mRNA_P-canaliculata_contig103889.534.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103889.534.1
Unique NamemRNA_P-canaliculata_contig103889.534.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A7T8ADF3_9SPHN (Uncharacterized protein n=2 Tax=unclassified Croceicoccus TaxID=2629967 RepID=A0A7T8ADF3_9SPHN)

HSP 1 Score: 62.4 bits (150), Expect = 4.400e-11
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   19 VLGGLLYAGSKYFSKAHAEKPGGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            VLG L YAG K+F+K H E P  + +    ++    T V+D   G  R K   W++ DEE+D+SFPASDPPANY
Sbjct:    8 VLGALGYAGYKHFTKQHDE-PAAFADGQPHATQGGGTVVRDAGAGSMRDKPSTWTKTDEEMDESFPASDPPANY 80          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A7S8IW20_9SPHN (Uncharacterized protein n=2 Tax=Qipengyuania soli TaxID=2782568 RepID=A0A7S8IW20_9SPHN)

HSP 1 Score: 59.3 bits (142), Expect = 6.220e-10
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSKAHAEKP---GGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  KL+ LGGL YAG KY+ K +  KP   G   N A   +GP   A++D D G N      W++ DEE DQSFPASDPPANY
Sbjct:    2 MLLKLLALGGLGYAGYKYYEK-NQSKPAFAGNQGNVAIRDAGPD--AMRD-DNGHN------WTKTDEESDQSFPASDPPANY 74          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A845A813_9SPHN (Uncharacterized protein n=1 Tax=Altericroceibacterium indicum TaxID=374177 RepID=A0A845A813_9SPHN)

HSP 1 Score: 58.2 bits (139), Expect = 1.820e-9
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSKAH-AEKP---GGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  KL VLGGL YAG KY+ K      P   GG  NS+   +GP   A+ DK K        +W+ VD+  D+SFPASDPPANY
Sbjct:    1 MLLKLAVLGGLGYAGYKYYEKTRDGSSPAYAGGQGNSSIRDAGP--AAMADKPKR-------QWNSVDQASDESFPASDPPANY 75          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: UPI001C8AE687 (hypothetical protein n=1 Tax=Qipengyuania mesophila TaxID=2867246 RepID=UPI001C8AE687)

HSP 1 Score: 57.4 bits (137), Expect = 3.480e-9
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSKAHAEKPGGYKNSAASSSGPHNTAVQDKDKGLNRAKSD-KWSEVDEELDQSFPASDPPANY 240
            M  KL+ LGGL YAG +Y+ K         K+  A ++   + AV+D   G  R K D  WS+ DE  D+SFPASDPPANY
Sbjct:    1 MLLKLLALGGLGYAGYRYYEKN--------KSQPAFAANQGDAAVRDAGPGAMRDKPDGDWSKTDEASDESFPASDPPANY 73          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A1A7QDQ0_9SPHN (Uncharacterized protein n=1 Tax=Erythrobacter sp. QSSC1-22B TaxID=1860125 RepID=A0A1A7QDQ0_9SPHN)

HSP 1 Score: 57.0 bits (136), Expect = 5.180e-9
Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSKAHAEKPG-----GYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  KL  LG + YAG KY+ K   ++ G     G  +    ++GP  T   +K           WS+ DEELD+SFPASDPPANY
Sbjct:    1 MLLKLAALGAVGYAGYKYYEKNRLDENGVAFAKGQPDGRVRNAGPKATTTDEKS----------WSKTDEELDESFPASDPPANY 75          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A0H4V929_9SPHN (Uncharacterized protein n=2 Tax=Aurantiacibacter atlanticus TaxID=1648404 RepID=A0A0H4V929_9SPHN)

HSP 1 Score: 57.0 bits (136), Expect = 5.570e-9
Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 1
Query:   10 KLIVLGGLLYAGSKYFSKAHAEKPGGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            +L+ LG + YAG +Y+ K  AEK   +    A  S          D   ++   D W EVDE  D+SFPASDPPANY
Sbjct:    2 RLVALGAVGYAGYRYYEKKQAEKNEAFAADEAGGSNFAQVRNAGPDSMASKPAKDTWDEVDEASDESFPASDPPANY 78          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A844YHA4_9SPHN (Uncharacterized protein n=1 Tax=Qipengyuania oceanensis TaxID=1463597 RepID=A0A844YHA4_9SPHN)

HSP 1 Score: 56.6 bits (135), Expect = 7.520e-9
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSKAHAEK-----PGGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  KL+ LG + Y G KY+ K +A+K      G   +++   +GP  TA++D+ K   RA    W++ DEE D+SFPASDPPANY
Sbjct:    1 MLLKLLTLGAIGYGGYKYYEKNYADKNAPAFAGNQGDASVRDAGP--TAMRDEPK---RA----WTKTDEESDESFPASDPPANY 76          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: UPI001F44785B (hypothetical protein n=1 Tax=Erythrobacter sp. SDW2 TaxID=2907154 RepID=UPI001F44785B)

HSP 1 Score: 55.5 bits (132), Expect = 2.090e-8
Identity = 38/84 (45.24%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSK----AHAEKPGGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  K + LG L YAG KY+ K     HA   G   ++    SGP   +++DK        + KWS+ DEE DQSFPASDPPANY
Sbjct:    1 MLLKALALGALGYAGYKYYEKNQKGPHAAFAGNQGDALIRDSGPG--SMRDKP-------ARKWSKTDEESDQSFPASDPPANY 75          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A845AFR0_9SPHN (Uncharacterized protein n=1 Tax=Qipengyuania algicida TaxID=1836209 RepID=A0A845AFR0_9SPHN)

HSP 1 Score: 55.1 bits (131), Expect = 2.900e-8
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   10 KLIVLGGLLYAGSKYFSKAHAEKP----GGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            KL+ LG L YAG +Y+ K   E      GG    +  ++GP   +++DK     RA    W+EVDE+ DQSFPASDPPANY
Sbjct:    3 KLLALGALGYAGYRYYEKTQREAEPAFAGGQGEGSIRNAGPE--SMRDKPA---RA----WTEVDEDSDQSFPASDPPANY 74          
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Match: A0A4R0P1Q0_9SPHN (Uncharacterized protein n=1 Tax=Erythrobacteraceae bacterium CFH 75059 TaxID=2528174 RepID=A0A4R0P1Q0_9SPHN)

HSP 1 Score: 55.1 bits (131), Expect = 2.970e-8
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 MFKKLIVLGGLLYAGSKYFSK--AHAEKPGGYKNSAASSSGPHNTAVQDKDKGLNRAKSDKWSEVDEELDQSFPASDPPANY 240
            M  KL VLGGL YAG KY+ K  A+  +P       A +    +  ++D      R  +  WS+ DE LDQ+FPASDPPA Y
Sbjct:    1 MLLKLAVLGGLGYAGYKYYEKNFANPSRP-------AFAGNQGDATIRDAGVSSMRDNAQSWSKTDEALDQTFPASDPPATY 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103889.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8ADF3_9SPHN4.400e-1147.30Uncharacterized protein n=2 Tax=unclassified Croce... [more]
A0A7S8IW20_9SPHN6.220e-1050.60Uncharacterized protein n=2 Tax=Qipengyuania soli ... [more]
A0A845A813_9SPHN1.820e-947.62Uncharacterized protein n=1 Tax=Altericroceibacter... [more]
UPI001C8AE6873.480e-945.68hypothetical protein n=1 Tax=Qipengyuania mesophil... [more]
A0A1A7QDQ0_9SPHN5.180e-941.18Uncharacterized protein n=1 Tax=Erythrobacter sp. ... [more]
A0A0H4V929_9SPHN5.570e-941.56Uncharacterized protein n=2 Tax=Aurantiacibacter a... [more]
A0A844YHA4_9SPHN7.520e-943.53Uncharacterized protein n=1 Tax=Qipengyuania ocean... [more]
UPI001F44785B2.090e-845.24hypothetical protein n=1 Tax=Erythrobacter sp. SDW... [more]
A0A845AFR0_9SPHN2.900e-845.68Uncharacterized protein n=1 Tax=Qipengyuania algic... [more]
A0A4R0P1Q0_9SPHN2.970e-842.68Uncharacterized protein n=1 Tax=Erythrobacteraceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103889contigP-canaliculata_contig103889:268..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.222462-CDS-P-canaliculata_contig103889:267..5101622815609.222462-CDS-P-canaliculata_contig103889:267..510Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103889 268..510 +
1693494164.2082064-CDS-P-canaliculata_contig103889:267..5101693494164.2082064-CDS-P-canaliculata_contig103889:267..510Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103889 268..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103889.534.1prot_P-canaliculata_contig103889.534.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103889 268..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103889.534.1

>prot_P-canaliculata_contig103889.534.1 ID=prot_P-canaliculata_contig103889.534.1|Name=mRNA_P-canaliculata_contig103889.534.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=81bp
MFKKLIVLGGLLYAGSKYFSKAHAEKPGGYKNSAASSSGPHNTAVQDKDK
GLNRAKSDKWSEVDEELDQSFPASDPPANY*
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mRNA from alignment at P-canaliculata_contig103889:268..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103889.534.1 ID=mRNA_P-canaliculata_contig103889.534.1|Name=mRNA_P-canaliculata_contig103889.534.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at P-canaliculata_contig103889:268..510+ (Pelvetia canaliculata dioecious)
ATGTTTAAGAAGCTCATCGTTTTGGGAGGGCTGCTTTATGCAGGCTCAAA ATACTTCAGTAAGGCACACGCCGAAAAACCCGGTGGGTACAAAAACAGCG CAGCTTCCTCCTCCGGTCCGCATAACACCGCTGTTCAAGACAAGGATAAA GGACTGAACCGCGCCAAATCTGATAAATGGTCAGAAGTCGATGAGGAATT GGATCAAAGTTTTCCGGCGAGCGATCCGCCTGCAAATTACTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103889:268..510+

>mRNA_P-canaliculata_contig103889.534.1 ID=mRNA_P-canaliculata_contig103889.534.1|Name=mRNA_P-canaliculata_contig103889.534.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at P-canaliculata_contig103889:268..510+ (Pelvetia canaliculata dioecious)
ATGTTTAAGAAGCTCATCGTTTTGGGAGGGCTGCTTTATGCAGGCTCAAA
ATACTTCAGTAAGGCACACGCCGAAAAACCCGGTGGGTACAAAAACAGCG
CAGCTTCCTCCTCCGGTCCGCATAACACCGCTGTTCAAGACAAGGATAAA
GGACTGAACCGCGCCAAATCTGATAAATGGTCAGAAGTCGATGAGGAATT
GGATCAAAGTTTTCCGGCGAGCGATCCGCCTGCAAATTACTAAATGTTTA
AGAAGCTCATCGTTTTGGGAGGGCTGCTTTATGCAGGCTCAAAATACTTC
AGTAAGGCACACGCCGAAAAACCCGGTGGGTACAAAAACAGCGCAGCTTC
CTCCTCCGGTCCGCATAACACCGCTGTTCAAGACAAGGATAAAGGACTGA
ACCGCGCCAAATCTGATAAATGGTCAGAAGTCGATGAGGAATTGGATCAA
AGTTTTCCGGCGAGCGATCCGCCTGCAAATTACTAA
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