mRNA_P-canaliculata_contig104259.582.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4GFY2_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GFY2_VITBC) HSP 1 Score: 77.8 bits (190), Expect = 1.680e-13 Identity = 60/142 (42.25%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEP--PAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTG---NAEAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLR 432
G ++RAA+ L P+ T + +L+ALHP PAAP A R+ L A L RG AAGP+G YEH+ V NA+A VL + V ML G LP L RL ++ KPGGGVRPIAIG+ L R
Sbjct: 1313 GELSRAASRLTSPPVAAATQQSLDQLRALHPDAAPVVRPAAPAGDAPRLEASRDFLLAALKTAPRGSAAGPTGWRYEHLQVLVGEAHTNADAVPVL-KFVQRMLDGDLPPVVTKLLAAARLFALEKPGGGVRPIAIGDALRR 1453
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4G3F0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G3F0_VITBC) HSP 1 Score: 75.9 bits (185), Expect = 4.510e-13 Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1
Query: 28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEP--EPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTG---NAEAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLR 432
G ++RAA+ L P+ + +L+ALHP + PAAP + A R+ L A L RG AAGP+ YEH+ + NAEA VL + V ML G LP L RL ++ KPGGGVRPIAIG+VL R
Sbjct: 171 GELSRAASRLTSAPVAAANQQTLDQLRALHPDAAPIDRPAAPAEDAPRLETKRDFLLAALKTAPRGAAAGPTCWRYEHLQVLLGEAHTNAEAVPVL-KFVQRMLDGDLPPLVTRLLAAARLFALEKPGGGVRPIAIGDVLRR 311
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A813HDR1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HDR1_POLGL) HSP 1 Score: 73.2 bits (178), Expect = 6.570e-12 Identity = 59/159 (37.11%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 1 RRIHAALAAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPP-AAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVT-GNAEAF-DVLLELVNLMLSGS--LPHCPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAAC 462
RR A G +A A L + L+ TP ++ LHP+ P AAP +A + + + +L R AAGPSG+ +H+ A+T N EA + L LVNL+ G + L RL++V KP GG+RPIAIGEVL R+ C A C
Sbjct: 512 RRAEALSREGFDRKACAALLADGLIEATPANVGIMRGLHPTALLPTTAAPHSLPLAYEIPADLVERMLRSFPRDSAAGPSGLRVQHLLEALTPANREAMLEQLTSLVNLLARGEAQILVAEHLAGARLLAVGKPKGGLRPIAIGEVLRRLTGKCLCALC 670
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO) HSP 1 Score: 69.7 bits (169), Expect = 8.820e-11 Identity = 65/172 (37.79%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 22 AAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPEDAAVAAAVDR---EQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV-LLELVNLMLSGSLPH--CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIAS--LCALAACPGTGGKLAPLQLGVGV 510
A G + RA L QEP L LQA HP P P A A AV E + + KR A GPSG+ +H+ ++ T +A+ V L L +L+ G P P L L ++ KP GGVRPIAIGEVL R+ LC + +L PLQ+GVGV
Sbjct: 125 AEGDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEAPATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCG-SVREAARDQLWPLQVGVGV 295
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812N7J5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N7J5_9DINO) HSP 1 Score: 69.3 bits (168), Expect = 1.360e-10 Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
E L+ALHP++P P + +AA V + + L +L A GP G+ +H+ A A + L V L+ G + P P L LV++ KPGGGVRPIA+GE+L R+ S C + + AP+QLGVGV
Sbjct: 190 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 335
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812SIY8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SIY8_9DINO) HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10 Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
E L+ALHP++P P + +AA V + + L +L A GP G+ +H+ A A + L V L+ G + P P L LV++ KPGGGVRPIA+GE+L R+ S C + + AP+QLGVGV
Sbjct: 409 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 554
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812S2M8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S2M8_9DINO) HSP 1 Score: 69.3 bits (168), Expect = 1.440e-10 Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 88 ELQTKLQALHPSEPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAVTGNAEA--FDVLLELVNLMLSG-SLPH-CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGTGGK-LAPLQLGVGV 510
E L+ALHP++P P + +AA V + + L +L A GP G+ +H+ A A + L V L+ G + P P L LV++ KPGGGVRPIA+GE+L R+ S C + + AP+QLGVGV
Sbjct: 1137 ETANALRALHPAQPAPEVNFDGLPLAAEVVPDVVAKALRQLPADTAPGPCGLRVQHIREAGPPGASLGMLEHLAATVGLLSQGRACPQVAPVLAGASLVALPKPGGGVRPIAVGEILRRLTSKCLMMMVRDDARQYFAPVQLGVGV 1282
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A6A4VI24_AMPAM (Retrotransposable element SLACS protein n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VI24_AMPAM) HSP 1 Score: 68.9 bits (167), Expect = 1.840e-10 Identity = 62/184 (33.70%), Postives = 89/184 (48.37%), Query Frame = 1
Query: 1 RRIHAALAAGSVTRAAAVL-EQEPLLTWTPELQTKLQALHPSEPEP---PAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHV---TAAVTGNA--EAFDVLLELVNLMLSGSLPHCPR--LTDCRLVSVAKPGGGVRPIAIGEVLLRIASLCALAACPGT-GGKLAPLQLGVGVSG 516
R + A + G V A +L ++ L + E+ LQ HP P+ PAAP+++ V ++ A ++ G +AG G+ H+ T TG A L LVNL+LSG +P R L ++ KPGGGVRPIA+G R+A+ AL G L P+QLG G +G
Sbjct: 39 RSVAAKIEDGDVRGAIRLLASKDQLAQSSQEIIDSLQLKHPPSPDDLALPAAPDESIQPCQVTEPEVAASIASFDTGSSAGLDGLRPAHLKDLTTRSTGEAGVRLISALTALVNLVLSGDVPASARDAFFGGALTALRKPGGGVRPIAVGNTYRRLATKVALKPISAELGDLLRPVQLGYGTTG 222
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A812KQM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KQM1_9DINO) HSP 1 Score: 68.6 bits (166), Expect = 2.390e-10 Identity = 65/172 (37.79%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 22 AAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPEDAAVAAAVDR---EQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV-LLELVNLMLSGSLPH--CPRLTDCRLVSVAKPGGGVRPIAIGEVLLRIAS--LCALAACPGTGGKLAPLQLGVGV 510
A G + RA L QEP L LQA HP P P A A AV E + + KR A GPSG+ +H+ ++ T +A+ V L L +L+ G P P L L ++ KP GGVRPIAIGEVL R+ LC + +L PLQ+GVGV
Sbjct: 192 AEGDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLGRGEAPATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCG-SVREAARDQLWPLQVGVGV 362
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Match: A0A0G4F6C9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6C9_VITBC) HSP 1 Score: 67.4 bits (163), Expect = 2.700e-10 Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 1
Query: 28 GSVTRAAAVLEQEPLLTWTPELQTKLQALHPS-----EPEPPAAPEDAAVAAAVDREQLTAVLSKLKRGKAAGPSGMTYEHVTAAV-TGNAEAFDV---LLELVNLMLSGSLPHC--PRLTDCRLVSVAKPGGGVRPIAIGEVLLR 432
G ++RAA L + T +L+ LHP+ +P+P P+ + V L A L RG AAGP+G YEH+ A + G+A A D L LV+ ML+G++P L+ RL ++ K GGVRPIA+G+VL R
Sbjct: 113 GELSRAARRLTAAKVAPATAATLQQLKDLHPAAPLPTKPQPQNGPDGPPLPLTVPPRVLLAALKTAPRGFAAGPTGWRYEHLRACMGEGDASAEDETVPLPSLVSRMLAGNMPDSCTTTLSAARLFALMKDNGGVRPIAVGDVLQR 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104259.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104259.582.1 >prot_P-canaliculata_contig104259.582.1 ID=prot_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=172bp RRIHAALAAGSVTRAAAVLEQEPLLTWTPELQTKLQALHPSEPEPPAAPEback to top mRNA from alignment at P-canaliculata_contig104259:451..966+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104259.582.1 ID=mRNA_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at P-canaliculata_contig104259:451..966+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104259:451..966+ >mRNA_P-canaliculata_contig104259.582.1 ID=mRNA_P-canaliculata_contig104259.582.1|Name=mRNA_P-canaliculata_contig104259.582.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at P-canaliculata_contig104259:451..966+ (Pelvetia canaliculata dioecious)back to top |