mRNA_P-canaliculata_contig104067.558.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104067.558.1
Unique NamemRNA_P-canaliculata_contig104067.558.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7C4YJC5_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4YJC5_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 6.850e-16
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   40 VAILSFVGCG-DSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTL--ETRYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQ----TFDVPSGGTTEANFDL 489
            +A+L   GC  D  VAPVSG+VT+ GKP+    + F+P   +G+  PGP S G T++ G +TL  ++  +  GAVVG H V  +  D                        A   ++ +  A+ K R +   E+Y Q    TFDVP GGTT ANFDL
Sbjct:   10 LALLPIFGCNRDYKVAPVSGRVTLDGKPLAKAHVHFAPIASDGKIAPGPTSQGETDADGRFTLTLDSEGRKSGAVVGSHKVYIITVDTQ----------------------AGPSEMPDAGAKPKRR-EILPERYNQDTKLTFDVPPGGTTAANFDL 143          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A8J7TWK2_9BACT (Uncharacterized protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TWK2_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 2.470e-13
Identity = 50/157 (31.85%), Postives = 72/157 (45.86%), Query Frame = 1
Query:   22 TIALFGVAILSFVGCGDSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI-GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            +++   VA+L   GCG + V PVSG+VT+ G+P+  + + F P     E +PG  S  +T++ G + L     D  GAVVG H V     ++D              + D+    A     A+Y             K   TFDVP GGT +ANF L
Sbjct:    4 SLSFLAVALLPAAGCGPAGVVPVSGRVTLNGQPLANVHVSFQPIAAGTEINPGGGSYALTDADGRFALRLVEGDAPGAVVGRHRVEITPRNVDD-------------DRDRRGKGAVTGVPAKY-----------NRKSDLTFDVPRGGTDQANFVL 136          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7V8VH60_9BACT (Uncharacterized protein n=2 Tax=Gemmataceae TaxID=1914233 RepID=A0A7V8VH60_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-13
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   25 IALFGVAILSFVGCGDS--SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLET---RYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            +A  G+      GC D      PVSG+V V GKPV  + + F P   E   DPGP S+G+T++ G +TL+    +Y   GAVVG H V      I  ++           EG     +    D A    ++   P+   +    TF+VP GGT +ANF++
Sbjct:    7 LAGMGLLAACAFGCSDGRPKFVPVSGRVLVDGKPVANLMVTFQPMQTEKNKDPGPGSAGVTDAEGRFTLKVSSQQYSGTGAVVGKHKVR-----IGTVL---------PGEGQATDPSIGSPDDAPLAGKELIPPQYNQDTIL-TFEVPPGGTDQANFEI 151          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A5C5V1R0_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5V1R0_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.350e-11
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    1 MSNFTNLTIALFGVAILSFVGCGDSS--VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTV 273
            M     L++ L  + I    GCG     +APVSG VT+ GKPV G  + + P   EG   PGP S+G  +  G YTL T   + GAVVG+H V
Sbjct:    1 MPRHHRLSVCLVALMIAPLAGCGSKGYQLAPVSGVVTLDGKPVPGTLVNYQPVGSEGVT-PGPGSTGRCDENGRYTLSTIRDETGAVVGLHRV 92          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A517T4Q8_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T4Q8_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.670e-10
Identity = 48/157 (30.57%), Postives = 70/157 (44.59%), Query Frame = 1
Query:   37 GVAILSFVGCGDSS----VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKD--IGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            G+  +   GCG+S     + PVSG+VT+ GKP   + + F P L     D GP S+   +  G Y L+    +  +GAVVG H VS +  +    V      RE   E  +  +      +   + R   + +    K   TF VP  GT  A+FDL
Sbjct:   12 GLCFMLMSGCGNSGDGPQIVPVSGQVTINGKPAAHVLVRFKPELTSDSIDSGPASAAFADEEGRYKLQVTVGERAMGAVVGQHRVSILGRESKDAV------REWTPENPEDVIGEPRPPLTLPEVRLTKQQR----KQQLTFTVPEDGTNSADFDL 158          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A354GLI9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GLI9_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    4 SNFTNLTIALFGVAILSFVGCGDS-SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTV 273
            +N    T  L   A+L+ +GCG     APV G VT+AG+P+ G+R+ F P   EG   P P+++G T++AG YTL       GA+VG + V
Sbjct:    5 TNSAGATTGLLAAALLTAIGCGQPRDYAPVEGTVTLAGRPLSGVRVWFYPEA-EGREQP-PYATGTTDAAGLYTLTAETGKPGALVGKNRV 93          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A7V3JID6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JID6_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.680e-10
Identity = 57/168 (33.93%), Postives = 76/168 (45.24%), Query Frame = 1
Query:    1 MSNFTNLTIALFGVAILSFVGCGDSS---VAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI--GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            M  +T     L     L+  GCG  S   V PVSG VT+ GKP   I +VF P +  G+ + G  S+G+T++ G +TL     D   GAVVG H V+F                       QAA  A   D  +        PK   EK  + F+VP+GGT +A+F L
Sbjct:    1 MRRWTVAGSVLLAALGLAASGCGRGSGPKVVPVSGTVTIDGKPAANIAVVFQP-IATGKGEAGMGSTGVTDAQGRFTLTLTGSDKRPGAVVGKHRVTF---------------------SGQAAQRAETDDTVKLGPPDPVPPKYR-EKPLE-FEVPAGGTDKADFKL 144          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A517TLL7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TLL7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 4.750e-10
Identity = 52/158 (32.91%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   28 ALFGVAILSFVGCGDSSV--APVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDI--GAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            A+    +L+ +GC +S    A V G VT+ G+PV   ++V+ P     + + GP+S G+T++ G YTL++       GAVVG H +         +V  K          D   L     D  E   RQ T  K T      TF+VPSGGT  A+F L
Sbjct:   17 AVMAALLLAAIGCNNSKFEFAEVQGSVTLDGQPVPEAKVVYMPVASNDDGEAGPYSQGVTDAEGRYTLKSVEPSPHKGAVVGQHKI---------VVSTKRAHL------DPDKLDVEIIDSPETIPRQYTYYKRT----PLTFEVPSGGTEIADFQL 155          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A5C5ZRB2_9BACT (Uncharacterized protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZRB2_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.240e-9
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   34 FGVAI-LSFVGCGDS--SVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTVSFVYD 288
            FGV + L+  GC     S+APVSG VT+ GKPV    + F P  ++G+  PGP S+G  +  G Y+L T     GAVVG H VS   D
Sbjct:    5 FGVVLCLAVAGCDSRPYSLAPVSGTVTLNGKPVPRTLVKFVPMTVDGKT-PGPVSTGRCDGDGHYSLTTLDGGRGAVVGKHRVSIFSD 91          
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Match: A0A8J7TW58_9BACT (Uncharacterized protein n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TW58_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.340e-9
Identity = 52/161 (32.30%), Postives = 69/161 (42.86%), Query Frame = 1
Query:   13 TNLTIALFGVAILSFVGC-GDSSVAPVSGKVTVAGKPVEGIRLVFSPTLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTVSFVYDDIDQIVMFKELRREAKQEGDQAALAAAEQDIA-EYKARQKTRPKSTGEKYTQTFDVPSGGTTEANFDL 489
            T L I   G  + + VGC G   + PVSG V + G+P     + F P   E   +PG  SS  T+  G + L+T     GAVVG H V  +    D +    E         D++ L      I  E+ AR               FDVP GGT +ANFD+
Sbjct:    2 TRLRIIAVGGLLAAAVGCSGGPRIVPVSGVVKLDGQPYGNAVVSFQPIGGESNPEPGRGSSAYTDENGRFELQTDNARKGAVVGKHRVRIMTRGNDVVGQSPE------GSPDESPLNRPVDPIPPEWNARSNV-----------DFDVPPGGTDQANFDI 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104067.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4YJC5_9BACT6.850e-1636.31Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A8J7TWK2_9BACT2.470e-1331.85Uncharacterized protein n=1 Tax=Zavarzinella sp. T... [more]
A0A7V8VH60_9BACT2.700e-1332.50Uncharacterized protein n=2 Tax=Gemmataceae TaxID=... [more]
A0A5C5V1R0_9BACT2.350e-1141.94Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
A0A517T4Q8_9PLAN1.670e-1030.57Uncharacterized protein n=1 Tax=Calycomorphotria h... [more]
A0A354GLI9_9BACT1.820e-1040.66Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A7V3JID6_9BACT2.680e-1033.93Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517TLL7_9BACT4.750e-1032.91Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C5ZRB2_9BACT2.240e-944.32Uncharacterized protein n=1 Tax=Pseudobythopirellu... [more]
A0A8J7TW58_9BACT4.340e-932.30Uncharacterized protein n=1 Tax=Zavarzinella sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104067contigP-canaliculata_contig104067:84..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size498
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.1747215-CDS-P-canaliculata_contig104067:83..5811622815611.1747215-CDS-P-canaliculata_contig104067:83..581Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104067 84..581 +
1693494165.2461379-CDS-P-canaliculata_contig104067:83..5811693494165.2461379-CDS-P-canaliculata_contig104067:83..581Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104067 84..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104067.558.1prot_P-canaliculata_contig104067.558.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104067 84..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104067.558.1

>prot_P-canaliculata_contig104067.558.1 ID=prot_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=166bp
MSNFTNLTIALFGVAILSFVGCGDSSVAPVSGKVTVAGKPVEGIRLVFSP
TLIEGENDPGPWSSGMTNSAGEYTLETRYKDIGAVVGMHTVSFVYDDIDQ
IVMFKELRREAKQEGDQAALAAAEQDIAEYKARQKTRPKSTGEKYTQTFD
VPSGGTTEANFDLPN*
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mRNA from alignment at P-canaliculata_contig104067:84..581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104067.558.1 ID=mRNA_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at P-canaliculata_contig104067:84..581+ (Pelvetia canaliculata dioecious)
ATGAGCAATTTTACCAATCTAACAATTGCACTGTTCGGCGTAGCGATTCT GTCATTTGTTGGGTGTGGCGACTCTTCCGTTGCTCCTGTGTCTGGAAAAG TAACCGTAGCGGGGAAACCAGTTGAGGGTATTAGGTTGGTGTTTTCTCCG ACACTCATCGAAGGTGAGAATGATCCTGGGCCTTGGTCTTCGGGCATGAC CAATTCGGCGGGAGAGTACACGCTGGAGACTCGCTATAAAGATATTGGGG CTGTTGTTGGCATGCACACCGTGTCTTTTGTATACGATGACATAGACCAG ATCGTTATGTTCAAAGAGCTACGTAGAGAAGCCAAGCAAGAAGGTGATCA AGCGGCGTTAGCAGCGGCCGAACAGGACATCGCGGAATACAAAGCGCGTC AAAAAACACGTCCGAAATCTACCGGTGAGAAATACACCCAGACGTTTGAT GTTCCTTCGGGCGGAACAACAGAAGCCAATTTCGATTTGCCGAACTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig104067:84..581+

>mRNA_P-canaliculata_contig104067.558.1 ID=mRNA_P-canaliculata_contig104067.558.1|Name=mRNA_P-canaliculata_contig104067.558.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig104067:84..581+ (Pelvetia canaliculata dioecious)
ATGAGCAATTTTACCAATCTAACAATTGCACTGTTCGGCGTAGCGATTCT
GTCATTTGTTGGGTGTGGCGACTCTTCCGTTGCTCCTGTGTCTGGAAAAG
TAACCGTAGCGGGGAAACCAGTTGAGGGTATTAGGTTGGTGTTTTCTCCG
ACACTCATCGAAGGTGAGAATGATCCTGGGCCTTGGTCTTCGGGCATGAC
CAATTCGGCGGGAGAGTACACGCTGGAGACTCGCTATAAAGATATTGGGG
CTGTTGTTGGCATGCACACCGTGTCTTTTGTATACGATGACATAGACCAG
ATCGTTATGTTCAAAGAGCTACGTAGAGAAGCCAAGCAAGAAGGTGATCA
AGCGGCGTTAGCAGCGGCCGAACAGGACATCGCGGAATACAAAGCGCGTC
AAAAAACACGTCCGAAATCTACCGGTGAGAAATACACCCAGACGTTTGAT
GTTCCTTCGGGCGGAACAACAGAAGCCAATTTCGATTTGCCGAACTAGAT
GAGCAATTTTACCAATCTAACAATTGCACTGTTCGGCGTAGCGATTCTGT
CATTTGTTGGGTGTGGCGACTCTTCCGTTGCTCCTGTGTCTGGAAAAGTA
ACCGTAGCGGGGAAACCAGTTGAGGGTATTAGGTTGGTGTTTTCTCCGAC
ACTCATCGAAGGTGAGAATGATCCTGGGCCTTGGTCTTCGGGCATGACCA
ATTCGGCGGGAGAGTACACGCTGGAGACTCGCTATAAAGATATTGGGGCT
GTTGTTGGCATGCACACCGTGTCTTTTGTATACGATGACATAGACCAGAT
CGTTATGTTCAAAGAGCTACGTAGAGAAGCCAAGCAAGAAGGTGATCAAG
CGGCGTTAGCAGCGGCCGAACAGGACATCGCGGAATACAAAGCGCGTCAA
AAAACACGTCCGAAATCTACCGGTGAGAAATACACCCAGACGTTTGATGT
TCCTTCGGGCGGAACAACAGAAGCCAATTTCGATTTGCCGAACTAG
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