mRNA_P-canaliculata_contig104067.558.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7C4YJC5_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4YJC5_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 6.850e-16 Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 1
Query: 40 VAILSFVGCG-DSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTL--ETRYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQ----TFDVPSGGTTEANFDL 489
+A+L GC D VAPVSG+VT+ GKP+ + F+P +G+ PGP S G T++ G +TL ++ + GAVVG H V + D A ++ + A+ K R + E+Y Q TFDVP GGTT ANFDL
Sbjct: 10 LALLPIFGCNRDYKVAPVSGRVTLDGKPLAKAHVHFAPIASDGKIAPGPTSQGETDADGRFTLTLDSEGRKSGAVVGSHKVYIITVDTQ----------------------AGPSEMPDAGAKPKRR-EILPERYNQDTKLTFDVPPGGTTAANFDL 143
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A8J7TWK2_9BACT (Uncharacterized protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TWK2_9BACT) HSP 1 Score: 72.8 bits (177), Expect = 2.470e-13 Identity = 50/157 (31.85%), Postives = 72/157 (45.86%), Query Frame = 1
Query: 22 TIALFGVAILSFVGCGDSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI-GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
+++ VA+L GCG + V PVSG+VT+ G+P+ + + F P E +PG S +T++ G + L D GAVVG H V ++D + D+ A A+Y K TFDVP GGT +ANF L
Sbjct: 4 SLSFLAVALLPAAGCGPAGVVPVSGRVTLNGQPLANVHVSFQPIAAGTEINPGGGSYALTDADGRFALRLVEGDAPGAVVGRHRVEITPRNVDD-------------DRDRRGKGAVTGVPAKY-----------NRKSDLTFDVPRGGTDQANFVL 136
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7V8VH60_9BACT (Uncharacterized protein n=2 Tax=Gemmataceae TaxID=1914233 RepID=A0A7V8VH60_9BACT) HSP 1 Score: 73.2 bits (178), Expect = 2.700e-13 Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query: 25 IALFGVAILSFVGCGDS--SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLET---RYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
+A G+ GC D PVSG+V V GKPV + + F P E DPGP S+G+T++ G +TL+ +Y GAVVG H V I ++ EG + D A ++ P+ + TF+VP GGT +ANF++
Sbjct: 7 LAGMGLLAACAFGCSDGRPKFVPVSGRVLVDGKPVANLMVTFQPMQTEKNKDPGPGSAGVTDAEGRFTLKVSSQQYSGTGAVVGKHKVR-----IGTVL---------PGEGQATDPSIGSPDDAPLAGKELIPPQYNQDTIL-TFEVPPGGTDQANFEI 151
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A5C5V1R0_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5V1R0_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 2.350e-11 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 1 MSNFTNLTIALFGVAILSFVGCGDSS--VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTV 273
M L++ L + I GCG +APVSG VT+ GKPV G + + P EG PGP S+G + G YTL T + GAVVG+H V
Sbjct: 1 MPRHHRLSVCLVALMIAPLAGCGSKGYQLAPVSGVVTLDGKPVPGTLVNYQPVGSEGVT-PGPGSTGRCDENGRYTLSTIRDETGAVVGLHRV 92
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A517T4Q8_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T4Q8_9PLAN) HSP 1 Score: 65.9 bits (159), Expect = 1.670e-10 Identity = 48/157 (30.57%), Postives = 70/157 (44.59%), Query Frame = 1
Query: 37 GVAILSFVGCGDSS----VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKD--IGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
G+ + GCG+S + PVSG+VT+ GKP + + F P L D GP S+ + G Y L+ + +GAVVG H VS + + V RE E + + + + R + + K TF VP GT A+FDL
Sbjct: 12 GLCFMLMSGCGNSGDGPQIVPVSGQVTINGKPAAHVLVRFKPELTSDSIDSGPASAAFADEEGRYKLQVTVGERAMGAVVGQHRVSILGRESKDAV------REWTPENPEDVIGEPRPPLTLPEVRLTKQQR----KQQLTFTVPEDGTNSADFDL 158
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A354GLI9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GLI9_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10 Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 4 SNFTNLTIALFGVAILSFVGCGDS-SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTV 273
+N T L A+L+ +GCG APV G VT+AG+P+ G+R+ F P EG P P+++G T++AG YTL GA+VG + V
Sbjct: 5 TNSAGATTGLLAAALLTAIGCGQPRDYAPVEGTVTLAGRPLSGVRVWFYPEA-EGREQP-PYATGTTDAAGLYTLTAETGKPGALVGKNRV 93
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7V3JID6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JID6_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 2.680e-10 Identity = 57/168 (33.93%), Postives = 76/168 (45.24%), Query Frame = 1
Query: 1 MSNFTNLTIALFGVAILSFVGCGDSS---VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI--GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
M +T L L+ GCG S V PVSG VT+ GKP I +VF P + G+ + G S+G+T++ G +TL D GAVVG H V+F QAA A D + PK EK + F+VP+GGT +A+F L
Sbjct: 1 MRRWTVAGSVLLAALGLAASGCGRGSGPKVVPVSGTVTIDGKPAANIAVVFQP-IATGKGEAGMGSTGVTDAQGRFTLTLTGSDKRPGAVVGKHRVTF---------------------SGQAAQRAETDDTVKLGPPDPVPPKYR-EKPLE-FEVPAGGTDKADFKL 144
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A517TLL7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TLL7_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 4.750e-10 Identity = 52/158 (32.91%), Postives = 74/158 (46.84%), Query Frame = 1
Query: 28 ALFGVAILSFVGCGDSSV--APVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI--GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
A+ +L+ +GC +S A V G VT+ G+PV ++V+ P + + GP+S G+T++ G YTL++ GAVVG H + +V K D L D E RQ T K T TF+VPSGGT A+F L
Sbjct: 17 AVMAALLLAAIGCNNSKFEFAEVQGSVTLDGQPVPEAKVVYMPVASNDDGEAGPYSQGVTDAEGRYTLKSVEPSPHKGAVVGQHKI---------VVSTKRAHL------DPDKLDVEIIDSPETIPRQYTYYKRT----PLTFEVPSGGTEIADFQL 155
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A5C5ZRB2_9BACT (Uncharacterized protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZRB2_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 2.240e-9 Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 34 FGVAI-LSFVGCGDS--SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTVSFVYD 288
FGV + L+ GC S+APVSG VT+ GKPV + F P ++G+ PGP S+G + G Y+L T GAVVG H VS D
Sbjct: 5 FGVVLCLAVAGCDSRPYSLAPVSGTVTLNGKPVPRTLVKFVPMTVDGKT-PGPVSTGRCDGDGHYSLTTLDGGRGAVVGKHRVSIFSD 91
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A8J7TW58_9BACT (Uncharacterized protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TW58_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 4.340e-9 Identity = 52/161 (32.30%), Postives = 69/161 (42.86%), Query Frame = 1
Query: 13 TNLTIALFGVAILSFVGC-GDSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIA-EYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
T L I G + + VGC G + PVSG V + G+P + F P E +PG SS T+ G + L+T GAVVG H V + D + E D++ L I E+ AR FDVP GGT +ANFD+
Sbjct: 2 TRLRIIAVGGLLAAAVGCSGGPRIVPVSGVVKLDGQPYGNAVVSFQPIGGESNPEPGRGSSAYTDENGRFELQTDNARKGAVVGKHRVRIMTRGNDVVGQSPE------GSPDESPLNRPVDPIPPEWNARSNV-----------DFDVPPGGTDQANFDI 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104067.558.1 >prot_P-canaliculata_contig104067.558.1 ID=prot_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=166bp MSNFTNLTIALFGVAILSFVGCGDSSVAPVSGKVTVAGKPVEGIRLVFSPback to top mRNA from alignment at P-canaliculata_contig104067:84..581+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104067.558.1 ID=mRNA_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at P-canaliculata_contig104067:84..581+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104067:84..581+ >mRNA_P-canaliculata_contig104067.558.1 ID=mRNA_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig104067:84..581+ (Pelvetia canaliculata dioecious)back to top |