mRNA_P-canaliculata_contig103928.539.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103928.539.1
Unique NamemRNA_P-canaliculata_contig103928.539.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A2D6QCT3_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6QCT3_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 5.420e-8
Identity = 53/174 (30.46%), Postives = 77/174 (44.25%), Query Frame = 1
Query:   22 GLDDVFDVRFTAAVDRLALFLRLRYGAG-----EDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKI--------GAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
            G    +D  F    DR   F+R + G       E  D++ + YL A   F  F  +   +F GWL +I        G   A D R+     P+ A                TGPFTAA R+E R+ V+ A++ L    R+VL+ R+F GL+  E  E    S  ++++  ARAL
Sbjct:   15 GDQSAYDALFALHRDRALFFIRAKLGPAMREKVESQDVLQESYLMAVRDFKDFAGKDERAFQGWLYRIIENRLNDLGGFFAADKRQP---VPIPASPP-------------TGPFTAANRVEHREKVSQALDILSDDHREVLIHRFFMGLSAEETGELMGRSAGAIRKLSARAL 172          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: UPI001CA7397D (RNA polymerase sigma factor n=1 Tax=Hephaestia sp. CMS5P-6 TaxID=2873268 RepID=UPI001CA7397D)

HSP 1 Score: 54.3 bits (129), Expect = 3.230e-6
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  196 WLCKIGAGCAIDWRR-RGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALA 507
            WL  I      DWRR R  R+P+A G      A +   D  +GP T AG   A DA+   I  L A  RDVL+ R   GL+QAE A+A +++  +V+  LARA A
Sbjct:   22 WLAAIALNRCRDWRRPRRVRAPLACGDA----ATTTVPDDRSGPETVAGDRAALDALRREIAHLPAKLRDVLVLRATEGLSQAETADALDITAKAVETRLARARA 122          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A1F8TPA4_9CHLR (Uncharacterized protein n=3 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1F8TPA4_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 8.760e-6
Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query:   16 DAGLDDVFDVRFTAAVDRLALFLRLRYGAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPV---AAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQA 531
            DA    V   R  + V R A F+R+R    E  D+ ++ ++RA  +   +E R P  F  WL +I     +D  RR  R      A  + +++D    A   G          EAR+ + +A+E L   +RDVL+ R+F GL+  EI  A     S+V+    RALAA+ R L A
Sbjct:    9 DAAAFGVLYDRHFSTVYRYA-FVRVR-DRMEAEDVTSETFMRALRSLDRYEPRAP--FAAWLFRIARNAIVDRSRRTTRREARERAVATSAWVDPEREAVARG----------EARE-IRSALERLSDLQRDVLLLRFFGGLSTDEICAALGKGASTVRGIQHRALAALRRELAA 168          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A537ZTU4_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZTU4_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-5
Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   97 GAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEA--RDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
            GA E  D   D +++A  A G F    P  F  WL +I A  A + RR  GR    A     + A +     G  P   A  ++A  RD + AA+  L   +R V+  RYFAGL++ EIAE   ++  +V+   +RAL
Sbjct:   34 GATEAEDAAQDGFVKAWRALGRFRAGAP--FKPWLLRIVANEAHNRRRSAGRRAHLA-----VRAAAAEPSGGAAPSPEASVVDAERRDELLAAVNDLPDDQRVVVALRYFAGLSEDEIAETLGIAQGTVKSRTSRAL 164          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A7J9VP59_9ACTN (RNA polymerase sigma factor n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A7J9VP59_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.940e-5
Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 1
Query:    7 ARLDAGLDDVFDV---RFTAAVDRLALFLRLRYGAGEDL-DLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDW-RRRGGRSPVAAGSDSFMDAVSRAQDA--GTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQALNVD 543
            AR   G  D ++V   R+TA   R A FL    GAG+D  D+V + +++A  A   + D  P  F  WL +I A    +  R RG R  +A           RA DA     P   A   E R A+   +  L   +R+V++ RYF GL++AE A A  ++  +V+   +RAL+ +   L+  ++ 
Sbjct:   21 ARARDGDQDAYEVLVGRYTAPAHRTAYFL----GAGDDAEDVVQEAFVKAYRALPRYRDGAP--FRPWLLRIVANETKNAVRGRGRRERLAL----------RALDAPPADDPVLHAVEEERRRALLECMRELAGKDREVVVCRYFVGLSEAETAAALGIARGTVKSRTSRALSRLRTRLEDASMS 190          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A538E910_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538E910_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 4.550e-5
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 1
Query:   97 GAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQ-DAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
            GA E  D   + +++A  A G F    P  F  WL +I A  A + RR  GR    A    F  A +    DA   P  +    E R  + AA+ GL   +R V+  RYFAGL++ E+AE   ++  +V+   +RAL
Sbjct:   34 GATEAEDAAQEGFVKAWRALGRFRPGAP--FKPWLLRIVANEAHNRRRSAGRRARLA----FRAAAAEPSGDAAPSPEASVLDSERRTELLAAVNGLPEDQRLVVALRYFAGLSEDEVAETLGIAPGTVKSRTSRAL 164          
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: UPI001F3CBCB9 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomadura sp. K4S16 TaxID=1316147 RepID=UPI001F3CBCB9)

HSP 1 Score: 52.4 bits (124), Expect = 9.390e-5
Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 1
Query:   70 LALFLRLRYGAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAG-----SDSFMDAVSRAQ--------DAGT--GPFTAAGRIEARD----AVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQALNVDQP 549
            LA   R+   A +  DLV + YLRA  A+GGFE R   SF  W+ KI     +  R R GR P+ +G      D  +  V RA         DA    GP   A  + AR+    A+ A ++ L   +R V +         A++A     S ++V+  L RA + + +      V +P
Sbjct:   40 LAHCYRMTGSADDAADLVQETYLRAWRAYGGFEGRS--SFRAWMYKIATNVCLRARERRGRRPLPSGLGPASEDPHIAPVERADVMWLEPLPDAAVTAGPADPAAIVTARETLRLALVAGLQHLPPRQRAVFILTEALDFPAADVAAMLGTSVAAVKSLLQRARSGMAQVTAQEGVAEP 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2D6QCT3_9ARCH5.420e-830.46Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
UPI001CA7397D3.230e-640.95RNA polymerase sigma factor n=1 Tax=Hephaestia sp.... [more]
A0A1F8TPA4_9CHLR8.760e-632.00Uncharacterized protein n=3 Tax=unclassified Chlor... [more]
A0A537ZTU4_9ACTN1.250e-534.06RNA polymerase sigma factor n=1 Tax=Actinomycetia ... [more]
A0A7J9VP59_9ACTN1.940e-531.18RNA polymerase sigma factor n=1 Tax=Propionibacter... [more]
A0A538E910_9ACTN4.550e-533.58RNA polymerase sigma factor n=3 Tax=Actinomycetia ... [more]
UPI001F3CBCB99.390e-529.61sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103928contigP-canaliculata_contig103928:267..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.799506-CDS-P-canaliculata_contig103928:266..8181622815609.799506-CDS-P-canaliculata_contig103928:266..818Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103928 267..818 +
1693494164.5465508-CDS-P-canaliculata_contig103928:266..8181693494164.5465508-CDS-P-canaliculata_contig103928:266..818Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103928 267..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103928.539.1prot_P-canaliculata_contig103928.539.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103928 267..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103928.539.1

>prot_P-canaliculata_contig103928.539.1 ID=prot_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=184bp
RDARLDAGLDDVFDVRFTAAVDRLALFLRLRYGAGEDLDLVNDVYLRARA
AFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAGSDSFMDAVSR
AQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIA
EARNVSTSSVQRSLARALAAVGRPLQALNVDQP*
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mRNA from alignment at P-canaliculata_contig103928:267..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103928.539.1 ID=mRNA_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig103928:267..818+ (Pelvetia canaliculata dioecious)
CGTGATGCCAGGTTAGACGCTGGGCTAGACGACGTATTCGACGTGCGCTT CACGGCGGCGGTCGATCGCCTCGCCCTGTTCCTGCGCCTGCGGTACGGAG CGGGGGAAGATCTGGATCTCGTCAACGATGTCTATCTTCGGGCGCGGGCC GCTTTCGGCGGGTTCGAGGACCGGGGGCCGGGGAGCTTTCTCGGCTGGCT TTGCAAGATCGGTGCGGGGTGCGCCATCGACTGGCGGCGGCGTGGCGGGC GCAGTCCAGTGGCGGCGGGCAGCGATAGCTTCATGGACGCTGTAAGCCGG GCTCAGGACGCAGGCACCGGGCCCTTCACGGCCGCGGGCCGCATCGAGGC CCGGGACGCGGTGGCGGCGGCGATCGAGGGTCTCGACGCGGCCGAGCGGG ACGTGCTCATGGCCCGCTACTTCGCGGGGCTTACCCAGGCGGAGATCGCG GAGGCGCGGAACGTGAGCACCTCGTCGGTGCAGCGGTCCCTCGCCCGCGC CCTGGCAGCGGTGGGGCGGCCCCTTCAGGCCCTCAACGTAGACCAGCCGT GA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103928:267..818+

>mRNA_P-canaliculata_contig103928.539.1 ID=mRNA_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at P-canaliculata_contig103928:267..818+ (Pelvetia canaliculata dioecious)
CGTGATGCCAGGTTAGACGCTGGGCTAGACGACGTATTCGACGTGCGCTT
CACGGCGGCGGTCGATCGCCTCGCCCTGTTCCTGCGCCTGCGGTACGGAG
CGGGGGAAGATCTGGATCTCGTCAACGATGTCTATCTTCGGGCGCGGGCC
GCTTTCGGCGGGTTCGAGGACCGGGGGCCGGGGAGCTTTCTCGGCTGGCT
TTGCAAGATCGGTGCGGGGTGCGCCATCGACTGGCGGCGGCGTGGCGGGC
GCAGTCCAGTGGCGGCGGGCAGCGATAGCTTCATGGACGCTGTAAGCCGG
GCTCAGGACGCAGGCACCGGGCCCTTCACGGCCGCGGGCCGCATCGAGGC
CCGGGACGCGGTGGCGGCGGCGATCGAGGGTCTCGACGCGGCCGAGCGGG
ACGTGCTCATGGCCCGCTACTTCGCGGGGCTTACCCAGGCGGAGATCGCG
GAGGCGCGGAACGTGAGCACCTCGTCGGTGCAGCGGTCCCTCGCCCGCGC
CCTGGCAGCGGTGGGGCGGCCCCTTCAGGCCCTCAACGTAGACCAGCCGT
GACGTGATGCCAGGTTAGACGCTGGGCTAGACGACGTATTCGACGTGCGC
TTCACGGCGGCGGTCGATCGCCTCGCCCTGTTCCTGCGCCTGCGGTACGG
AGCGGGGGAAGATCTGGATCTCGTCAACGATGTCTATCTTCGGGCGCGGG
CCGCTTTCGGCGGGTTCGAGGACCGGGGGCCGGGGAGCTTTCTCGGCTGG
CTTTGCAAGATCGGTGCGGGGTGCGCCATCGACTGGCGGCGGCGTGGCGG
GCGCAGTCCAGTGGCGGCGGGCAGCGATAGCTTCATGGACGCTGTAAGCC
GGGCTCAGGACGCAGGCACCGGGCCCTTCACGGCCGCGGGCCGCATCGAG
GCCCGGGACGCGGTGGCGGCGGCGATCGAGGGTCTCGACGCGGCCGAGCG
GGACGTGCTCATGGCCCGCTACTTCGCGGGGCTTACCCAGGCGGAGATCG
CGGAGGCGCGGAACGTGAGCACCTCGTCGGTGCAGCGGTCCCTCGCCCGC
GCCCTGGCAGCGGTGGGGCGGCCCCTTCAGGCCCTCAACGTAGACCAGCC
GTGA
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