACGATTGC
TCAAGGAAGCGGCGCGTCGATCTCCGGCACTCAAACGCAGAGTCCTGCTG
TTCTCAATTATCCATCCGTTGACTTCTCTCAAGTGAACGACAACAAAACT
TCTCTTATCAATACAGAGTCACCACCGCCATACGGAGCCAAATTCTATAA
CGAATCCACGAGAGACTTGATTATCGACCAAGGAAAAAATCTTACGTTGA
GCGAGGGCACCTACCGCTTTCGTGACTTATTTCTACGCGGTGGATCAAAG
CTAAGTATTCAAGGCGAAGTCAAAATCTACATCGAACGGGAAATGATTTT
TGATAATGGAACCGTTGCCAACCTCAGTCAAGTTCCTGCCAATATGCAGA
TATTTGTGGGCGATGGGCCGGTCAACATCCAAGGCGGCAATCAGTTGTAC
GCTTCGATCTATGCTCCTGATGCCGACGTCGACGTCGCTAATGGTTCAGG
ATTTTACGGATCGATCATCGGAAAAACGCTCAACGCAGCCGGTGGTGCTG
GATTGTTTTTTGACGAATCGCTGGCTGTCGAATCAAGCGCCGGTGCGAGA
GCAAAATTGGTTCAGTAA
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