mRNA_P-canaliculata_contig10432.592.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10432.592.1
Unique NamemRNA_P-canaliculata_contig10432.592.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A6H5JYC7_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC7_9PHAE)

HSP 1 Score: 424 bits (1091), Expect = 5.080e-145
Identity = 211/306 (68.95%), Postives = 240/306 (78.43%), Query Frame = 2
Query:   26 IMSVALFSLLRKGGALRGLPVLKSFSGWPFRNGLPRTRPCSGMDAAAVAEGPEGTDLPEVMHRVVEEDELKAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAEAEWEKPG 943
            +MS+AL  +LR+G A R   +         + G      C+   AA    GPEGTDLP VMHR V  +ELKAEVI+VGD+HGC+GEMV+LL+RCGYRLGN+EDRERFSVVLAGDLVNKGPG+ +VVRTAR+EGFLAVRGNHDNF LAA TGVGRFS         K PPWV++LSSDD++W+SALPYTLSFPS+G I+VHAGLVPGVPL  QD  AMSCMRNVVE E G GYEPR    +G+ WAKAWKGPEHVYFGHDA RGFQ+E FATGLDTGCVYGRSLTA+VLPG R+VCVPAEA W  PG
Sbjct:   16 VMSLALLCMLRRGVAFRSGSIAALSRTLCKQRGQTARGDCA---AAGRHAGPEGTDLPGVMHRTVSAEELKAEVIVVGDIHGCYGEMVSLLERCGYRLGNKEDRERFSVVLAGDLVNKGPGSVDVVRTAREEGFLAVRGNHDNFALAAATGVGRFSPKEGEGGGAKPPPWVEQLSSDDLQWISALPYTLSFPSLGCIIVHAGLVPGVPLNGQDAEAMSCMRNVVEMEGGGGYEPRTLPDQGLAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEAMWSAPG 318          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A813JGW0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JGW0_POLGL)

HSP 1 Score: 205 bits (522), Expect = 1.050e-59
Identity = 113/243 (46.50%), Postives = 151/243 (62.14%), Query Frame = 2
Query:  179 PEGTDLPEVMHRVVEEDEL----KAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDAL-TLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEG-IPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVL 889
            P GT LP + HR VE  E+       ++IVGDVHGC  E+ +LLK   +      D+ R ++VL GDLVNKGP + EV+  AR  G   VRGNH++ +L A  GVGR+++ L +  +  K      ++ ++ VRW+  LP+TLS P +  +VVHAGL+PGVPLE+Q    M  +R+V  S++  G+E     +EG   WAK W GPEHV FGHDA R  Q   FATGLDTGC YG  LTA+V+
Sbjct:   29 PSGTPLPLISHRRVERHEVCNQPGGRLLIVGDVHGCAEELRSLLKAESF------DKGRDTLVLVGDLVNKGPSSGEVIAIARDNGAFCVRGNHEDELLEAWHGVGRYANGLGSYRQNAKG-----QVDAEAVRWVQELPFTLSLPWLKLVVVHAGLIPGVPLEKQKVKDMMWVRDVRPSDSDAGWEGLETPQEGSYSWAKVWSGPEHVVFGHDAKRKLQTHEFATGLDTGCCYGFQLTALVV 260          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A4D9DA84_9STRA (Metallophos domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA84_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.110e-59
Identity = 136/342 (39.77%), Postives = 178/342 (52.05%), Query Frame = 2
Query:   23 VIMSVALFSLLR-----KGGALRGLPVLKSFSGWPFRNGLPRTRPCSGMDAAAVAEGPE-------------GTDLPEVMHRVVEEDELKAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETG-----IGYEPRVNAKEGIPWAKAW--KGPE-----------HVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAEAEWEKP 940
            ++MS+ L SLLR        A +  P+L    G P    +P     S   A++V+  P              GT +P  +HR++  DE K  V++VGDVHGC  E+  LL +  Y           SVVL GDLVNKGP +AE V+  R +GF +VRGNHD+  LAA   VG+F+   +L +      +V  L   DV WL +LPYTLS   +G +VVHAGL+PG PL+ Q    MS +R+V  +E G     +G E      E  PWAK W  +G E           H+ FGHDA RG Q    ATGLDTGC YGR LT  +LPG   + V A   ++ P
Sbjct:   24 MVMSLMLLSLLRYANNRPAAAFQAAPILLKRLGLP----VPSFSSSSLFSASSVSAVPHSLPSFANETLTPAGTRMPACVHRILTRDEAKERVLVVGDVHGCLEELQALLVKANYTAAKD------SVVLVGDLVNKGPLSAETVKWCRTQGFYSVRGNHDDSALAAYFRVGKFTGVSSLPQAYD---FVAALDEADVAWLDSLPYTLSIEHLGVVVVHAGLLPGRPLQMQQAADMSRIRSVKRAEEGGEGTWVGVEYIPENGEAEPWAKVWSQEGKECEGGEGSTDARHLLFGHDAKRGLQVFRKATGLDTGCCYGRELTLAILPGEERISVKALKAYQVP 352          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A5D6Y7R9_9STRA (Metallophos domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7R9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.060e-58
Identity = 126/259 (48.65%), Postives = 153/259 (59.07%), Query Frame = 2
Query:  194 LPEVMHRVVEEDELKAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAA----TTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNV--VESETGI--------GYEPRVNAKEG---IPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPA 919
            LP V+HRV E     A V++VGDVH C  E+  LL+ C +         R ++VL GDLVNKGP   EVVR AR+   L VRGNHD+  LAA     TG G   DA   + R     +V++LS +DVR+L  LP+TL+ P+   IVVHAGLVPGVPL  Q    M  MR +  V+ + GI          E R  A+E      WA  W+GP+HV+FGHDAV G QRE FATGLDTGC YGR LTA +LP   IV V A
Sbjct:   20 LPAVVHRVAELP-ATARVVVVGDVHACADELQLLLRACAFNAA------RDTLVLVGDLVNKGPKPVEVVRFAREANALCVRGNHDDAALAAYYAWRTGGGA-RDASDSKYR-----YVEQLSPEDVRFLEELPFTLTLPAQNAIVVHAGLVPGVPLHAQRPLDMYKMRFIEPVDQDGGIDEPVREWAALETRAAAREAGQLFQWATQWRGPQHVFFGHDAVPGLQREAFATGLDTGCCYGRQLTACILPAREIVQVQA 265          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: UPI0006B0D630 (uncharacterized protein LOC106461977 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0D630)

HSP 1 Score: 201 bits (510), Expect = 3.540e-58
Identity = 113/262 (43.13%), Postives = 152/262 (58.02%), Query Frame = 2
Query:  185 GTDLPEVMHRVVEEDELK--AEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGF--LAVRGNHDNFILAATTGVGRFSDALTLEERL-KSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGI--GYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPG---GRIVCVPAEAEWEKP 940
            G   P V+H++V E+ +K   EV ++GDVHGC  E++ LL++          ++    +  GDLVNKGP + EVVR  R   +  L VRGNHD  +L        +   ++ E  L K   W+ E S DD+ +L  LPYT++ PS+  IVVHAGLVPG+P+ERQD   M  MRN+   +     G +   + +EG PW   W GPEHVYFGHDA R  Q   +ATGLDTGCVYG+ LT + + G   G  V V A+  +EKP
Sbjct:   25 GLRFPPVLHKIVTENFIKNFKEVFVIGDVHGCFDELIELLEKADVT------KDSCLKIFVGDLVNKGPKSLEVVRLLRNTPYSTLCVRGNHDEVVLEL------YHKKVSGEHHLTKHSAWINEFSEDDIDYLQNLPYTITLPSLNVIVVHAGLVPGLPMERQDPRHMVSMRNLTIKDYFWEGGIQATNSNQEGEPWGSLWPGPEHVYFGHDARRLLQLYSYATGLDTGCVYGKELTGVFIAGPRKGTFVSVTAQHMYEKP 274          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A8K1FHR1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHR1_PYTOL)

HSP 1 Score: 197 bits (500), Expect = 6.330e-57
Identity = 111/253 (43.87%), Postives = 151/253 (59.68%), Query Frame = 2
Query:  194 LPEVMHRVVEEDELKAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTG-VGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETG---IGYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAEAEWEKP 940
            LP  MH +V +  L + VIIVGD+HGC  E+V LL    +      D  + +++L GDLVNKGP + EVV+ AR++  L VRGNHD+  L+A         DAL  +       +V+  S +D+R+L  LP+T+S P+   ++VHAG+ PGV LE Q    M  MR +    T      +E + +  E + WA  WKGP+H+YFGHDA  G Q+E FATGLDTGC YGR LTAI+LP   +V V A A++  P
Sbjct:   15 LPSRMH-LVADIPLTSRVIIVGDIHGCFDELVELLAVAEF------DESKDTLILVGDLVNKGPKSPEVVQFARQKNALCVRGNHDDAALSAYYAWKSGGDDALPAKYG-----YVKSFSEEDIRYLEELPFTISLPAQNAMIVHAGIKPGVALEGQHPIDMYKMRFLEYESTNEEPAAFEVKPSDSEVVQWATQWKGPQHIYFGHDAKAGLQQEAFATGLDTGCCYGRQLTAIILPTRELVAVKARAQYSAP 255          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: A0A084SKV9_9DELT (Metallophosphatase n=3 Tax=Archangium TaxID=47 RepID=A0A084SKV9_9DELT)

HSP 1 Score: 194 bits (494), Expect = 1.690e-56
Identity = 108/225 (48.00%), Postives = 131/225 (58.22%), Query Frame = 2
Query:  248 IIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAE 922
            + +GDVHGC  E+  LL  CGYR G +       VVL GDLV KGP +A VVR AR+ GFLAVRGNHD  +L   TG  +      L+   K    +  L  +D ++L +LP    FP +   VVH GLVPGVPLE Q    M  +R++         EP      G+PWA  WKGPE V FGHDA+RG QR P+A GLD+GCVYG  LTA VLP GR   V A+
Sbjct:    5 LFIGDVHGCAEELDALLHACGYRRGER-------VVLVGDLVAKGPDSAGVVRRAREHGFLAVRGNHDEHVLRWHTG--KMPQGKKLKREHKQV--LNTLEDEDWKYLESLPVHRHFPELNVRVVHGGLVPGVPLEEQKPELMLNLRSITPEG-----EPSKKMDAGVPWASLWKGPELVIFGHDALRGVQRHPYAIGLDSGCVYGHELTAYVLPEGRFYSVKAK 213          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: UPI001F297D89 (metallophosphoesterase n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F297D89)

HSP 1 Score: 193 bits (491), Expect = 4.580e-56
Identity = 107/224 (47.77%), Postives = 132/224 (58.93%), Query Frame = 2
Query:  248 IIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPA 919
            + +GDVHGC  E+  LL  CG+R G +       VVL GDLV KGP +A VVR AR++GFLAVRGNHD  +L   +G+      L  E R      +  L+ +D  +L A P    FP +  + VH GLVPGVPLE+Q    +  +R++ E  T     P      G PWA  W GPE V FGHDA+RG QR P A GLDTGCVYG  LTA V+P GR+V VPA
Sbjct:    4 LFIGDVHGCAQELDALLAACGWRRGER-------VVLVGDLVAKGPDSAGVVRRAREQGFLAVRGNHDAHVLRWHSGLAPEGKKLGKEHRQV----LDTLAPEDWTYLEAQPLYRRFPELNALAVHGGLVPGVPLEQQRPDELLNLRSIAEDGT-----PSKRVDGGAPWASLWPGPELVIFGHDAMRGLQRHPHAIGLDTGCVYGGQLTAYVMPEGRLVSVPA 211          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: UPI0014580908 (bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical]-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014580908)

HSP 1 Score: 194 bits (492), Expect = 1.360e-55
Identity = 113/259 (43.63%), Postives = 150/259 (57.92%), Query Frame = 2
Query:  194 LPEVMHRVVEEDEL-KAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQEDRER-FSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPP---WVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKE----GIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPG-GRIVCVPAEAEWEKP 940
            LP   H V+++D +    V ++GDVHGC+ E++ LL      L   E+++R    V  GDL+NKGP NA+V++  +     AVRGNHD  +L     + R +D          PP   W + L+  D  +L+ LPYT+S PS   +VVHAGLVPG+PLE QD T M  MRNV   E G      + A E    G  WA  W GPEHVYFGHDAVRGFQ  PFATGLDTGC+YG+ LT + + G  + + V ++  +  P
Sbjct:   27 LPLNCHLVLDDDVIGNRSVFVIGDVHGCYDELLELLS-----LAESEEQDRPILPVFVGDLINKGPKNADVLQKIKSMEAYAVRGNHDEAVLRQL--LNRRNDP-----EYAFPPKYKWCKSLTDSDADFLTKLPYTISIPSCNALVVHAGLVPGIPLENQDLTDMIVMRNVERKEDGS-----LKASEAHFVGEQWASKWPGPEHVYFGHDAVRGFQNFPFATGLDTGCLYGKELTGLFINGCNKRISVKSQKVYRPP 268          
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Match: UPI00193B9ED6 (metallophosphoesterase n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193B9ED6)

HSP 1 Score: 191 bits (486), Expect = 2.310e-55
Identity = 106/228 (46.49%), Postives = 135/228 (59.21%), Query Frame = 2
Query:  248 IIVGDVHGCHGEMVTLLKRCGYRLGNQEDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTGVGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHAGLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEGIPWAKAWKGPEHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAEAEW 931
            I +GDVHGC  E+  LL+ C YR G++       VVL GDLV KGP +A VVR AR+ G LAVRGNHD  +L       +  +   L+   K    +  L+ +D  +L +LP  L FP +   VVH GLVPGVPLE Q    M  +R++         EP    ++G PWA  WKGPE V FGHDA+RG QR P+A GLD+GCVYG++LTA VLP G    V A+ E+
Sbjct:    5 IFIGDVHGCAEELEALLRECDYRPGDR-------VVLVGDLVAKGPDSAGVVRLARERGLLAVRGNHDEHVLRWRAR--KMPEGKKLKREHKQV--LDTLADEDWAYLESLPLHLHFPELNVRVVHGGLVPGVPLEEQKPELMLNLRSITPEG-----EPSKKLEDGAPWASQWKGPELVIFGHDALRGVQRHPYAIGLDSGCVYGQNLTAYVLPEGHFYSVKAKREY 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10432.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYC7_9PHAE5.080e-14568.95Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A813JGW0_POLGL1.050e-5946.50Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A4D9DA84_9STRA1.110e-5939.77Metallophos domain-containing protein n=2 Tax=Mono... [more]
A0A5D6Y7R9_9STRA1.060e-5848.65Metallophos domain-containing protein n=1 Tax=Pyth... [more]
UPI0006B0D6303.540e-5843.13uncharacterized protein LOC106461977 n=1 Tax=Limul... [more]
A0A8K1FHR1_PYTOL6.330e-5743.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A084SKV9_9DELT1.690e-5648.00Metallophosphatase n=3 Tax=Archangium TaxID=47 Rep... [more]
UPI001F297D894.580e-5647.77metallophosphoesterase n=1 Tax=Myxococcus stipitat... [more]
UPI00145809081.360e-5543.63bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetri... [more]
UPI00193B9ED62.310e-5546.49metallophosphoesterase n=1 Tax=Archangium violaceu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10432contigP-canaliculata_contig10432:1653..4297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score196.8
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog400682.PAC_15725025
EggNOG free text desc.Calcineurin-like phosphoesterase
EggNOG OGs391PG@33154,3BR0B@33208,COG0639@1,KOG0371@2759
Ec32 ortholog descriptionMetallo-dependent phosphatase-like
Ec32 orthologEc-16_000830.1
COG Functional cat.T
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons5
Model size1261
Cds size939
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.7703269-UTR-P-canaliculata_contig10432:1652..16801622815613.7703269-UTR-P-canaliculata_contig10432:1652..1680Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10432 1653..1680 +
1693494166.5126324-UTR-P-canaliculata_contig10432:1652..16801693494166.5126324-UTR-P-canaliculata_contig10432:1652..1680Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10432 1653..1680 +
1622815613.8595805-UTR-P-canaliculata_contig10432:4003..42971622815613.8595805-UTR-P-canaliculata_contig10432:4003..4297Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10432 4004..4297 +
1693494166.601551-UTR-P-canaliculata_contig10432:4003..42971693494166.601551-UTR-P-canaliculata_contig10432:4003..4297Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10432 4004..4297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.7849936-CDS-P-canaliculata_contig10432:1680..18901622815613.7849936-CDS-P-canaliculata_contig10432:1680..1890Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 1681..1890 +
1693494166.5416923-CDS-P-canaliculata_contig10432:1680..18901693494166.5416923-CDS-P-canaliculata_contig10432:1680..1890Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 1681..1890 +
1622815613.7985814-CDS-P-canaliculata_contig10432:2525..26661622815613.7985814-CDS-P-canaliculata_contig10432:2525..2666Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 2526..2666 +
1693494166.5630572-CDS-P-canaliculata_contig10432:2525..26661693494166.5630572-CDS-P-canaliculata_contig10432:2525..2666Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 2526..2666 +
1622815613.8185623-CDS-P-canaliculata_contig10432:2810..29831622815613.8185623-CDS-P-canaliculata_contig10432:2810..2983Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 2811..2983 +
1693494166.5743914-CDS-P-canaliculata_contig10432:2810..29831693494166.5743914-CDS-P-canaliculata_contig10432:2810..2983Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 2811..2983 +
1622815613.8321023-CDS-P-canaliculata_contig10432:3283..34771622815613.8321023-CDS-P-canaliculata_contig10432:3283..3477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 3284..3477 +
1693494166.5823603-CDS-P-canaliculata_contig10432:3283..34771693494166.5823603-CDS-P-canaliculata_contig10432:3283..3477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 3284..3477 +
1622815613.8477325-CDS-P-canaliculata_contig10432:3782..40031622815613.8477325-CDS-P-canaliculata_contig10432:3782..4003Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 3783..4003 +
1693494166.5905375-CDS-P-canaliculata_contig10432:3782..40031693494166.5905375-CDS-P-canaliculata_contig10432:3782..4003Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10432 3783..4003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10432.592.1prot_P-canaliculata_contig10432.592.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10432 1681..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10432.592.1

>prot_P-canaliculata_contig10432.592.1 ID=prot_P-canaliculata_contig10432.592.1|Name=mRNA_P-canaliculata_contig10432.592.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=313bp
MSVALFSLLRKGGALRGLPVLKSFSGWPFRNGLPRTRPCSGMDAAAVAEG
PEGTDLPEVMHRVVEEDELKAEVIIVGDVHGCHGEMVTLLKRCGYRLGNQ
EDRERFSVVLAGDLVNKGPGNAEVVRTARKEGFLAVRGNHDNFILAATTG
VGRFSDALTLEERLKSPPWVQELSSDDVRWLSALPYTLSFPSMGFIVVHA
GLVPGVPLERQDTTAMSCMRNVVESETGIGYEPRVNAKEGIPWAKAWKGP
EHVYFGHDAVRGFQREPFATGLDTGCVYGRSLTAIVLPGGRIVCVPAEAE
WEKPGAPKKALR*
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mRNA from alignment at P-canaliculata_contig10432:1653..4297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10432.592.1 ID=mRNA_P-canaliculata_contig10432.592.1|Name=mRNA_P-canaliculata_contig10432.592.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2645bp|location=Sequence derived from alignment at P-canaliculata_contig10432:1653..4297+ (Pelvetia canaliculata dioecious)
GAGTCGGGCGGTGGCAGCCGCTGTCATAATGTCGGTCGCCCTTTTTTCCT TACTCCGTAAAGGCGGCGCCCTACGAGGCTTGCCGGTATTGAAGTCATTT AGTGGCTGGCCTTTCCGAAATGGCTTGCCCCGTACGCGACCATGTTCAGG TATGGATGCTGCAGCAGTAGCTGAGGGCCCTGAGGGCACCGACTTACCAG AGGTGATGCACCGAGTGGTGGAAGAAGATGAGCTGAAGGTAGGAATCCGA TATGGCTAAGGCGCTAAGAGCCTTTTTGGAAAAGACTGCAAAGCGCGACA GTATACACACCTACTAGTAAAACTCTAGAGCTTAAGGTACTGTAACCCAA CTCTTGACACCCCTATCAAATATTAACACTGGTACGACATGTCAGCAGGG CTCGTGGACGGCCATGACATCTTTCTATGCGCGATATTTGTGATATCGCA CTACGATTAAAGGCGGGCGTTGCCACTATAATACCGTGCATTCGTTTCTT TTCGTCTTCCTGATGTACCGTATAGTACAGTAGTACCTACAGAATACTCG TAAATAGTTCTTCTCGAACCAGGGCGGACCTTGAGATACAGCAGGTACGG TGTTGCATGTACCCAAGCCCAACATGTCTGGAAAATCAGAGGAAGCAGGT GTTTCGAGCAGGAGTTTTGAGCAGAAGTCTCTAGTGAGCCTGGTAAGCTC TTTTCAAACTGAAATGTATGGCCATCCCGCACGCGTTGTAGATTCCGCAG CGCTGCCGAGCTCAGCCTTGACAAGAGACTATGTGCTTATAGAGCTAGTC ATTCGCCCAACAGCGACAACGAGATGGTCGATGGTCCTCCTCCGGACCAC TCTCCGTTGCTTTAAAACCGCAGGCAGAAGTGATCATAGTCGGCGACGTA CACGGTTGTCACGGTGAGATGGTGACGCTGCTGAAGCGCTGCGGTTACAG ACTTGGTAACCAGGAGGATAGAGAGCGCTTCTCCGTCGTGCTGGCGGGCG ACCTCGTCAACAAGGTGCTGTCAACGCCGCGCGTCGTGTGAACGATTTTG TATACACTCATGTACACTCAACGAGTTTGAGACTAAGAATAGGTCTCAGC GAAAGGAAGCAGGAAACCCACTACTGTTCGCTGGTGACCGAAACGTGCTC CGTTCCAGGGTCCGGGAAACGCTGAGGTCGTGCGGACGGCGAGAAAGGAG GGATTTTTGGCCGTGCGCGGAAACCACGACAACTTCATCCTGGCGGCGAC GACCGGGGTGGGCAGGTTCTCGGATGCATTGACGCTCGAAGAGCGACTGA AGAGTCCTCCATGGGTGCAGGAACTGTCGAGGTTTGTCATTTGAGCTTCG AAGCCTCGACATTTTTATTCATCTAGCAGTGTTTTCGCGCTCATAATCCT CTGGGAAACTGGAAATTAGCTTTTCCGTCAAAGCGATACTGTTGTGCCGG CTGGAACCGTTACGAGAATGATGATCGATCAGCCCCTGTCAAGCCTGCCC GTACCCACTCAATCTCCAGTGATGCAAATCCTCGACGCTCCTGAACAACT TCGTTTTAACGCGTCTTCATGTCGGCCTGCCCCCGCGGGGACAAACAAAT GCTCTTTACCTCTGCTGATTGTCCCCGACAGCGACGACGTTCGGTGGTTG AGCGCTCTGCCGTACACGCTGTCTTTCCCGTCAATGGGCTTCATCGTCGT ACACGCGGGACTGGTACCCGGGGTGCCTTTGGAGAGACAGGACACCACTG CCATGTCATGCATGCGGAACGTGGTGGAATCGGAGACGGGCATTGGCTAC GAGCCTCGGGTGAACGCCAAGGAAGGTACGTTGGCCGATACGAACGCTTG CTGGCTTACCGACCTGCGACTCGGTGGTGCATGGATGGAAATTTTGAGGC CATCCTATAGAGGAAGATGCAGGGAAAGGGGGCCGAGAACGATATTTCGA TGTGCGTGTCATGAGCGTCGGAAAATAACTCAATTTCGCCTTGGCCGAAG AAGAACGGCGGTCTGAAGTGAAGGGTCGCTCGAGCTCGTTTCCATCTCCC GAAACGGCCCTGTGCAGCTCGATGACTCTTGTACACCCGTGTGTCCTGTT TTATCGCTTGGCGCATTCCAATCGTTCAAGGCATCCCCTGGGCCAAGGCA TGGAAGGGGCCCGAGCACGTCTATTTCGGGCACGACGCGGTTAGAGGATT CCAAAGGGAACCGTTTGCCACTGGCCTTGACACCGGCTGTGTGTACGGCC GATCTTTGACAGCGATCGTTTTGCCAGGGGGGAGGATCGTCTGCGTTCCC GCCGAAGCCGAGTGGGAAAAACCAGGAGCCCCCAAAAAGGCATTAAGATG ACTGTTATACAGTTTTTGTATACGTTTTACTAAAGTGATGTGTTCTGTTG TCGATCATCAAGTAATCACTTTAAGACAGAAACGGTGCCGATGCAAGCGC GTTTTCCGTGCGGGTCAAGGGGCTCACGCAATGCGTACAATGTATTATCA TCTTCACATCTTGGAAGGTGAGGATTAGCTTCTACGATGCTACAGTTGCG GCGAGCAACTACTCGAAATACGCGGTGTAATTCACGCTTAATAAATGAAC ATATCACCAAGAACGCCGAGGCTGTGTGGGGTGACGAGATTGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10432:1653..4297+

>mRNA_P-canaliculata_contig10432.592.1 ID=mRNA_P-canaliculata_contig10432.592.1|Name=mRNA_P-canaliculata_contig10432.592.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at P-canaliculata_contig10432:1653..4297+ (Pelvetia canaliculata dioecious)
ATGTCGGTCGCCCTTTTTTCCTTACTCCGTAAAGGCGGCGCCCTACGAGG
CTTGCCGGTATTGAAGTCATTTAGTGGCTGGCCTTTCCGAAATGGCTTGC
CCCGTACGCGACCATGTTCAGGTATGGATGCTGCAGCAGTAGCTGAGGGC
CCTGAGGGCACCGACTTACCAGAGGTGATGCACCGAGTGGTGGAAGAAGA
TGAGCTGAAGATGTCGGTCGCCCTTTTTTCCTTACTCCGTAAAGGCGGCG
CCCTACGAGGCTTGCCGGTATTGAAGTCATTTAGTGGCTGGCCTTTCCGA
AATGGCTTGCCCCGTACGCGACCATGTTCAGGTATGGATGCTGCAGCAGT
AGCTGAGGGCCCTGAGGGCACCGACTTACCAGAGGTGATGCACCGAGTGG
TGGAAGAAGATGAGCTGAAGGCAGAAGTGATCATAGTCGGCGACGTACAC
GGTTGTCACGGTGAGATGGTGACGCTGCTGAAGCGCTGCGGTTACAGACT
TGGTAACCAGGAGGATAGAGAGCGCTTCTCCGTCGTGCTGGCGGGCGACC
TCGTCAACAAGGCAGAAGTGATCATAGTCGGCGACGTACACGGTTGTCAC
GGTGAGATGGTGACGCTGCTGAAGCGCTGCGGTTACAGACTTGGTAACCA
GGAGGATAGAGAGCGCTTCTCCGTCGTGCTGGCGGGCGACCTCGTCAACA
AGGGTCCGGGAAACGCTGAGGTCGTGCGGACGGCGAGAAAGGAGGGATTT
TTGGCCGTGCGCGGAAACCACGACAACTTCATCCTGGCGGCGACGACCGG
GGTGGGCAGGTTCTCGGATGCATTGACGCTCGAAGAGCGACTGAAGAGTC
CTCCATGGGTGCAGGAACTGTCGAGGGTCCGGGAAACGCTGAGGTCGTGC
GGACGGCGAGAAAGGAGGGATTTTTGGCCGTGCGCGGAAACCACGACAAC
TTCATCCTGGCGGCGACGACCGGGGTGGGCAGGTTCTCGGATGCATTGAC
GCTCGAAGAGCGACTGAAGAGTCCTCCATGGGTGCAGGAACTGTCGAGCG
ACGACGTTCGGTGGTTGAGCGCTCTGCCGTACACGCTGTCTTTCCCGTCA
ATGGGCTTCATCGTCGTACACGCGGGACTGGTACCCGGGGTGCCTTTGGA
GAGACAGGACACCACTGCCATGTCATGCATGCGGAACGTGGTGGAATCGG
AGACGGGCATTGGCTACGAGCCTCGGGTGAACGCCAAGGAAGCGACGACG
TTCGGTGGTTGAGCGCTCTGCCGTACACGCTGTCTTTCCCGTCAATGGGC
TTCATCGTCGTACACGCGGGACTGGTACCCGGGGTGCCTTTGGAGAGACA
GGACACCACTGCCATGTCATGCATGCGGAACGTGGTGGAATCGGAGACGG
GCATTGGCTACGAGCCTCGGGTGAACGCCAAGGAAGGCATCCCCTGGGCC
AAGGCATGGAAGGGGCCCGAGCACGTCTATTTCGGGCACGACGCGGTTAG
AGGATTCCAAAGGGAACCGTTTGCCACTGGCCTTGACACCGGCTGTGTGT
ACGGCCGATCTTTGACAGCGATCGTTTTGCCAGGGGGGAGGATCGTCTGC
GTTCCCGCCGAAGCCGAGTGGGAAAAACCAGGAGCCCCCAAAAAGGCATT
AAGATGAGCATCCCCTGGGCCAAGGCATGGAAGGGGCCCGAGCACGTCTA
TTTCGGGCACGACGCGGTTAGAGGATTCCAAAGGGAACCGTTTGCCACTG
GCCTTGACACCGGCTGTGTGTACGGCCGATCTTTGACAGCGATCGTTTTG
CCAGGGGGGAGGATCGTCTGCGTTCCCGCCGAAGCCGAGTGGGAAAAACC
AGGAGCCCCCAAAAAGGCATTAAGATGA
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