mRNA_P-canaliculata_contig103928.539.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A2D6QCT3_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6QCT3_9ARCH) HSP 1 Score: 60.1 bits (144), Expect = 5.420e-8 Identity = 53/174 (30.46%), Postives = 77/174 (44.25%), Query Frame = 1
Query: 22 GLDDVFDVRFTAAVDRLALFLRLRYGAG-----EDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKI--------GAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
G +D F DR F+R + G E D++ + YL A F F + +F GWL +I G A D R+ P+ A TGPFTAA R+E R+ V+ A++ L R+VL+ R+F GL+ E E S ++++ ARAL
Sbjct: 15 GDQSAYDALFALHRDRALFFIRAKLGPAMREKVESQDVLQESYLMAVRDFKDFAGKDERAFQGWLYRIIENRLNDLGGFFAADKRQP---VPIPASPP-------------TGPFTAANRVEHREKVSQALDILSDDHREVLIHRFFMGLSAEETGELMGRSAGAIRKLSARAL 172
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: UPI001CA7397D (RNA polymerase sigma factor n=1 Tax=Hephaestia sp. CMS5P-6 TaxID=2873268 RepID=UPI001CA7397D) HSP 1 Score: 54.3 bits (129), Expect = 3.230e-6 Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 1
Query: 196 WLCKIGAGCAIDWRR-RGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALA 507
WL I DWRR R R+P+A G A + D +GP T AG A DA+ I L A RDVL+ R GL+QAE A+A +++ +V+ LARA A
Sbjct: 22 WLAAIALNRCRDWRRPRRVRAPLACGDA----ATTTVPDDRSGPETVAGDRAALDALRREIAHLPAKLRDVLVLRATEGLSQAETADALDITAKAVETRLARARA 122
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A1F8TPA4_9CHLR (Uncharacterized protein n=3 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1F8TPA4_9CHLR) HSP 1 Score: 53.9 bits (128), Expect = 8.760e-6 Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query: 16 DAGLDDVFDVRFTAAVDRLALFLRLRYGAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPV---AAGSDSFMDAVSRAQDAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQA 531
DA V R + V R A F+R+R E D+ ++ ++RA + +E R P F WL +I +D RR R A + +++D A G EAR+ + +A+E L +RDVL+ R+F GL+ EI A S+V+ RALAA+ R L A
Sbjct: 9 DAAAFGVLYDRHFSTVYRYA-FVRVR-DRMEAEDVTSETFMRALRSLDRYEPRAP--FAAWLFRIARNAIVDRSRRTTRREARERAVATSAWVDPEREAVARG----------EARE-IRSALERLSDLQRDVLLLRFFGGLSTDEICAALGKGASTVRGIQHRALAALRRELAA 168
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A537ZTU4_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZTU4_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 1.250e-5 Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 1
Query: 97 GAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQDAGTGPFTAAGRIEA--RDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
GA E D D +++A A G F P F WL +I A A + RR GR A + A + G P A ++A RD + AA+ L +R V+ RYFAGL++ EIAE ++ +V+ +RAL
Sbjct: 34 GATEAEDAAQDGFVKAWRALGRFRAGAP--FKPWLLRIVANEAHNRRRSAGRRAHLA-----VRAAAAEPSGGAAPSPEASVVDAERRDELLAAVNDLPDDQRVVVALRYFAGLSEDEIAETLGIAQGTVKSRTSRAL 164
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A7J9VP59_9ACTN (RNA polymerase sigma factor n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A7J9VP59_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 1.940e-5 Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 1
Query: 7 ARLDAGLDDVFDV---RFTAAVDRLALFLRLRYGAGEDL-DLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDW-RRRGGRSPVAAGSDSFMDAVSRAQDA--GTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQALNVD 543
AR G D ++V R+TA R A FL GAG+D D+V + +++A A + D P F WL +I A + R RG R +A RA DA P A E R A+ + L +R+V++ RYF GL++AE A A ++ +V+ +RAL+ + L+ ++
Sbjct: 21 ARARDGDQDAYEVLVGRYTAPAHRTAYFL----GAGDDAEDVVQEAFVKAYRALPRYRDGAP--FRPWLLRIVANETKNAVRGRGRRERLAL----------RALDAPPADDPVLHAVEEERRRALLECMRELAGKDREVVVCRYFVGLSEAETAAALGIARGTVKSRTSRALSRLRTRLEDASMS 190
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: A0A538E910_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538E910_9ACTN) HSP 1 Score: 52.0 bits (123), Expect = 4.550e-5 Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 1
Query: 97 GAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAGSDSFMDAVSRAQ-DAGTGPFTAAGRIEARDAVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARAL 504
GA E D + +++A A G F P F WL +I A A + RR GR A F A + DA P + E R + AA+ GL +R V+ RYFAGL++ E+AE ++ +V+ +RAL
Sbjct: 34 GATEAEDAAQEGFVKAWRALGRFRPGAP--FKPWLLRIVANEAHNRRRSAGRRARLA----FRAAAAEPSGDAAPSPEASVLDSERRTELLAAVNGLPEDQRLVVALRYFAGLSEDEVAETLGIAPGTVKSRTSRAL 164
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Match: UPI001F3CBCB9 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomadura sp. K4S16 TaxID=1316147 RepID=UPI001F3CBCB9) HSP 1 Score: 52.4 bits (124), Expect = 9.390e-5 Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 1
Query: 70 LALFLRLRYGAGEDLDLVNDVYLRARAAFGGFEDRGPGSFLGWLCKIGAGCAIDWRRRGGRSPVAAG-----SDSFMDAVSRAQ--------DAGT--GPFTAAGRIEARD----AVAAAIEGLDAAERDVLMARYFAGLTQAEIAEARNVSTSSVQRSLARALAAVGRPLQALNVDQP 549
LA R+ A + DLV + YLRA A+GGFE R SF W+ KI + R R GR P+ +G D + V RA DA GP A + AR+ A+ A ++ L +R V + A++A S ++V+ L RA + + + V +P
Sbjct: 40 LAHCYRMTGSADDAADLVQETYLRAWRAYGGFEGRS--SFRAWMYKIATNVCLRARERRGRRPLPSGLGPASEDPHIAPVERADVMWLEPLPDAAVTAGPADPAAIVTARETLRLALVAGLQHLPPRQRAVFILTEALDFPAADVAAMLGTSVAAVKSLLQRARSGMAQVTAQEGVAEP 216 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103928.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig103928.539.1 >prot_P-canaliculata_contig103928.539.1 ID=prot_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=184bp RDARLDAGLDDVFDVRFTAAVDRLALFLRLRYGAGEDLDLVNDVYLRARAback to top mRNA from alignment at P-canaliculata_contig103928:267..818+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig103928.539.1 ID=mRNA_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig103928:267..818+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig103928:267..818+ >mRNA_P-canaliculata_contig103928.539.1 ID=mRNA_P-canaliculata_contig103928.539.1|Name=mRNA_P-canaliculata_contig103928.539.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at P-canaliculata_contig103928:267..818+ (Pelvetia canaliculata dioecious)back to top |