mRNA_P-canaliculata_contig10395.543.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10395.543.1
Unique NamemRNA_P-canaliculata_contig10395.543.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A2I0RZ59_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0RZ59_9PEZI)

HSP 1 Score: 186 bits (471), Expect = 3.760e-57
Identity = 99/146 (67.81%), Postives = 118/146 (80.82%), Query Frame = 1
Query:    1 RTPTSVEKMTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRKKEKGRKKK 438
            RTP S   M   HLSNEEFF  L+ LI  +Q+ GHGSVYLTQKR+T+DPST A DT+   K ADDPL DLHPP+PLP+I+RATDGK+ ++D+K KN +K+KLST+V PDDLE FF +YAEVCKAGMQSL+KRDRSKRKK KG+ KK
Sbjct:   43 RTPESPITMANPHLSNEEFFINLTSLISNVQEKGHGSVYLTQKRLTYDPSTTAEDTSK--KVADDPLWDLHPPNPLPLIVRATDGKTQSRDRK-KNKDKMKLSTIVQPDDLEAFFAKYAEVCKAGMQSLKKRDRSKRKKVKGKGKK 185          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A2G5HTE0_CERBT (Signal recognition particle subunit SRP14 n=4 Tax=Cercospora TaxID=29002 RepID=A0A2G5HTE0_CERBT)

HSP 1 Score: 182 bits (462), Expect = 1.780e-56
Identity = 96/138 (69.57%), Postives = 115/138 (83.33%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRKKEKGRKKK 438
            M + HLSNEEFF  L+ L+  +Q+ GHGSVYLTQKR+++DPST A D +   K ADDPL DLHPP+PLP+I+RATDGKS +KD+K KN +K+KLST+V PDDLE FFTRYAEVCKAGMQSL+KRDRSKRKK KG+ KK
Sbjct:    1 MAKPHLSNEEFFINLTSLVSKVQEKGHGSVYLTQKRLSYDPSTTAEDESK--KVADDPLWDLHPPNPLPLIVRATDGKSQSKDRK-KNKDKIKLSTIVQPDDLEAFFTRYAEVCKAGMQSLKKRDRSKRKKVKGKGKK 135          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A6A6Q580_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q580_9PEZI)

HSP 1 Score: 169 bits (429), Expect = 2.170e-51
Identity = 86/128 (67.19%), Postives = 104/128 (81.25%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSK 408
            M+R+HLSNE+FFS L+ L+E  QK GHGSV+LTQKRMTFD S+A        K ADDPL DLHPPHPLP+I+RATDG+ST  D K+KN +KVKLST+V P+++  FF RYAEVC+AGMQSL+KRDRSK
Sbjct:    1 MSREHLSNEDFFSQLAALVEKTQKKGHGSVHLTQKRMTFDTSSAP---QKPVKVADDPLWDLHPPHPLPLIVRATDGESTKADMKTKNPDKVKLSTVVQPEEMAAFFARYAEVCRAGMQSLKKRDRSK 125          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: N1PK55_DOTSN (Signal recognition particle subunit SRP14 n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=N1PK55_DOTSN)

HSP 1 Score: 168 bits (425), Expect = 7.770e-51
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 1
Query:   31 RDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKR 411
            R+HL ++EFF+ L+ LIE  Q+ GHGSVYLTQKR+T+DPST  P    A +  DD L DL+PP+PLP+IIRATDGKS  KD+K KN +K+KLST+V PDDLE FFTRYAEVCKAGMQSL+KRDRSKR
Sbjct:    2 REHLGHDEFFTQLTSLIENTQQKGHGSVYLTQKRLTYDPSTKTP----APRSIDDSLSDLNPPNPLPLIIRATDGKSQDKDRK-KNKDKIKLSTIVQPDDLEAFFTRYAEVCKAGMQSLKKRDRSKR 123          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A6G1L0S7_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1L0S7_9PEZI)

HSP 1 Score: 168 bits (425), Expect = 9.390e-51
Identity = 86/129 (66.67%), Postives = 106/129 (82.17%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKR 411
            M R HL +++FF+ L+ LI   Q+ GHG+VYLTQKR+TFD S ++P   + TK  DDPL DLHPP+PLPII+RATDGKS  KD++ KN EKVKLST+V PDD+E+F+TRYAEVCKAGMQSL+KRDRSKR
Sbjct:    1 MARSHLGSDDFFTQLASLIHATQQKGHGAVYLTQKRLTFDTSASSP---SPTKVQDDPLWDLHPPNPLPIIVRATDGKSQLKDRQ-KNKEKVKLSTIVQPDDIESFYTRYAEVCKAGMQSLKKRDRSKR 125          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A8H6RPC0_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Pseudocercospora fuligena TaxID=685502 RepID=A0A8H6RPC0_9PEZI)

HSP 1 Score: 164 bits (415), Expect = 2.570e-49
Identity = 91/137 (66.42%), Postives = 110/137 (80.29%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRK-KEKGRK 432
            M ++HLSN+EFF  L+ LIE  Q+ GHGSV+LTQKR+TFD S ++P      K ADDPL DL+PP+PLPIIIRATDGKS +KD+  KN  K+KLSTLV PDDL++FF RYAEVCKAGMQSL+KRDR K K K+KG+K
Sbjct:    1 MPKEHLSNDEFFVQLTSLIEKTQQKGHGSVFLTQKRLTFDTSASSPPPGQ--KAADDPLWDLNPPNPLPIIIRATDGKSQSKDR-VKNKVKIKLSTLVQPDDLDSFFARYAEVCKAGMQSLKKRDRKKAKSKKKGKK 134          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A139HI83_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Pseudocercospora eumusae TaxID=321146 RepID=A0A139HI83_9PEZI)

HSP 1 Score: 164 bits (415), Expect = 3.360e-48
Identity = 87/138 (63.04%), Postives = 113/138 (81.88%), Query Frame = 1
Query:   22 KMTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRK-KEKGRK 432
            +M ++HLSN+EFF+ L+ LIE  Q+ GHGSV+LTQKR+TFD S ++P      K ADDPL DLHPP+PLPII+RATDGKS ++D+  KN +K+KLST+V P++L++FF RYAEVCKAGMQSL+KRDR K K K+KG+K
Sbjct:   84 EMPKEHLSNDEFFAQLTSLIEKTQQKGHGSVFLTQKRLTFDTSASSPPPGQ--KVADDPLWDLHPPNPLPIIVRATDGKSQSRDR-VKNKDKIKLSTIVQPEELDSFFARYAEVCKAGMQSLKKRDRKKAKSKKKGKK 218          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: M3AUW1_PSEFD (Signal recognition particle subunit SRP14 n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M3AUW1_PSEFD)

HSP 1 Score: 160 bits (405), Expect = 8.500e-48
Identity = 89/137 (64.96%), Postives = 110/137 (80.29%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRK-KEKGRK 432
            M ++HLSN+EFF  L+ LIE  Q+ GHGSV+LTQKR+TF+ S ++P      K ADDPL DL+PP+PLPIIIRATDGKS ++++  KN  KVKLST+V PDDL+ FFTRYAEVCKAGMQSL+KRDR K K K+KG+K
Sbjct:    1 MPKEHLSNDEFFVQLTSLIEKTQQKGHGSVFLTQKRLTFNTSVSSPPLGQ--KVADDPLWDLNPPNPLPIIIRATDGKSRSEER-IKNKNKVKLSTIVQPDDLDIFFTRYAEVCKAGMQSLKKRDRKKAKSKKKGKK 134          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A4U0U270_9PEZI (Signal recognition particle subunit SRP14 n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0U270_9PEZI)

HSP 1 Score: 160 bits (405), Expect = 1.280e-47
Identity = 92/149 (61.74%), Postives = 112/149 (75.17%), Query Frame = 1
Query:   25 MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDK-----------KSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKRKK-EKGRKK 435
            M R+HLSN++FF+ L+ LIET  + GHGSVYLTQKR+TF  S  AP + T   P DDPL DLHPP+PLP+I+RATDGKS   DK           ++KN EKVKLST+V PD++E FFTRYAEVCK GM+ LR+RDRSKRKK +KG+KK
Sbjct:    1 MAREHLSNDDFFTQLASLIETTHQKGHGSVYLTQKRLTFGGS--APSSPTGKVP-DDPLWDLHPPNPLPLIVRATDGKSHKLDKEGGATAKGGIGRTKNAEKVKLSTVVQPDNIEVFFTRYAEVCKGGMRGLRRRDRSKRKKKDKGKKK 146          
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Match: A0A1Z5SPL5_HORWE (Signal recognition particle subunit SRP14 n=13 Tax=Hortaea werneckii TaxID=91943 RepID=A0A1Z5SPL5_HORWE)

HSP 1 Score: 159 bits (403), Expect = 4.480e-47
Identity = 84/125 (67.20%), Postives = 100/125 (80.00%), Query Frame = 1
Query:   37 HLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNTATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAPDDLETFFTRYAEVCKAGMQSLRKRDRSKR 411
            HLS ++FF+ L+ LIE  Q+ GHGSVYLTQKR+TFD S  +     A K ADDPL DLHP +PLP+I+RATDGKS ++D+K KN EKVKLST+V PDD+E FF RYAEVCK GMQSL+KRDRSKR
Sbjct:   32 HLSADDFFAQLASLIEKTQQKGHGSVYLTQKRLTFDTSNPSQANAPAQKVADDPLWDLHPVNPLPLIVRATDGKSQSQDRK-KNKEKVKLSTIVHPDDVEAFFGRYAEVCKQGMQSLKKRDRSKR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10395.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0RZ59_9PEZI3.760e-5767.81Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A2G5HTE0_CERBT1.780e-5669.57Signal recognition particle subunit SRP14 n=4 Tax=... [more]
A0A6A6Q580_9PEZI2.170e-5167.19Signal recognition particle subunit SRP14 n=1 Tax=... [more]
N1PK55_DOTSN7.770e-5168.50Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A6G1L0S7_9PEZI9.390e-5166.67Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A8H6RPC0_9PEZI2.570e-4966.42Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A139HI83_9PEZI3.360e-4863.04Signal recognition particle subunit SRP14 n=1 Tax=... [more]
M3AUW1_PSEFD8.500e-4864.96Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A4U0U270_9PEZI1.280e-4761.74Signal recognition particle subunit SRP14 n=1 Tax=... [more]
A0A1Z5SPL5_HORWE4.480e-4767.20Signal recognition particle subunit SRP14 n=13 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10395contigP-canaliculata_contig10395:1402..1977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score169.1
Seed ortholog evalue1.6e-39
Seed eggNOG ortholog64363.EME42782
KEGG koko:K03104
KEGG TC3.A.5.9
KEGG Pathwayko03060,map03060
EggNOG free text desc.Signal recognition particle 14kD protein
EggNOG OGs2025F@147541,2E5I7@1,2SCBK@2759,3A44U@33154,3MM0X@451867,3P4CN@4751,3QW49@4890
COG Functional cat.S
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10395.543.1prot_P-canaliculata_contig10395.543.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10395 1426..1977 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.982102-UTR-P-canaliculata_contig10395:1401..14251622815609.982102-UTR-P-canaliculata_contig10395:1401..1425Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10395 1402..1425 +
1693494164.630253-UTR-P-canaliculata_contig10395:1401..14251693494164.630253-UTR-P-canaliculata_contig10395:1401..1425Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10395 1402..1425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.9966507-CDS-P-canaliculata_contig10395:1425..14551622815609.9966507-CDS-P-canaliculata_contig10395:1425..1455Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1426..1455 +
1693494164.645131-CDS-P-canaliculata_contig10395:1425..14551693494164.645131-CDS-P-canaliculata_contig10395:1425..1455Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1426..1455 +
1622815610.008164-CDS-P-canaliculata_contig10395:1507..15861622815610.008164-CDS-P-canaliculata_contig10395:1507..1586Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1508..1586 +
1693494164.65325-CDS-P-canaliculata_contig10395:1507..15861693494164.65325-CDS-P-canaliculata_contig10395:1507..1586Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1508..1586 +
1622815610.0180998-CDS-P-canaliculata_contig10395:1636..19771622815610.0180998-CDS-P-canaliculata_contig10395:1636..1977Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1637..1977 +
1693494164.6615489-CDS-P-canaliculata_contig10395:1636..19771693494164.6615489-CDS-P-canaliculata_contig10395:1636..1977Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10395 1637..1977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10395.543.1

>prot_P-canaliculata_contig10395.543.1 ID=prot_P-canaliculata_contig10395.543.1|Name=mRNA_P-canaliculata_contig10395.543.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=150bp
MTRDHLSNEEFFSGLSKLIETLQKAGHGSVYLTQKRMTFDPSTAAPDTNT
ATKPADDPLRDLHPPHPLPIIIRATDGKSTTKDKKSKNNEKVKLSTLVAP
DDLETFFTRYAEVCKAGMQSLRKRDRSKRKKEKGRKKKAALTPADGKKS*
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mRNA from alignment at P-canaliculata_contig10395:1402..1977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10395.543.1 ID=mRNA_P-canaliculata_contig10395.543.1|Name=mRNA_P-canaliculata_contig10395.543.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig10395:1402..1977+ (Pelvetia canaliculata dioecious)
AGGACGCCCACGAGCGTCGAAAAGATGACGCGAGATCACCTGAGTAATGA AGAGGTCTGTTTCCTCACTCACGAAGCCCTCCGACTCATTAATGACCCCC GACCAGTTCTTCTCCGGGCTCAGCAAATTGATCGAGACGCTCCAAAAAGC CGGTCATGGTTCCGTATACTTGACCCAGAAACGAAGTGACCACTGCCCCC GCCCCCAATCCTTCGTCGCCTGACCCCTCTGGTAGTGACCTTTGACCCCA GCACCGCAGCCCCCGACACGAACACCGCCACCAAACCCGCCGACGACCCG CTCCGTGACCTCCACCCACCGCACCCGCTGCCCATCATCATCCGCGCCAC AGACGGCAAGAGCACAACGAAGGACAAGAAAAGCAAAAACAATGAAAAGG TCAAATTGAGCACCCTGGTCGCTCCGGACGACCTGGAAACGTTCTTCACG CGCTACGCGGAAGTCTGCAAGGCGGGCATGCAGAGTTTGAGGAAGAGGGA TCGGAGCAAAAGGAAAAAAGAAAAGGGAAGGAAAAAGAAAGCTGCACTAA CGCCTGCCGACGGCAAAAAGTCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10395:1402..1977+

>mRNA_P-canaliculata_contig10395.543.1 ID=mRNA_P-canaliculata_contig10395.543.1|Name=mRNA_P-canaliculata_contig10395.543.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at P-canaliculata_contig10395:1402..1977+ (Pelvetia canaliculata dioecious)
ATGACGCGAGATCACCTGAGTAATGAAGAGATGACGCGAGATCACCTGAG
TAATGAAGAGTTCTTCTCCGGGCTCAGCAAATTGATCGAGACGCTCCAAA
AAGCCGGTCATGGTTCCGTATACTTGACCCAGAAACGAATTCTTCTCCGG
GCTCAGCAAATTGATCGAGACGCTCCAAAAAGCCGGTCATGGTTCCGTAT
ACTTGACCCAGAAACGAATGACCTTTGACCCCAGCACCGCAGCCCCCGAC
ACGAACACCGCCACCAAACCCGCCGACGACCCGCTCCGTGACCTCCACCC
ACCGCACCCGCTGCCCATCATCATCCGCGCCACAGACGGCAAGAGCACAA
CGAAGGACAAGAAAAGCAAAAACAATGAAAAGGTCAAATTGAGCACCCTG
GTCGCTCCGGACGACCTGGAAACGTTCTTCACGCGCTACGCGGAAGTCTG
CAAGGCGGGCATGCAGAGTTTGAGGAAGAGGGATCGGAGCAAAAGGAAAA
AAGAAAAGGGAAGGAAAAAGAAAGCTGCACTAACGCCTGCCGACGGCAAA
AAGTCGTGATGACCTTTGACCCCAGCACCGCAGCCCCCGACACGAACACC
GCCACCAAACCCGCCGACGACCCGCTCCGTGACCTCCACCCACCGCACCC
GCTGCCCATCATCATCCGCGCCACAGACGGCAAGAGCACAACGAAGGACA
AGAAAAGCAAAAACAATGAAAAGGTCAAATTGAGCACCCTGGTCGCTCCG
GACGACCTGGAAACGTTCTTCACGCGCTACGCGGAAGTCTGCAAGGCGGG
CATGCAGAGTTTGAGGAAGAGGGATCGGAGCAAAAGGAAAAAAGAAAAGG
GAAGGAAAAAGAAAGCTGCACTAACGCCTGCCGACGGCAAAAAGTCGTGA
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