mRNA_P-canaliculata_contig10428.585.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10428.585.1
Unique NamemRNA_P-canaliculata_contig10428.585.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: D7G916_ECTSI (S1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G916_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.900e-36
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            +VEGVV EGLPSAMFRVEVG TGKVVLCTISG+IRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:   65 KVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 130
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: A0A6H5KG72_9PHAE (S1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG72_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 7.190e-36
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            +VEGVV EGLPSAMFRVEVG TGKVVLCTISG+IRKNFVRILVGDPVRVELSPYDLTRGRITFRYK
Sbjct:  108 EVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 173
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: A0A835YXL6_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.380e-32
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            +VEGVV E LPSAMFRVE+  T +++LCTISGKIRKNFVRILVGDPV+VELSPYDLTRGRITFRYK
Sbjct:   79 EVEGVVKESLPSAMFRVEISPTNQIILCTISGKIRKNFVRILVGDPVKVELSPYDLTRGRITFRYK 144
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: A0A7S4EBF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.660e-29
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFR 192
            +V+GVVTE LPSA FRVE+G T +V+LCTISGKIRKNFV+ILVGD V+VELSPYDLTRGRITFR
Sbjct:   64 EVDGVVTEALPSANFRVEIGATKQVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 127
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: A0A6U1NIU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NIU1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.700e-28
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            +VEGVV E LP+AMFRVE+     V+LCTISGKIRKNFV++LVGD VRVELSPYDLTRGRITFRY+
Sbjct:   95 EVEGVVKESLPNAMFRVELEANQNVILCTISGKIRKNFVKVLVGDSVRVELSPYDLTRGRITFRYR 160
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: F0YCA5_AURAN (S1-like domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA5_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-25
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   10 GVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFR 192
            GVV E LP+AMFRVE+G    V+LCTISGKIRKNFV+ILVGD V+VELSPYDLTRGRITFR
Sbjct:    1 GVVKEALPNAMFRVEIG----VLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 57
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: F2N8M5_CORGP (Translation initiation factor IF-1 n=11 Tax=Coriobacteriaceae TaxID=84107 RepID=F2N8M5_CORGP)

HSP 1 Score: 96.7 bits (239), Expect = 9.770e-25
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            ++EG VTE LP+AMFRVE+ + G  VLC+ISGKIR N++RIL GD V VELSPYDLTRGRIT+RYK
Sbjct:   27 ELEGTVTEPLPNAMFRVEL-ENGHTVLCSISGKIRMNYIRILPGDKVVVELSPYDLTRGRITYRYK 91
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: G1WJC9_9ACTN (Translation initiation factor IF-1 n=80 Tax=Coriobacteriaceae TaxID=84107 RepID=G1WJC9_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 1.170e-24
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            ++EG VTE LP+AMFRVE+ + G  VLC+ISGKIR N++RIL GD V VELSPYDLTRGRIT+RYK
Sbjct:    8 ELEGTVTEPLPNAMFRVEL-ENGHSVLCSISGKIRMNYIRILPGDKVVVELSPYDLTRGRITYRYK 72
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: F1T3N7_9ACTO (Translation initiation factor IF-1 n=3 Tax=Actinobacteria TaxID=201174 RepID=F1T3N7_9ACTO)

HSP 1 Score: 95.9 bits (237), Expect = 1.620e-24
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            ++EG V E LP+AMF VE+ + GK +LCTISGKIR N++RIL GD V VE+SPYDLTRGRIT+RYK
Sbjct:   20 ELEGTVLEPLPNAMFNVEL-ENGKTILCTISGKIRMNYIRILPGDKVTVEISPYDLTRGRITYRYK 84
[Close]
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Match: A0A2W4HXQ2_9BACT (Translation initiation factor IF-1 n=2 Tax=Candidatus Margulisbacteria TaxID=1817808 RepID=A0A2W4HXQ2_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.660e-24
Identity = 43/66 (65.15%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 198
            +VEG + E +P+AMFRVE+ DTG+V+L  +SGKIRKNF+R+L+GD V++ELSPYDLT+GRIT+R K
Sbjct:    8 EVEGKIVETMPNAMFRVEL-DTGQVILAHVSGKIRKNFIRVLLGDRVKIELSPYDLTKGRITYRIK 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10428.585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G916_ECTSI2.900e-3693.94S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KG72_9PHAE7.190e-3693.94S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YXL6_9STRA1.380e-3283.33S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4EBF0_9STRA5.660e-2981.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U1NIU1_9STRA2.700e-2877.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YCA5_AURAN1.030e-2580.33S1-like domain-containing protein (Fragment) n=1 T... [more]
F2N8M5_CORGP9.770e-2571.21Translation initiation factor IF-1 n=11 Tax=Coriob... [more]
G1WJC9_9ACTN1.170e-2471.21Translation initiation factor IF-1 n=80 Tax=Coriob... [more]
F1T3N7_9ACTO1.620e-2468.18Translation initiation factor IF-1 n=3 Tax=Actinob... [more]
A0A2W4HXQ2_9BACT1.660e-2465.15Translation initiation factor IF-1 n=2 Tax=Candida... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10428contigP-canaliculata_contig10428:4498..4698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.1e-27
Seed eggNOG ortholog2880.D7G916
Preferred nameinfA
KEGG koko:K02518
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009536,GO:0043021,GO:0043022,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044877
EggNOG free text desc.translation initiation factor activity
EggNOG OGs2S8M9@2759,COG0361@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-15_002280.1
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.8478675-CDS-P-canaliculata_contig10428:4497..46981622815612.8478675-CDS-P-canaliculata_contig10428:4497..4698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10428 4498..4698 +
1693494165.9838269-CDS-P-canaliculata_contig10428:4497..46981693494165.9838269-CDS-P-canaliculata_contig10428:4497..4698Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10428 4498..4698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10428.585.1prot_P-canaliculata_contig10428.585.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10428 4498..4698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10428.585.1

>prot_P-canaliculata_contig10428.585.1 ID=prot_P-canaliculata_contig10428.585.1|Name=mRNA_P-canaliculata_contig10428.585.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=67bp
QVEGVVTEGLPSAMFRVEVGDTGKVVLCTISGKIRKNFVRILVGDPVRVE
LSPYDLTRGRITFRYK*
back to top

mRNA from alignment at P-canaliculata_contig10428:4498..4698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10428.585.1 ID=mRNA_P-canaliculata_contig10428.585.1|Name=mRNA_P-canaliculata_contig10428.585.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at P-canaliculata_contig10428:4498..4698+ (Pelvetia canaliculata dioecious)
CAGGTGGAAGGTGTCGTTACAGAGGGCCTGCCAAGTGCGATGTTTCGTGT
TGAAGTGGGGGACACAGGGAAAGTGGTCTTGTGTACCATCAGCGGAAAGA
TACGCAAAAATTTCGTTCGGATTTTGGTCGGAGACCCGGTCAGAGTGGAG
CTATCTCCGTATGACCTTACGCGTGGCAGGATAACCTTTCGCTACAAGTG
A
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10428:4498..4698+

>mRNA_P-canaliculata_contig10428.585.1 ID=mRNA_P-canaliculata_contig10428.585.1|Name=mRNA_P-canaliculata_contig10428.585.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at P-canaliculata_contig10428:4498..4698+ (Pelvetia canaliculata dioecious)
CAGGTGGAAGGTGTCGTTACAGAGGGCCTGCCAAGTGCGATGTTTCGTGT
TGAAGTGGGGGACACAGGGAAAGTGGTCTTGTGTACCATCAGCGGAAAGA
TACGCAAAAATTTCGTTCGGATTTTGGTCGGAGACCCGGTCAGAGTGGAG
CTATCTCCGTATGACCTTACGCGTGGCAGGATAACCTTTCGCTACAAGTG
ACAGGTGGAAGGTGTCGTTACAGAGGGCCTGCCAAGTGCGATGTTTCGTG
TTGAAGTGGGGGACACAGGGAAAGTGGTCTTGTGTACCATCAGCGGAAAG
ATACGCAAAAATTTCGTTCGGATTTTGGTCGGAGACCCGGTCAGAGTGGA
GCTATCTCCGTATGACCTTACGCGTGGCAGGATAACCTTTCGCTACAAGT
GA
back to top