mRNA_P-canaliculata_contig103955.544.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103955.544.1
Unique NamemRNA_P-canaliculata_contig103955.544.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103955.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103955contigP-canaliculata_contig103955:230..964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog1403819.BATR01000163_gene5508
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs2ITS0@203494,46TX9@74201,COG0515@1,COG0515@2
COG Functional cat.KLT
Best tax levelVerrucomicrobiae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.0520184-CDS-P-canaliculata_contig103955:229..9641622815610.0520184-CDS-P-canaliculata_contig103955:229..964Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103955 230..964 +
1693494164.6700342-CDS-P-canaliculata_contig103955:229..9641693494164.6700342-CDS-P-canaliculata_contig103955:229..964Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103955 230..964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103955.544.1prot_P-canaliculata_contig103955.544.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103955 230..964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103955.544.1

>prot_P-canaliculata_contig103955.544.1 ID=prot_P-canaliculata_contig103955.544.1|Name=mRNA_P-canaliculata_contig103955.544.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=245bp
ISQRYVEARKALGNGKVKRARAEFDKLVADGEVPEPTKGWSRYNAGIAAL
LEDDLERANAVFGDLAESAQAAAGDDAKAFAAVVEAVVPKRFPSGSEGRE
AAVLAGGLSGWVAGDADWASRCLNAFAASEDTGGQAWLESYRPLVKPYLH
DLRVVTPWLLEAEAEPTARTAKEMRAAVAKLKLDTGVSASARETLAAKAD
ELDRVFAEARAQKKALSEGNAAEEIEMVKALAAEANGMVDNYDFS
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mRNA from alignment at P-canaliculata_contig103955:230..964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103955.544.1 ID=mRNA_P-canaliculata_contig103955.544.1|Name=mRNA_P-canaliculata_contig103955.544.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at P-canaliculata_contig103955:230..964+ (Pelvetia canaliculata dioecious)
ATTTCACAGCGCTATGTCGAGGCCAGAAAGGCACTCGGGAACGGTAAGGT
GAAGCGGGCGCGGGCGGAGTTTGATAAGTTGGTCGCTGATGGTGAAGTGC
CCGAGCCGACGAAGGGCTGGAGCCGCTACAATGCGGGGATCGCGGCGTTA
CTCGAAGATGATCTCGAAAGGGCGAACGCCGTTTTCGGGGATCTCGCCGA
GAGTGCGCAGGCGGCTGCTGGGGATGATGCGAAAGCTTTCGCCGCCGTGG
TGGAGGCGGTGGTGCCCAAGCGGTTTCCGAGCGGTAGCGAGGGGCGGGAA
GCAGCGGTGCTTGCGGGTGGGCTTTCGGGGTGGGTCGCAGGAGACGCGGA
TTGGGCGTCACGTTGTCTGAATGCCTTCGCGGCTTCTGAAGATACCGGTG
GGCAGGCGTGGTTGGAAAGTTATCGCCCGCTAGTGAAACCGTATCTCCAC
GATCTCAGAGTGGTGACGCCGTGGCTTTTAGAAGCGGAGGCTGAGCCGAC
GGCGCGGACGGCTAAGGAGATGCGTGCGGCGGTCGCGAAGCTGAAGTTAG
ATACCGGTGTGTCGGCAAGCGCGCGCGAAACGCTCGCTGCCAAAGCCGAC
GAACTCGACCGGGTGTTCGCCGAAGCGCGTGCGCAGAAAAAAGCGTTGAG
CGAGGGGAATGCTGCAGAAGAAATCGAGATGGTGAAGGCGCTCGCCGCAG
AGGCGAATGGGATGGTGGATAACTACGATTTCTCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103955:230..964+

>mRNA_P-canaliculata_contig103955.544.1 ID=mRNA_P-canaliculata_contig103955.544.1|Name=mRNA_P-canaliculata_contig103955.544.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1470bp|location=Sequence derived from alignment at P-canaliculata_contig103955:230..964+ (Pelvetia canaliculata dioecious)
ATTTCACAGCGCTATGTCGAGGCCAGAAAGGCACTCGGGAACGGTAAGGT
GAAGCGGGCGCGGGCGGAGTTTGATAAGTTGGTCGCTGATGGTGAAGTGC
CCGAGCCGACGAAGGGCTGGAGCCGCTACAATGCGGGGATCGCGGCGTTA
CTCGAAGATGATCTCGAAAGGGCGAACGCCGTTTTCGGGGATCTCGCCGA
GAGTGCGCAGGCGGCTGCTGGGGATGATGCGAAAGCTTTCGCCGCCGTGG
TGGAGGCGGTGGTGCCCAAGCGGTTTCCGAGCGGTAGCGAGGGGCGGGAA
GCAGCGGTGCTTGCGGGTGGGCTTTCGGGGTGGGTCGCAGGAGACGCGGA
TTGGGCGTCACGTTGTCTGAATGCCTTCGCGGCTTCTGAAGATACCGGTG
GGCAGGCGTGGTTGGAAAGTTATCGCCCGCTAGTGAAACCGTATCTCCAC
GATCTCAGAGTGGTGACGCCGTGGCTTTTAGAAGCGGAGGCTGAGCCGAC
GGCGCGGACGGCTAAGGAGATGCGTGCGGCGGTCGCGAAGCTGAAGTTAG
ATACCGGTGTGTCGGCAAGCGCGCGCGAAACGCTCGCTGCCAAAGCCGAC
GAACTCGACCGGGTGTTCGCCGAAGCGCGTGCGCAGAAAAAAGCGTTGAG
CGAGGGGAATGCTGCAGAAGAAATCGAGATGGTGAAGGCGCTCGCCGCAG
AGGCGAATGGGATGGTGGATAACTACGATTTCTCGATTTCACAGCGCTAT
GTCGAGGCCAGAAAGGCACTCGGGAACGGTAAGGTGAAGCGGGCGCGGGC
GGAGTTTGATAAGTTGGTCGCTGATGGTGAAGTGCCCGAGCCGACGAAGG
GCTGGAGCCGCTACAATGCGGGGATCGCGGCGTTACTCGAAGATGATCTC
GAAAGGGCGAACGCCGTTTTCGGGGATCTCGCCGAGAGTGCGCAGGCGGC
TGCTGGGGATGATGCGAAAGCTTTCGCCGCCGTGGTGGAGGCGGTGGTGC
CCAAGCGGTTTCCGAGCGGTAGCGAGGGGCGGGAAGCAGCGGTGCTTGCG
GGTGGGCTTTCGGGGTGGGTCGCAGGAGACGCGGATTGGGCGTCACGTTG
TCTGAATGCCTTCGCGGCTTCTGAAGATACCGGTGGGCAGGCGTGGTTGG
AAAGTTATCGCCCGCTAGTGAAACCGTATCTCCACGATCTCAGAGTGGTG
ACGCCGTGGCTTTTAGAAGCGGAGGCTGAGCCGACGGCGCGGACGGCTAA
GGAGATGCGTGCGGCGGTCGCGAAGCTGAAGTTAGATACCGGTGTGTCGG
CAAGCGCGCGCGAAACGCTCGCTGCCAAAGCCGACGAACTCGACCGGGTG
TTCGCCGAAGCGCGTGCGCAGAAAAAAGCGTTGAGCGAGGGGAATGCTGC
AGAAGAAATCGAGATGGTGAAGGCGCTCGCCGCAGAGGCGAATGGGATGG
TGGATAACTACGATTTCTCG
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