mRNA_P-canaliculata_contig103995.553.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103995.553.1
Unique NamemRNA_P-canaliculata_contig103995.553.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103995.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103995contigP-canaliculata_contig103995:48..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size579
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.7611556-CDS-P-canaliculata_contig103995:47..6261622815610.7611556-CDS-P-canaliculata_contig103995:47..626Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103995 48..626 -
1693494165.0323906-CDS-P-canaliculata_contig103995:47..6261693494165.0323906-CDS-P-canaliculata_contig103995:47..626Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103995 48..626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.7719483-UTR-P-canaliculata_contig103995:626..6321622815610.7719483-UTR-P-canaliculata_contig103995:626..632Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103995 627..632 -
1693494165.0424223-UTR-P-canaliculata_contig103995:626..6321693494165.0424223-UTR-P-canaliculata_contig103995:626..632Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103995 627..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103995.553.1prot_P-canaliculata_contig103995.553.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103995 48..626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103995.553.1

>prot_P-canaliculata_contig103995.553.1 ID=prot_P-canaliculata_contig103995.553.1|Name=mRNA_P-canaliculata_contig103995.553.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=193bp
MFEQMRRELSEDPFHAGHCLFAHVALRALAFADPLIVIRLLREEPRKAAY
GAMLYAAQLAPHVAATTLFHPRDVSISPLDLPGWTGALITMPPPTQPSGV
HFAAALVPEGATGAEAEQLFEYITLEEAVELTAESTTILGRRMRNEDYVE
VGPGPGVNRTAFLKAVAALLEVPREAAASSTATAAPGSAPRPR
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mRNA from alignment at P-canaliculata_contig103995:48..632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103995.553.1 ID=mRNA_P-canaliculata_contig103995.553.1|Name=mRNA_P-canaliculata_contig103995.553.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at P-canaliculata_contig103995:48..632- (Pelvetia canaliculata dioecious)
GTAGCGATGTTCGAGCAAATGAGGCGCGAGTTGAGCGAGGACCCCTTCCA
TGCGGGGCACTGCCTCTTCGCCCATGTCGCCCTCCGCGCCTTGGCCTTCG
CGGACCCCTTGATCGTCATCCGGCTCCTGCGCGAGGAGCCCCGCAAGGCG
GCCTACGGCGCGATGCTCTACGCCGCCCAACTCGCTCCGCACGTCGCCGC
CACGACCCTCTTCCACCCGCGCGACGTCTCCATCTCGCCCCTCGACCTCC
CTGGCTGGACCGGGGCCCTGATCACCATGCCGCCCCCGACCCAGCCCTCG
GGCGTGCACTTCGCCGCGGCCCTCGTGCCCGAGGGCGCCACCGGGGCGGA
GGCCGAACAGCTCTTCGAGTACATCACCCTAGAAGAGGCCGTCGAGCTCA
CCGCCGAATCCACCACCATCCTCGGGCGGCGAATGCGTAACGAGGACTAC
GTCGAGGTCGGGCCCGGCCCCGGGGTCAACCGGACGGCCTTCCTCAAGGC
CGTCGCCGCCTTGCTTGAAGTCCCACGGGAGGCAGCCGCCAGCAGCACCG
CCACAGCCGCCCCGGGCAGCGCCCCGCGCCCGCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103995:48..632-

>mRNA_P-canaliculata_contig103995.553.1 ID=mRNA_P-canaliculata_contig103995.553.1|Name=mRNA_P-canaliculata_contig103995.553.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at P-canaliculata_contig103995:48..632- (Pelvetia canaliculata dioecious)
ATGTTCGAGCAAATGAGGCGCGAGTTGAGCGAGGACCCCTTCCATGCGGG
GCACTGCCTCTTCGCCCATGTCGCCCTCCGCGCCTTGGCCTTCGCGGACC
CCTTGATCGTCATCCGGCTCCTGCGCGAGGAGCCCCGCAAGGCGGCCTAC
GGCGCGATGCTCTACGCCGCCCAACTCGCTCCGCACGTCGCCGCCACGAC
CCTCTTCCACCCGCGCGACGTCTCCATCTCGCCCCTCGACCTCCCTGGCT
GGACCGGGGCCCTGATCACCATGCCGCCCCCGACCCAGCCCTCGGGCGTG
CACTTCGCCGCGGCCCTCGTGCCCGAGGGCGCCACCGGGGCGGAGGCCGA
ACAGCTCTTCGAGTACATCACCCTAGAAGAGGCCGTCGAGCTCACCGCCG
AATCCACCACCATCCTCGGGCGGCGAATGCGTAACGAGGACTACGTCGAG
GTCGGGCCCGGCCCCGGGGTCAACCGGACGGCCTTCCTCAAGGCCGTCGC
CGCCTTGCTTGAAGTCCCACGGGAGGCAGCCGCCAGCAGCACCGCCACAG
CCGCCCCGGGCAGCGCCCCGCGCCCGCGGATGTTCGAGCAAATGAGGCGC
GAGTTGAGCGAGGACCCCTTCCATGCGGGGCACTGCCTCTTCGCCCATGT
CGCCCTCCGCGCCTTGGCCTTCGCGGACCCCTTGATCGTCATCCGGCTCC
TGCGCGAGGAGCCCCGCAAGGCGGCCTACGGCGCGATGCTCTACGCCGCC
CAACTCGCTCCGCACGTCGCCGCCACGACCCTCTTCCACCCGCGCGACGT
CTCCATCTCGCCCCTCGACCTCCCTGGCTGGACCGGGGCCCTGATCACCA
TGCCGCCCCCGACCCAGCCCTCGGGCGTGCACTTCGCCGCGGCCCTCGTG
CCCGAGGGCGCCACCGGGGCGGAGGCCGAACAGCTCTTCGAGTACATCAC
CCTAGAAGAGGCCGTCGAGCTCACCGCCGAATCCACCACCATCCTCGGGC
GGCGAATGCGTAACGAGGACTACGTCGAGGTCGGGCCCGGCCCCGGGGTC
AACCGGACGGCCTTCCTCAAGGCCGTCGCCGCCTTGCTTGAAGTCCCACG
GGAGGCAGCCGCCAGCAGCACCGCCACAGCCGCCCCGGGCAGCGCCCCGC
GCCCGCGG
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