mRNA_P-canaliculata_contig104259.582.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104259.582.1
Unique NamemRNA_P-canaliculata_contig104259.582.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4GFY2_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GFY2_VITBC)

HSP 1 Score: 77.8 bits (190), Expect = 1.680e-13
Identity = 60/142 (42.25%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEP--PAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTG---NAEAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLR 432
            G ++RAA+ L   P+   T +   +L+ALHP       PAAP   A      R+ L A L    RG AAGP+G  YEH+   V     NA+A  VL + V  ML G LP      L   RL ++ KPGGGVRPIAIG+ L R
Sbjct: 1313 GELSRAASRLTSPPVAAATQQSLDQLRALHPDAAPVVRPAAPAGDAPRLEASRDFLLAALKTAPRGSAAGPTGWRYEHLQVLVGEAHTNADAVPVL-KFVQRMLDGDLPPVVTKLLAAARLFALEKPGGGVRPIAIGDALRR 1453          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4G3F0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G3F0_VITBC)

HSP 1 Score: 75.9 bits (185), Expect = 4.510e-13
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEP--EPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTG---NAEAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLR 432
            G ++RAA+ L   P+     +   +L+ALHP     + PAAP + A      R+ L A L    RG AAGP+   YEH+   +     NAEA  VL + V  ML G LP      L   RL ++ KPGGGVRPIAIG+VL R
Sbjct:  171 GELSRAASRLTSAPVAAANQQTLDQLRALHPDAAPIDRPAAPAEDAPRLETKRDFLLAALKTAPRGAAAGPTCWRYEHLQVLLGEAHTNAEAVPVL-KFVQRMLDGDLPPLVTRLLAAARLFALEKPGGGVRPIAIGDVLRR 311          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A813HDR1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HDR1_POLGL)

HSP 1 Score: 73.2 bits (178), Expect = 6.570e-12
Identity = 59/159 (37.11%), Postives = 81/159 (50.94%), Query Frame = 1
Query:    1 RRIHAALAAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPP-AAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVT-GNAEAF-DVLLELVNLMLSGS--LPHCPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAAC 462
            RR  A    G   +A A L  + L+  TP     ++ LHP+   P  AAP    +A  +  + +  +L    R  AAGPSG+  +H+  A+T  N EA  + L  LVNL+  G   +     L   RL++V KP GG+RPIAIGEVL R+   C  A C
Sbjct:  512 RRAEALSREGFDRKACAALLADGLIEATPANVGIMRGLHPTALLPTTAAPHSLPLAYEIPADLVERMLRSFPRDSAAGPSGLRVQHLLEALTPANREAMLEQLTSLVNLLARGEAQILVAEHLAGARLLAVGKPKGGLRPIAIGEVLRRLTGKCLCALC 670          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO)

HSP 1 Score: 69.7 bits (169), Expect = 8.820e-11
Identity = 65/172 (37.79%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   22 AAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPEDAAVAAAVDR---EQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV-LLELVNLMLSGSLPH--CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIAS--LCALAACPGTGGKLAPLQLGVGV 510
            A G + RA   L QEP L         LQA HP  P P  A   A    AV     E +   +   KR  A GPSG+  +H+  ++ T +A+   V L  L +L+  G  P    P L    L ++ KP GGVRPIAIGEVL R+    LC  +       +L PLQ+GVGV
Sbjct:  125 AEGDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEAPATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCG-SVREAARDQLWPLQVGVGV 295          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812N7J5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N7J5_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 1.360e-10
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
            E    L+ALHP++P P    +   +AA V  + +   L +L    A GP G+  +H+  A    A     + L   V L+  G + P   P L    LV++ KPGGGVRPIA+GE+L R+ S C +        +  AP+QLGVGV
Sbjct:  190 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 335          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812SIY8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SIY8_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
            E    L+ALHP++P P    +   +AA V  + +   L +L    A GP G+  +H+  A    A     + L   V L+  G + P   P L    LV++ KPGGGVRPIA+GE+L R+ S C +        +  AP+QLGVGV
Sbjct:  409 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 554          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812S2M8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S2M8_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-10
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
            E    L+ALHP++P P    +   +AA V  + +   L +L    A GP G+  +H+  A    A     + L   V L+  G + P   P L    LV++ KPGGGVRPIA+GE+L R+ S C +        +  AP+QLGVGV
Sbjct: 1137 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 1282          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A6A4VI24_AMPAM (Retrotransposable element SLACS protein n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VI24_AMPAM)

HSP 1 Score: 68.9 bits (167), Expect = 1.840e-10
Identity = 62/184 (33.70%), Postives = 89/184 (48.37%), Query Frame = 1
Query:    1 RRIHAALAAGSVTRAAAVL-EQEPLLTWTPELQTKLQALHPSEPEP---PAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHV---TAAVTGNA--EAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGT-GGKLAPLQLGVGVSG 516
            R + A +  G V  A  +L  ++ L   + E+   LQ  HP  P+    PAAP+++     V   ++ A ++    G +AG  G+   H+   T   TG A       L  LVNL+LSG +P   R       L ++ KPGGGVRPIA+G    R+A+  AL       G  L P+QLG G +G
Sbjct:   39 RSVAAKIEDGDVRGAIRLLASKDQLAQSSQEIIDSLQLKHPPSPDDLALPAAPDESIQPCQVTEPEVAASIASFDTGSSAGLDGLRPAHLKDLTTRSTGEAGVRLISALTALVNLVLSGDVPASARDAFFGGALTALRKPGGGVRPIAVGNTYRRLATKVALKPISAELGDLLRPVQLGYGTTG 222          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812KQM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KQM1_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 2.390e-10
Identity = 65/172 (37.79%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   22 AAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPEDAAVAAAVDR---EQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV-LLELVNLMLSGSLPH--CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIAS--LCALAACPGTGGKLAPLQLGVGV 510
            A G + RA   L QEP L         LQA HP  P P  A   A    AV     E +   +   KR  A GPSG+  +H+  ++ T +A+   V L  L +L+  G  P    P L    L ++ KP GGVRPIAIGEVL R+    LC  +       +L PLQ+GVGV
Sbjct:  192 AEGDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLGRGEAPATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCG-SVREAARDQLWPLQVGVGV 362          
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4F6C9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6C9_VITBC)

HSP 1 Score: 67.4 bits (163), Expect = 2.700e-10
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPS-----EPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV---LLELVNLMLSGSLPHC--PRLTDCRLVSVAKPGGGVRPIAIGEVLLR 432
            G ++RAA  L    +   T     +L+ LHP+     +P+P   P+   +   V    L A L    RG AAGP+G  YEH+ A +  G+A A D    L  LV+ ML+G++P      L+  RL ++ K  GGVRPIA+G+VL R
Sbjct:  113 GELSRAARRLTAAKVAPATAATLQQLKDLHPAAPLPTKPQPQNGPDGPPLPLTVPPRVLLAALKTAPRGFAAGPTGWRYEHLRACMGEGDASAEDETVPLPSLVSRMLAGNMPDSCTTTLSAARLFALMKDNGGVRPIAVGDVLQR 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4GFY2_VITBC1.680e-1342.25Reverse transcriptase domain-containing protein n=... [more]
A0A0G4G3F0_VITBC4.510e-1341.55Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A813HDR1_POLGL6.570e-1237.11Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812N9S6_9DINO8.820e-1137.79Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812N7J5_9DINO1.360e-1036.30Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812SIY8_9DINO1.380e-1036.30Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812S2M8_9DINO1.440e-1036.30Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A6A4VI24_AMPAM1.840e-1033.70Retrotransposable element SLACS protein n=3 Tax=Am... [more]
A0A812KQM1_9DINO2.390e-1037.79Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A0G4F6C9_VITBC2.700e-1036.99Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104259contigP-canaliculata_contig104259:451..966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.70644-CDS-P-canaliculata_contig104259:450..9661622815612.70644-CDS-P-canaliculata_contig104259:450..966Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104259 451..966 +
1693494165.947541-CDS-P-canaliculata_contig104259:450..9661693494165.947541-CDS-P-canaliculata_contig104259:450..966Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104259 451..966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104259.582.1prot_P-canaliculata_contig104259.582.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104259 451..966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104259.582.1

>prot_P-canaliculata_contig104259.582.1 ID=prot_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=172bp
RRIHAALAAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPE
DAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEAFDVL
LELVNLMLSGSLPHCPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCA
LAACPGTGGKLAPLQLGVGVSG
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mRNA from alignment at P-canaliculata_contig104259:451..966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104259.582.1 ID=mRNA_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at P-canaliculata_contig104259:451..966+ (Pelvetia canaliculata dioecious)
CGCCGTATTCACGCGGCGCTCGCTGCAGGCAGCGTCACACGCGCGGCGGC AGTCCTCGAGCAGGAGCCTCTGCTGACGTGGACCCCTGAGCTGCAGACGA AGCTGCAGGCGCTGCACCCCTCCGAGCCAGAGCCGCCGGCGGCTCCCGAG GACGCCGCTGTCGCAGCGGCAGTCGACCGCGAGCAGCTGACCGCCGTGCT CAGCAAGCTGAAGCGCGGCAAGGCGGCGGGCCCCAGCGGCATGACGTACG AGCACGTCACCGCGGCCGTGACAGGCAACGCAGAAGCCTTCGACGTGCTG CTCGAGCTCGTCAACCTCATGCTGTCAGGATCGCTGCCTCACTGCCCGCG GCTCACGGACTGCCGCCTTGTCTCCGTCGCCAAGCCCGGCGGCGGCGTGC GCCCCATCGCCATCGGCGAGGTGCTGCTGCGCATCGCCAGCCTCTGCGCA CTCGCCGCATGCCCGGGCACCGGCGGCAAGCTGGCGCCGCTGCAGCTCGG CGTGGGCGTCTCTGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig104259:451..966+

>mRNA_P-canaliculata_contig104259.582.1 ID=mRNA_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at P-canaliculata_contig104259:451..966+ (Pelvetia canaliculata dioecious)
CGCCGTATTCACGCGGCGCTCGCTGCAGGCAGCGTCACACGCGCGGCGGC
AGTCCTCGAGCAGGAGCCTCTGCTGACGTGGACCCCTGAGCTGCAGACGA
AGCTGCAGGCGCTGCACCCCTCCGAGCCAGAGCCGCCGGCGGCTCCCGAG
GACGCCGCTGTCGCAGCGGCAGTCGACCGCGAGCAGCTGACCGCCGTGCT
CAGCAAGCTGAAGCGCGGCAAGGCGGCGGGCCCCAGCGGCATGACGTACG
AGCACGTCACCGCGGCCGTGACAGGCAACGCAGAAGCCTTCGACGTGCTG
CTCGAGCTCGTCAACCTCATGCTGTCAGGATCGCTGCCTCACTGCCCGCG
GCTCACGGACTGCCGCCTTGTCTCCGTCGCCAAGCCCGGCGGCGGCGTGC
GCCCCATCGCCATCGGCGAGGTGCTGCTGCGCATCGCCAGCCTCTGCGCA
CTCGCCGCATGCCCGGGCACCGGCGGCAAGCTGGCGCCGCTGCAGCTCGG
CGTGGGCGTCTCTGGCCGCCGTATTCACGCGGCGCTCGCTGCAGGCAGCG
TCACACGCGCGGCGGCAGTCCTCGAGCAGGAGCCTCTGCTGACGTGGACC
CCTGAGCTGCAGACGAAGCTGCAGGCGCTGCACCCCTCCGAGCCAGAGCC
GCCGGCGGCTCCCGAGGACGCCGCTGTCGCAGCGGCAGTCGACCGCGAGC
AGCTGACCGCCGTGCTCAGCAAGCTGAAGCGCGGCAAGGCGGCGGGCCCC
AGCGGCATGACGTACGAGCACGTCACCGCGGCCGTGACAGGCAACGCAGA
AGCCTTCGACGTGCTGCTCGAGCTCGTCAACCTCATGCTGTCAGGATCGC
TGCCTCACTGCCCGCGGCTCACGGACTGCCGCCTTGTCTCCGTCGCCAAG
CCCGGCGGCGGCGTGCGCCCCATCGCCATCGGCGAGGTGCTGCTGCGCAT
CGCCAGCCTCTGCGCACTCGCCGCATGCCCGGGCACCGGCGGCAAGCTGG
CGCCGCTGCAGCTCGGCGTGGGCGTCTCTGGC
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